; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G08650 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G08650
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionexosome complex component RRP41 homolog
Genome locationChr5:7321889..7325224
RNA-Seq ExpressionCSPI05G08650
SyntenyCSPI05G08650
Gene Ontology termsGO:0016075 - rRNA catabolic process (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0004527 - exonuclease activity (molecular function)
GO:0009022 - tRNA nucleotidyltransferase activity (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143616.1 exosome complex component RRP41 homolog [Cucumis sativus]5.3e-130100Show/hide
Query:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG
        LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG

XP_008445878.1 PREDICTED: exosome complex component RRP41 homolog [Cucumis melo]1.9e-12797.93Show/hide
Query:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVTPEGLR DGRRPRELREMRAEIGAVSKANGSA+FEMGNTKVLAAVYGPREVQN+SQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG
        LPIDVFEDVMELAIEGCKAIATYIR VML+HTKQLEYHRDG
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG

XP_022157614.1 exosome complex component RRP41 homolog [Momordica charantia]1.5e-11689.96Show/hide
Query:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFV+PEGLR DGRRP E+R++R EIGAVSKA+GSAVFEMGNTKV+AAVYGPREVQN+SQQ+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIF+QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR
        LPID+FE+VM+LAIEGCKA+A+YIR VMLE+TK+LEY R
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR

XP_022941604.1 exosome complex component RRP41 homolog [Cucurbita moschata]3.0e-11790.79Show/hide
Query:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFV+PEGLR DGRRP E+R++RAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQN+SQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR
        LP+D+FE+VM+LAIEGCKA+A YIR VMLE TK+LEY R
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR

XP_038891797.1 exosome complex component RRP41 homolog [Benincasa hispida]4.0e-12293.78Show/hide
Query:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFV+PEGLR DGRRP E+R++RAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQN+SQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG
        LPIDVFE+VM+LAIEGCKAIA+YIR VML++TKQLEYHRDG
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG

TrEMBL top hitse value%identityAlignment
A0A0A0KNI9 Uncharacterized protein2.5e-130100Show/hide
Query:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG
        LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG

A0A1S3BDQ6 exosome complex component RRP41 homolog9.1e-12897.93Show/hide
Query:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVTPEGLR DGRRPRELREMRAEIGAVSKANGSA+FEMGNTKVLAAVYGPREVQN+SQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG
        LPIDVFEDVMELAIEGCKAIATYIR VML+HTKQLEYHRDG
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG

A0A6J1DWZ5 exosome complex component RRP41 homolog7.2e-11789.96Show/hide
Query:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFV+PEGLR DGRRP E+R++R EIGAVSKA+GSAVFEMGNTKV+AAVYGPREVQN+SQQ+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIF+QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR
        LPID+FE+VM+LAIEGCKA+A+YIR VMLE+TK+LEY R
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR

A0A6J1FNX1 exosome complex component RRP41 homolog1.5e-11790.79Show/hide
Query:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFV+PEGLR DGRRP E+R++RAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQN+SQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR
        LP+D+FE+VM+LAIEGCKA+A YIR VMLE TK+LEY R
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR

A0A6J1JKC7 exosome complex component RRP41 homolog1.5e-11790.79Show/hide
Query:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFV+PEGLR DGRRP E+R++RAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQN+SQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR
        LP+D+FE+VM+LAIEGCKA+A YIR VMLE TK+LEY R
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR

SwissProt top hitse value%identityAlignment
Q5JIR6 Exosome complex component Rrp412.4e-5346.47Show/hide
Query:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        ++ +   G R DGR+  ELR ++ E+G +  A+GSA  E G  KVLAAVYGPRE+  K  Q  ++A++R  Y MA FS  +R +KP  DRRS EIS VIR
Subjt:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
          +E  +L H+ PR+ ID+F+++LQAD GTR A I AA+LALADAGIPM+D+V +C+AG ++   +LDLN  ED+ G  DV V  +P  + +TLLQMD  
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG
        L  D F + + LAI+G KA+    R  + E   ++    +G
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHRDG

Q7YRA3 Exosome complex component RRP412.6e-6350.64Show/hide
Query:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E ++ +G R DGRR  ELR+++A +G  ++A+GSA  E GNTK LA VYGP E++ ++++ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++  AL DL++VE++AGGP + +  LP   ++ LL+MDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQ
        +L  D  E V+E A    + + T +  V+ +H ++
Subjt:  KLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQ

Q921I9 Exosome complex component RRP412.0e-6350.64Show/hide
Query:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E ++ +G R DGRR  ELR+++A +G  ++A+GSA  E GNTK LA VYGP E++ ++S+ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++  AL DL++VE++AGGP + +  LP   ++ LL+MD+
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQ
        +L  D  E V+E A +  + + T +  V+ +H ++
Subjt:  KLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQ

Q9NPD3 Exosome complex component RRP411.5e-6350.64Show/hide
Query:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E ++ +G R DGRR  ELR+++A +G  ++A+GSA  E GNTK LA VYGP E++ ++++ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++  AL DL++VE++AGGP + +  LP   ++ LL+MDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQ
        +L  D  E V+E A +  + + T +  V+ +H ++
Subjt:  KLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQ

Q9SP08 Exosome complex component RRP41 homolog7.2e-9877.92Show/hide
Query:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V PEGLR DGRR  E+R++ AE+G VSKA+GSAVFEMGNTKV+AAVYGPRE+QNKSQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNS  LLDLNYVEDSAGG DVTVG LPKLDKV+LLQMDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR
        KLP++ FE V  LA EGCKAIA  IR V+ E+TKQLEY R
Subjt:  KLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein6.0e-1530.32Show/hide
Query:  RQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL
        R+DGR P +LR +      + + +GSA +  G+TKVLAAVYGP+    K++              A F    + +  +  +   E  +++++T++  C+L
Subjt:  RQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL

Query:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSNALLDLNYVEDSAGG-------PDVTVGFLPK
        T + P +   + +QV+  DG      INAA  AL DAGIPM+ + V  C     N   +LD N +E+           P+ T+  LP+
Subjt:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSNALLDLNYVEDSAGG-------PDVTVGFLPK

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein6.0e-1530.32Show/hide
Query:  RQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL
        R+DGR P +LR +      + + +GSA +  G+TKVLAAVYGP+    K++              A F    + +  +  +   E  +++++T++  C+L
Subjt:  RQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL

Query:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSNALLDLNYVEDSAGG-------PDVTVGFLPK
        T + P +   + +QV+  DG      INAA  AL DAGIPM+ + V  C     N   +LD N +E+           P+ T+  LP+
Subjt:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSNALLDLNYVEDSAGG-------PDVTVGFLPK

AT3G61620.1 3'-5'-exoribonuclease family protein5.1e-9977.92Show/hide
Query:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V PEGLR DGRR  E+R++ AE+G VSKA+GSAVFEMGNTKV+AAVYGPRE+QNKSQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNS  LLDLNYVEDSAGG DVTVG LPKLDKV+LLQMDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR
        KLP++ FE V  LA EGCKAIA  IR V+ E+TKQLEY R
Subjt:  KLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR

AT3G61620.2 3'-5'-exoribonuclease family protein5.1e-9977.92Show/hide
Query:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V PEGLR DGRR  E+R++ AE+G VSKA+GSAVFEMGNTKV+AAVYGPRE+QNKSQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNS  LLDLNYVEDSAGG DVTVG LPKLDKV+LLQMDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR
        KLP++ FE V  LA EGCKAIA  IR V+ E+TKQLEY R
Subjt:  KLPIDVFEDVMELAIEGCKAIATYIRNVMLEHTKQLEYHR

AT4G27490.1 3'-5'-exoribonuclease family protein4.3e-2128.31Show/hide
Query:  RQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILT
        R DGR   + R    + GAVS A+GSA  E GNTKV+ +V+GPRE   K+   S+   + C  +  NF++    +         E S ++ + +E  I+ 
Subjt:  RQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILT

Query:  HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDV
           P++ +D+F  VL++ G   S  I+ A+LALADAGI M D++T+ S   +  + ++D    E+        +  +P   ++T L +  +       + 
Subjt:  HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDV

Query:  MELAIEGCKAIATYIRNVM
        M+L ++    +   +R+ +
Subjt:  MELAIEGCKAIATYIRNVM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTCGTGACCCCCGAAGGACTTCGCCAAGACGGTCGCCGTCCCAGGGAGCTGAGGGAAATGCGTGCGGAAATTGGGGCTGTTTCTAAAGCAAATGGGTCTGCTGT
TTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCTAGAGAGGTCCAGAATAAGAGTCAACAAATGAGCAACCAAGCACTGGTGCGTTGTGAGTACACCA
TGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGAGACAGGCGATCCACAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAATGCATTCTAACACAT
TTAATGCCTCGGTCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACCAGATCAGCATGCATAAATGCTGCAACTCTGGCGCTTGCTGATGCTGGAAT
TCCAATGCGTGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCAATGCTTTGCTTGATTTGAATTATGTAGAAGATAGTGCTGGTGGCCCTGATGTCACTGTAG
GCTTTCTACCTAAGTTGGATAAAGTTACTCTTCTACAGATGGATGCTAAATTACCCATTGATGTATTTGAGGATGTGATGGAACTTGCAATTGAGGGCTGCAAAGCCATA
GCTACTTACATTCGAAATGTAATGTTAGAACATACAAAGCAACTCGAATATCATCGCGATGGATAG
mRNA sequenceShow/hide mRNA sequence
AACGAAAATTGAAACTTCAAACCTCCTACGGATCCTTTTCTCCTAAACCCTATTTCACTACCTCCGAGACGCTGCACTTCACCTCCCCACTCCTCTGCCCGGGGGCGCCG
CCGTACACTACACTCTCTGCTGCCACGGACCAGCCTTTCTACAAACTTTGCCGCTGCACCCTCCCTTTTGCACTCTCTCGTCTGTCTCTCCCAGTAATCAAAGTTACAAC
TTTCTTAGAAACACAGCGATTCAGCCCCACCTGTACCATTCTGTTCGCCAATGGAGTTCGTGACCCCCGAAGGACTTCGCCAAGACGGTCGCCGTCCCAGGGAGCTGAGG
GAAATGCGTGCGGAAATTGGGGCTGTTTCTAAAGCAAATGGGTCTGCTGTTTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCTAGAGAGGTCCAGAA
TAAGAGTCAACAAATGAGCAACCAAGCACTGGTGCGTTGTGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGAGACAGGCGATCCACAG
AGATATCTTTAGTTATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGGTCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACC
AGATCAGCATGCATAAATGCTGCAACTCTGGCGCTTGCTGATGCTGGAATTCCAATGCGTGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCAATGCTTTGCT
TGATTTGAATTATGTAGAAGATAGTGCTGGTGGCCCTGATGTCACTGTAGGCTTTCTACCTAAGTTGGATAAAGTTACTCTTCTACAGATGGATGCTAAATTACCCATTG
ATGTATTTGAGGATGTGATGGAACTTGCAATTGAGGGCTGCAAAGCCATAGCTACTTACATTCGAAATGTAATGTTAGAACATACAAAGCAACTCGAATATCATCGCGAT
GGATAGTCAAAGACTGTTTTGAGCATTCTTACCCAAAGGAAAGAGATTACAATTGTTTTAAGAGACAATGAAGTTATTGATGCCTTTTTCTCCCATCTCTCAGTTGTGAA
TTAATACCTGTCGCGCCCTAATTAATGTACAGAATGTGTTTTTCTATTTCCC
Protein sequenceShow/hide protein sequence
MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTH
LMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAI
ATYIRNVMLEHTKQLEYHRDG