; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G09330 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G09330
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRad60-SLD domain-containing protein
Genome locationChr5:7902395..7904377
RNA-Seq ExpressionCSPI05G09330
SyntenyCSPI05G09330
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647971.1 hypothetical protein Csa_000113 [Cucumis sativus]7.8e-9363.94Show/hide
Query:  LVSKGVELLRASLDSNKVLTDMFYYKLDLSTKPGIAEEWIELFMHTQSPNLDNLRIRFLILSLPVSRPIILLPLLFVTHSFDNVYPSLPSLFLTLSITLL
        L ++GVELLRASLDSNKVLTDMFYYKLDLSTKPGIAE                                                             +L
Subjt:  LVSKGVELLRASLDSNKVLTDMFYYKLDLSTKPGIAEEWIELFMHTQSPNLDNLRIRFLILSLPVSRPIILLPLLFVTHSFDNVYPSLPSLFLTLSITLL

Query:  QSYSVFPIPFSLFPYSSPNPFSHSLIRIRHTYVPNGSWIPSFKLSLVSLNADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKI
        Q++                                               ADFAEEFEPLFDYSRVKPPSVV LDD+ITTLDEDSDADKSP PFAKRAKI
Subjt:  QSYSVFPIPFSLFPYSSPNPFSHSLIRIRHTYVPNGSWIPSFKLSLVSLNADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKI

Query:  VNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYS
        VNLAATSSVNGNPKEKQVEIEHKEEE LSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYS
Subjt:  VNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYS

Query:  KERAKVVRIVVSVRNSDKEELRKCRMLVVY
        KERAKVVRIVVSVRNSDKEELRKCRMLV Y
Subjt:  KERAKVVRIVVSVRNSDKEELRKCRMLVVY

KGN52648.2 hypothetical protein Csa_008468 [Cucumis sativus]1.1e-5774.16Show/hide
Query:  ADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKK
        AD AEEFEPLFDYSRV+PPSVVCLD          DADKSP PF KRAKIVN AATSSVNGNPKEKQVEIE KEE+WL PPPKVLVDA+NR  +DSTLK+
Subjt:  ADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKK

Query:  LRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV
        LRLKKQE A VALS KN  RE +ESAKVDVGNTS D L+PDLDVQT + SKERAK   IV+SVR+SDKEEL++ R+ V
Subjt:  LRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV

XP_004135076.1 uncharacterized protein LOC101214853 [Cucumis sativus]1.7e-6076.4Show/hide
Query:  ADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKK
        AD AEEFEPLFDYSRV+PPSVVCLD      DEDSDADKSP PF KRAKIVN AATSSVNGNPKEKQVEIE KEE+WL PPPKVLVDA+NR  +DSTLK+
Subjt:  ADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKK

Query:  LRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV
        LRLKKQE A VALS KN  RE +ESAKVDVGNTS D L+PDLDVQT + SKERAK   IV+SVR+SDKEEL++ R+ V
Subjt:  LRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV

XP_008446647.1 PREDICTED: uncharacterized protein LOC103489317 isoform X1 [Cucumis melo]1.1e-6277.53Show/hide
Query:  ADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKK
        AD AEEFEPLFDYSRV+PPSVVCLD      DEDSDADKSP PF KRAKI NLAATSSVNGNPKEKQVEIE  EE+WL PPPKVLVD  NRRG+DSTLK+
Subjt:  ADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKK

Query:  LRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV
        LRLKKQE A VALS KN  RE +ESAKVDVGNTSKDSL+PDLDVQT + SKERAK   IV+SVR+SDKEEL++ R+ V
Subjt:  LRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV

XP_038891511.1 uncharacterized protein LOC120080907 [Benincasa hispida]2.2e-5573.03Show/hide
Query:  ADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKK
        AD AEEFEPLFDYSRV+P SVVCLD      DEDSDADKSP PF+KR KIVN AATS V+ NPKEKQVEIE KEE+WL PPPKVLVDA+N  G+DSTLK+
Subjt:  ADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKK

Query:  LRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV
        LRLKKQE A VALS KN  RE +ESAKVDVGN   DSL+PDLDVQT + SKERAK   IV+SVR+SDKEEL++ R+ V
Subjt:  LRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV

TrEMBL top hitse value%identityAlignment
A0A0A0KQ74 Rad60-SLD domain-containing protein2.2e-16594.85Show/hide
Query:  LVSKGVELLRASLDSNKVLTDMFYYKLDLSTKPGIAEEWIELFMHTQSPNLDNLRIRFLILSLPVSRPIILLPLLFVTHSFDNVYPSLPSLFLTLSITLL
        L ++GVELLRASLDSNKVLTDMFYYKLDLSTKPGIAEEWIELFMHTQSPNLDNLRI         SRPIILLPLLFVTHSFDNVYPSLPSLFLTLSITLL
Subjt:  LVSKGVELLRASLDSNKVLTDMFYYKLDLSTKPGIAEEWIELFMHTQSPNLDNLRIRFLILSLPVSRPIILLPLLFVTHSFDNVYPSLPSLFLTLSITLL

Query:  QSYSVFPIPFSLFPYSSPNPFSHSLIRIRHTYVPNGSWIPSFKLSLVSLNADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKI
        QSYSVFPIPFSLFPYSSPNPFSHSLIRIRHTYVPNGSWIPSFKLSLVSLNADFAEEFEPLFDYSRVKPPSVV LDD+ITTLDEDSDADKSP PFAKRAKI
Subjt:  QSYSVFPIPFSLFPYSSPNPFSHSLIRIRHTYVPNGSWIPSFKLSLVSLNADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKI

Query:  VNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYS
        VNLAATSSVNGNPKEKQVEIEHKEEE LSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYS
Subjt:  VNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYS

Query:  KERAKVVRIVVSVRNSDKEELRKCRMLVVY
        KERAKVVRIVVSVRNSDKEELRKCRMLV Y
Subjt:  KERAKVVRIVVSVRNSDKEELRKCRMLVVY

A0A0A0KWH7 Rad60-SLD domain-containing protein8.5e-6176.4Show/hide
Query:  ADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKK
        AD AEEFEPLFDYSRV+PPSVVCLD      DEDSDADKSP PF KRAKIVN AATSSVNGNPKEKQVEIE KEE+WL PPPKVLVDA+NR  +DSTLK+
Subjt:  ADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKK

Query:  LRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV
        LRLKKQE A VALS KN  RE +ESAKVDVGNTS D L+PDLDVQT + SKERAK   IV+SVR+SDKEEL++ R+ V
Subjt:  LRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV

A0A1S3BF31 uncharacterized protein LOC103489317 isoform X15.3e-6377.53Show/hide
Query:  ADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKK
        AD AEEFEPLFDYSRV+PPSVVCLD      DEDSDADKSP PF KRAKI NLAATSSVNGNPKEKQVEIE  EE+WL PPPKVLVD  NRRG+DSTLK+
Subjt:  ADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKK

Query:  LRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV
        LRLKKQE A VALS KN  RE +ESAKVDVGNTSKDSL+PDLDVQT + SKERAK   IV+SVR+SDKEEL++ R+ V
Subjt:  LRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV

A0A5A7SVU4 Putative Ubiquitin-like superfamily protein5.3e-6377.53Show/hide
Query:  ADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKK
        AD AEEFEPLFDYSRV+PPSVVCLD      DEDSDADKSP PF KRAKI NLAATSSVNGNPKEKQVEIE  EE+WL PPPKVLVD  NRRG+DSTLK+
Subjt:  ADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKK

Query:  LRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV
        LRLKKQE A VALS KN  RE +ESAKVDVGNTSKDSL+PDLDVQT + SKERAK   IV+SVR+SDKEEL++ R+ V
Subjt:  LRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV

A0A6J1JEF8 uncharacterized protein LOC1114836581.4e-4764.04Show/hide
Query:  ADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKK
        AD+AEEFEPLF+YSRV P SV CLD      +EDSDA  SP PF+KR++I+N A TS V+GNPKEKQVEIE +EE+WL PPPKV VDAKN  G+DSTLK+
Subjt:  ADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKK

Query:  LRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV
        LRL K E A V LS KN  RE +ESAK+DVGNT +D L+P LD Q  + SKERAK   IV+SVR+SDKEEL++ R+ +
Subjt:  LRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G68185.1 Ubiquitin-like superfamily protein7.7e-1432.53Show/hide
Query:  EEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLK
        E+ EPLFDY RV+P + VC+D        D D D S TP  K+AK      + +V     + +V     +++WL PPPKV+ D      +DST+K LR K
Subjt:  EEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLK

Query:  KQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEE
        K E      +  +  +E +ESAK +V    ++S  P  +    L S+      +IV+++++ D ++
Subjt:  KQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATACTGTTTGTTTGAGTTACTTTATGGGGTTTTGGTCTCAAAGGGCGTGGAGTTGCTGAGGGCTTCTCTTGATTCGAACAAGGTGCTCACGGACATGTTTTATTA
CAAGCTTGACCTCTCAACAAAGCCTGGTATAGCAGAGGAATGGATTGAGCTATTTATGCACACTCAGAGCCCAAATTTGGATAACCTTAGGATCAGGTTCCTAATCCTTT
CTCTTCCTGTCAGTAGGCCGATAATCCTTCTCCCTTTACTCTTTGTTACTCACTCCTTCGATAATGTTTATCCCTCTCTTCCATCACTGTTTCTTACTCTTTCGATAACC
CTTCTCCAATCCTACTCCGTCTTTCCCATCCCTTTTTCCCTCTTTCCCTACTCTTCTCCGAATCCGTTCTCTCATTCCCTTATCCGAATCCGTCATACGTACGTCCCGAA
TGGGTCTTGGATTCCCTCCTTCAAACTTTCCTTGGTTTCGTTGAATGCGGATTTCGCTGAAGAATTTGAACCCTTGTTCGATTACAGCCGCGTTAAGCCTCCCTCCGTTG
TTTGTCTCGATGATAAAATAACAACATTAGACGAGGATTCAGACGCAGACAAATCTCCGACGCCTTTTGCAAAGCGAGCAAAGATTGTGAATCTGGCGGCTACGAGTTCG
GTGAATGGTAACCCAAAAGAAAAACAAGTGGAAATTGAACATAAAGAGGAAGAATGGCTTTCTCCTCCACCGAAAGTGTTAGTTGATGCAAAGAATAGGCGTGGGAAAGA
TTCCACATTGAAGAAGTTAAGGTTAAAGAAGCAAGAGTCGGCCTTTGTTGCTTTATCAACTAAAAACTTCCCGCGAGAAGCAAAGGAATCTGCAAAAGTGGATGTAGGAA
ACACGTCCAAGGACTCTCTGAAACCTGATTTGGACGTCCAAACTTCTCTTTATTCTAAAGAAAGAGCAAAAGTTGTAAGAATTGTTGTTTCTGTACGCAACAGTGACAAG
GAAGAGCTCAGAAAGTGTCGCATGCTTGTGGTATATTCTCGTCCATCTCTGCGTGTTGTTCACAACTCGCAATTGGCATTCTTTAATTGCAACCATCTTGTTGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATATACTGTTTGTTTGAGTTACTTTATGGGGTTTTGGTCTCAAAGGGCGTGGAGTTGCTGAGGGCTTCTCTTGATTCGAACAAGGTGCTCACGGACATGTTTTATTA
CAAGCTTGACCTCTCAACAAAGCCTGGTATAGCAGAGGAATGGATTGAGCTATTTATGCACACTCAGAGCCCAAATTTGGATAACCTTAGGATCAGGTTCCTAATCCTTT
CTCTTCCTGTCAGTAGGCCGATAATCCTTCTCCCTTTACTCTTTGTTACTCACTCCTTCGATAATGTTTATCCCTCTCTTCCATCACTGTTTCTTACTCTTTCGATAACC
CTTCTCCAATCCTACTCCGTCTTTCCCATCCCTTTTTCCCTCTTTCCCTACTCTTCTCCGAATCCGTTCTCTCATTCCCTTATCCGAATCCGTCATACGTACGTCCCGAA
TGGGTCTTGGATTCCCTCCTTCAAACTTTCCTTGGTTTCGTTGAATGCGGATTTCGCTGAAGAATTTGAACCCTTGTTCGATTACAGCCGCGTTAAGCCTCCCTCCGTTG
TTTGTCTCGATGATAAAATAACAACATTAGACGAGGATTCAGACGCAGACAAATCTCCGACGCCTTTTGCAAAGCGAGCAAAGATTGTGAATCTGGCGGCTACGAGTTCG
GTGAATGGTAACCCAAAAGAAAAACAAGTGGAAATTGAACATAAAGAGGAAGAATGGCTTTCTCCTCCACCGAAAGTGTTAGTTGATGCAAAGAATAGGCGTGGGAAAGA
TTCCACATTGAAGAAGTTAAGGTTAAAGAAGCAAGAGTCGGCCTTTGTTGCTTTATCAACTAAAAACTTCCCGCGAGAAGCAAAGGAATCTGCAAAAGTGGATGTAGGAA
ACACGTCCAAGGACTCTCTGAAACCTGATTTGGACGTCCAAACTTCTCTTTATTCTAAAGAAAGAGCAAAAGTTGTAAGAATTGTTGTTTCTGTACGCAACAGTGACAAG
GAAGAGCTCAGAAAGTGTCGCATGCTTGTGGTATATTCTCGTCCATCTCTGCGTGTTGTTCACAACTCGCAATTGGCATTCTTTAATTGCAACCATCTTGTTGTGTGA
Protein sequenceShow/hide protein sequence
MIYCLFELLYGVLVSKGVELLRASLDSNKVLTDMFYYKLDLSTKPGIAEEWIELFMHTQSPNLDNLRIRFLILSLPVSRPIILLPLLFVTHSFDNVYPSLPSLFLTLSIT
LLQSYSVFPIPFSLFPYSSPNPFSHSLIRIRHTYVPNGSWIPSFKLSLVSLNADFAEEFEPLFDYSRVKPPSVVCLDDKITTLDEDSDADKSPTPFAKRAKIVNLAATSS
VNGNPKEKQVEIEHKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDK
EELRKCRMLVVYSRPSLRVVHNSQLAFFNCNHLVV