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CSPI05G09480 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G09480
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTranscription termination factor MTERF5
Genome locationChr5:7952795..7953310
RNA-Seq ExpressionCSPI05G09480
SyntenyCSPI05G09480
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034116.1 transcription termination factor MTERF2 [Cucumis melo var. makuwa]1.8e-6375Show/hide
Query:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL
        M+KVDR+I  VKTVKELGIEPKA  FVYA+ VR +MS+STWKKKI+V+KSLGWS+ EIFT FKR P  L  SEE +RDVADFCFNT KLDPGT+IS P+L
Subjt:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL

Query:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL
        F  S DKRLRPRYKVLE+LK+KNLLKNKKIA +LV GE  FVE YV+KHLDEIP LMDIY GNV AET SVL
Subjt:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL

KAE8647981.1 hypothetical protein Csa_000499 [Cucumis sativus]2.7e-8898.84Show/hide
Query:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL
        MRKVDRMIQVVKTVKELGIEPKACMFVYALKVR TMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNT+KLDPGTVISNPRL
Subjt:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL

Query:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL
        FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL
Subjt:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL

XP_011654901.1 uncharacterized protein LOC101206293 [Cucumis sativus]5.5e-6577.91Show/hide
Query:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL
        M  VDRMIQVVK VKELGIEPK+  F++AL+VR  MS+STWKKKI+VLKSLGWSENEI TLFKRQP+ LARSEEA RDVADFCFNT KLDP TVIS P+ 
Subjt:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL

Query:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL
        F YSVDK L PRYKVLE+LK+KNLLK++K+A  L   E +FVE YVLKHLDEIPKLMDIYRGNVTAETSSVL
Subjt:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL

XP_031741246.1 transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus]2.7e-8898.84Show/hide
Query:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL
        MRKVDRMIQVVKTVKELGIEPKACMFVYALKVR TMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNT+KLDPGTVISNPRL
Subjt:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL

Query:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL
        FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL
Subjt:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL

XP_038892570.1 transcription termination factor MTERF9, chloroplastic-like [Benincasa hispida]1.1e-6575.58Show/hide
Query:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL
        M+ VDRM+  VKTVKELGIEP A MFVYA+KV  +M +STWKKKI+VLKSLGWSE EIF  FKR+P+ LARSEE +RDVADFC NT KLDPGTVIS P+ 
Subjt:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL

Query:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL
        FM ++DKRLRPRYKVLE+LK KNLLKNKKIA +L++GE  FVENY+LKHLDEIP LMDIYRGNV AET SVL
Subjt:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL

TrEMBL top hitse value%identityAlignment
A0A1S3BDE1 transcription termination factor MTERF2, chloroplastic-like8.6e-6475Show/hide
Query:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL
        M+KVDR+I  VKTVKELGIEPKA  FVYA+ VR +MS+STWKKKI+V+KSLGWS+ EIFT FKR P  L  SEE +RDVADFCFNT KLDPGT+IS P+L
Subjt:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL

Query:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL
        F  S DKRLRPRYKVLE+LK+KNLLKNKKIA +LV GE  FVE YV+KHLDEIP LMDIY GNV AET SVL
Subjt:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL

A0A1S3BEQ3 uncharacterized protein LOC1034888659.5e-6372.67Show/hide
Query:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL
        MRKVDRMI+VVKTVKELGIEPKA MFV+AL++R ++S+STWKKKI+V+KSLGWSE EIFT FK+ P  L  SEE +RDVADFCFNT KLDPG+VI  P++
Subjt:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL

Query:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL
        F  SVDKRL+PRYKVLE+LK+KNLLKN  IA +LV+ E  FV+ +V++HLDEIP LMDIYRGNVTAET SVL
Subjt:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL

A0A5A7SW09 Transcription termination factor MTERF28.6e-6475Show/hide
Query:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL
        M+KVDR+I  VKTVKELGIEPKA  FVYA+ VR +MS+STWKKKI+V+KSLGWS+ EIFT FKR P  L  SEE +RDVADFCFNT KLDPGT+IS P+L
Subjt:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL

Query:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL
        F  S DKRLRPRYKVLE+LK+KNLLKNKKIA +LV GE  FVE YV+KHLDEIP LMDIY GNV AET SVL
Subjt:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL

A0A5D3CWA2 Transcription termination factor MTERF59.5e-6372.67Show/hide
Query:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL
        MRKVDRMI+VVKTVKELGIEPKA MFV+AL++R ++S+STWKKKI+V+KSLGWSE EIFT FK+ P  L  SEE +RDVADFCFNT KLDPG+VI  P++
Subjt:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL

Query:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL
        F  SVDKRL+PRYKVLE+LK+KNLLKN  IA +LV+ E  FV+ +V++HLDEIP LMDIYRGNVTAET SVL
Subjt:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL

A0A5D3CXX8 Transcription termination factor MTERF28.6e-6475Show/hide
Query:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL
        M+KVDR+I  VKTVKELGIEPKA  FVYA+ VR +MS+STWKKKI+V+KSLGWS+ EIFT FKR P  L  SEE +RDVADFCFNT KLDPGT+IS P+L
Subjt:  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRL

Query:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL
        F  S DKRLRPRYKVLE+LK+KNLLKNKKIA +LV GE  FVE YV+KHLDEIP LMDIY GNV AET SVL
Subjt:  FMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21150.1 Mitochondrial transcription termination factor family protein3.5e-1729.38Show/hide
Query:  RMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRLFMYSV
        R  +V+  V   G +PK   FV+A+      SES  ++K  + +  GWS+ +      R P  +  S+E +    ++  N + L    +++ P +   S+
Subjt:  RMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRLFMYSV

Query:  DKRLRPRYKVLELLKLKNLLKNKKI--APLLVRGESEFVENYVLKHLDEIPKLMDIYRGN
        +KR++PR +V+ LL  K L+K + I    +L    SEF++ +VLK+ DE+P+L+  +  N
Subjt:  DKRLRPRYKVLELLKLKNLLKNKKI--APLLVRGESEFVENYVLKHLDEIPKLMDIYRGN

AT1G61970.1 Mitochondrial transcription termination factor family protein1.9e-1527.78Show/hide
Query:  DRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSE-------------------------------
        ++  + +K V E+G +P    FV AL+V   M+E T ++K+ + KSLG+   ++++ FK+ P+SL  SE                               
Subjt:  DRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSE-------------------------------

Query:  ----EALRDVADFCFNTVKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLKLKNLLKNK--KIAPLLVRGESEFVENYVLKHLDE--IPKLMDIYRGN
            E ++   +F    +      V+SNP +F YS++KR+ PR  V++ L  K L++N+   I+ +L+  +  F+  YV  H+D+  + +LM IYR +
Subjt:  ----EALRDVADFCFNTVKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLKLKNLLKNK--KIAPLLVRGESEFVENYVLKHLDE--IPKLMDIYRGN

AT1G61970.2 Mitochondrial transcription termination factor family protein1.9e-1527.78Show/hide
Query:  DRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSE-------------------------------
        ++  + +K V E+G +P    FV AL+V   M+E T ++K+ + KSLG+   ++++ FK+ P+SL  SE                               
Subjt:  DRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSE-------------------------------

Query:  ----EALRDVADFCFNTVKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLKLKNLLKNK--KIAPLLVRGESEFVENYVLKHLDE--IPKLMDIYRGN
            E ++   +F    +      V+SNP +F YS++KR+ PR  V++ L  K L++N+   I+ +L+  +  F+  YV  H+D+  + +LM IYR +
Subjt:  ----EALRDVADFCFNTVKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLKLKNLLKNK--KIAPLLVRGESEFVENYVLKHLDE--IPKLMDIYRGN

AT1G61990.1 Mitochondrial transcription termination factor family protein1.6e-1426.67Show/hide
Query:  VKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQP-------------------MSLARSE----------------EA
        +K V E+G +P    FV AL++   MSE T ++K+ V +SLG++ ++++ +FK+ P                   +  +R+E                E+
Subjt:  VKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQP-------------------MSLARSE----------------EA

Query:  LRDVADFCFNTVKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLKLKNLLKN----KKIAPLLVRGESEFVENYVLKHLDEIPKLMDIY-RGNVT
        ++   +F    +K     ++ +P++F YS++KR+ PR  +LE L  K LL+       ++ +L   +  F++ YV+KH + +P LM I+ +G+V+
Subjt:  LRDVADFCFNTVKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLKLKNLLKN----KKIAPLLVRGESEFVENYVLKHLDEIPKLMDIY-RGNVT

AT1G62010.1 Mitochondrial transcription termination factor family protein8.0e-1428.12Show/hide
Query:  VKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSE-----------------------------------EA
        +K V E+G +P    FV+AL +   MS+ T ++KI V +S+G+S ++++ +FK+ P SL  SE                                   EA
Subjt:  VKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSE-----------------------------------EA

Query:  LRDVADFCFNTVKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLKLKNLLKNK--KIAPLLVRGESEFVENYVLKHLDE--IPKLMDIYRGN
        ++   +F    +      V S P++  YS++KR  PR  V+++L  K LL+++   ++ +L      F+  YV KH D+  + +LM I+ GN
Subjt:  LRDVADFCFNTVKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLKLKNLLKNK--KIAPLLVRGESEFVENYVLKHLDE--IPKLMDIYRGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAAAGGTTGATAGAATGATCCAAGTAGTGAAAACGGTTAAAGAATTGGGCATTGAACCAAAGGCCTGTATGTTTGTTTATGCACTGAAAGTAAGGGGTACAATGAG
TGAATCAACTTGGAAGAAGAAAATAGATGTTTTGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACACTATTTAAGAGACAGCCAATGTCTTTAGCTCGTTCAGAGG
AGGCACTGAGGGATGTTGCAGATTTCTGTTTCAACACTGTAAAATTGGATCCAGGAACAGTAATTTCTAATCCTAGGTTATTCATGTATTCAGTCGACAAGCGGCTCCGG
CCAAGGTACAAAGTTCTTGAGCTTTTGAAGCTCAAGAATCTACTTAAGAACAAAAAAATTGCTCCCCTCCTTGTACGAGGAGAGAGTGAATTTGTGGAGAATTATGTTCT
TAAGCATTTGGATGAAATACCAAAGCTAATGGACATATATCGAGGCAATGTCACAGCCGAAACCAGTTCTGTTCTA
mRNA sequenceShow/hide mRNA sequence
ATGCGAAAGGTTGATAGAATGATCCAAGTAGTGAAAACGGTTAAAGAATTGGGCATTGAACCAAAGGCCTGTATGTTTGTTTATGCACTGAAAGTAAGGGGTACAATGAG
TGAATCAACTTGGAAGAAGAAAATAGATGTTTTGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACACTATTTAAGAGACAGCCAATGTCTTTAGCTCGTTCAGAGG
AGGCACTGAGGGATGTTGCAGATTTCTGTTTCAACACTGTAAAATTGGATCCAGGAACAGTAATTTCTAATCCTAGGTTATTCATGTATTCAGTCGACAAGCGGCTCCGG
CCAAGGTACAAAGTTCTTGAGCTTTTGAAGCTCAAGAATCTACTTAAGAACAAAAAAATTGCTCCCCTCCTTGTACGAGGAGAGAGTGAATTTGTGGAGAATTATGTTCT
TAAGCATTTGGATGAAATACCAAAGCTAATGGACATATATCGAGGCAATGTCACAGCCGAAACCAGTTCTGTTCTA
Protein sequenceShow/hide protein sequence
MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRGTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTVKLDPGTVISNPRLFMYSVDKRLR
PRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL