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CSPI05G10620 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G10620
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionElf4 domain-containing protein
Genome locationChr5:9061467..9062730
RNA-Seq ExpressionCSPI05G10620
SyntenyCSPI05G10620
Gene Ontology termsGO:0000122 - negative regulation of transcription by RNA polymerase II (biological process)
GO:0009649 - entrainment of circadian clock (biological process)
GO:0009909 - regulation of flower development (biological process)
GO:0010017 - red or far-red light signaling pathway (biological process)
GO:0010114 - response to red light (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0048573 - photoperiodism, flowering (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005667 - transcription factor complex (cellular component)
GO:0042803 - protein homodimerization activity (molecular function)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031907.1 protein EARLY FLOWERING 4 [Cucumis melo var. makuwa]1.3e-6197.67Show/hide
Query:  MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MADNNPRRKSKMKPSATTTTTTTTTTSDD PH AFPDEYD EVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTAFHNHKPRSGKRGTTNPDA
        YSDFSSDFSTAFHNHKPRSGKRGTTNPDA
Subjt:  YSDFSSDFSTAFHNHKPRSGKRGTTNPDA

KAE8648025.1 hypothetical protein Csa_005775 [Cucumis sativus]1.1e-5799.15Show/hide
Query:  MKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTA
        MKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTA
Subjt:  MKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTA

Query:  FHNHKPRSGKRGTTNPDA
        FHNHKPR+GKRGTTNPDA
Subjt:  FHNHKPRSGKRGTTNPDA

XP_004149248.1 protein EARLY FLOWERING 4 [Cucumis sativus]7.8e-6499.22Show/hide
Query:  MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTAFHNHKPRSGKRGTTNPDA
        YSDFSSDFSTAFHNHKPR+GKRGTTNPDA
Subjt:  YSDFSSDFSTAFHNHKPRSGKRGTTNPDA

XP_008463236.2 PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo]1.3e-6197.67Show/hide
Query:  MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MADNNPRRKSKMKPSATTTTTTTTTTSDD PH AFPDEYD EVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTAFHNHKPRSGKRGTTNPDA
        YSDFSSDFSTAFHNHKPRSGKRGTTNPDA
Subjt:  YSDFSSDFSTAFHNHKPRSGKRGTTNPDA

XP_038892867.1 protein EARLY FLOWERING 4-like [Benincasa hispida]5.1e-5590.84Show/hide
Query:  MADNNPRRKSKMKPSA-TTTTTTTTTTSDDAPHHA-FPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVV
        MADNNPRRKSKMKPSA TTTTTTTTTTSDD PH   FPDEYD EVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVV
Subjt:  MADNNPRRKSKMKPSA-TTTTTTTTTTSDDAPHHA-FPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVV

Query:  SMYSDFSSDFSTAFHNHKPRSGKRGTTNPDA
        SMYSDFSSDFS+AF NHKPR+GKRG+ NP+A
Subjt:  SMYSDFSSDFSTAFHNHKPRSGKRGTTNPDA

TrEMBL top hitse value%identityAlignment
A0A0A0KM35 Elf4 domain-containing protein3.8e-6499.22Show/hide
Query:  MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTAFHNHKPRSGKRGTTNPDA
        YSDFSSDFSTAFHNHKPR+GKRGTTNPDA
Subjt:  YSDFSSDFSTAFHNHKPRSGKRGTTNPDA

A0A1S3CIT1 uncharacterized protein LOC1035014406.1e-6297.67Show/hide
Query:  MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MADNNPRRKSKMKPSATTTTTTTTTTSDD PH AFPDEYD EVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTAFHNHKPRSGKRGTTNPDA
        YSDFSSDFSTAFHNHKPRSGKRGTTNPDA
Subjt:  YSDFSSDFSTAFHNHKPRSGKRGTTNPDA

A0A5A7SR92 Protein EARLY FLOWERING 46.1e-6297.67Show/hide
Query:  MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MADNNPRRKSKMKPSATTTTTTTTTTSDD PH AFPDEYD EVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTAFHNHKPRSGKRGTTNPDA
        YSDFSSDFSTAFHNHKPRSGKRGTTNPDA
Subjt:  YSDFSSDFSTAFHNHKPRSGKRGTTNPDA

A0A6J1GYX8 protein EARLY FLOWERING 4-like4.4e-5286.05Show/hide
Query:  MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSK KPSATTTTTTTTTTSDD  H  FPDE D +VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTAFHNHKPRSGKRGTTNPDA
        YSDFSSDFS+ F+N+K R+GKRG++NPDA
Subjt:  YSDFSSDFSTAFHNHKPRSGKRGTTNPDA

A0A6J1IH33 protein EARLY FLOWERING 4-like2.6e-5286.05Show/hide
Query:  MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MA+ N RRKSK KPSATTTTTTTTTTSDD  H  FPDE DP+VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTAFHNHKPRSGKRGTTNPDA
        YSDFSSDFS+ F+NHK R+GKRG++NPDA
Subjt:  YSDFSSDFSTAFHNHKPRSGKRGTTNPDA

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 48.2e-2470.13Show/hide
Query:  DPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHK
        DP +W + D+ FRQVQSVLDRNR+LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+MYSD ++ FS+ FH  K
Subjt:  DPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHK

O80877 Protein ELF4-LIKE 11.4e-1551.16Show/hide
Query:  DPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSGKRGTT
        D EVW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ +YSD S +F+  F + + R+ K G T
Subjt:  DPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSGKRGTT

Q570U6 Protein ELF4-LIKE 41.2e-1147.14Show/hide
Query:  DPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  DPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

Q8S8F5 Protein ELF4-LIKE 33.8e-1339.33Show/hide
Query:  EYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSGKRGTTN
        + D ++  +F+++F QVQ++LD NR LI ++N+NH+S+IP N+  NV LI+ELN N+ +V  +Y D S++FS +           G  N
Subjt:  EYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSGKRGTTN

Q94BS8 Protein ELF4-LIKE 25.2e-1043.06Show/hide
Query:  EYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        + D ++  +F ++F QVQ +LD+NR LI ++N+NH+S+   ++  NV LI+ELN NI  V S+Y D S  F+
Subjt:  EYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 48.8e-1347.14Show/hide
Query:  DPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  DPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

AT1G17455.2 ELF4-like 48.8e-1347.14Show/hide
Query:  DPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  DPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

AT2G06255.1 ELF4-like 32.7e-1439.33Show/hide
Query:  EYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSGKRGTTN
        + D ++  +F+++F QVQ++LD NR LI ++N+NH+S+IP N+  NV LI+ELN N+ +V  +Y D S++FS +           G  N
Subjt:  EYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSGKRGTTN

AT2G29950.1 ELF4-like 11.0e-1651.16Show/hide
Query:  DPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSGKRGTT
        D EVW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ +YSD S +F+  F + + R+ K G T
Subjt:  DPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSGKRGTT

AT2G40080.1 Protein of unknown function (DUF1313)5.9e-2570.13Show/hide
Query:  DPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHK
        DP +W + D+ FRQVQSVLDRNR+LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+MYSD ++ FS+ FH  K
Subjt:  DPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGATAACAATCCCCGCCGCAAATCCAAAATGAAGCCTTCTGCAACCACCACCACTACCACTACCACCACCACCAGCGACGACGCCCCACATCACGCTTTCCCTGA
CGAATACGACCCCGAGGTATGGGCCTCTTTTGACCAAACCTTCCGCCAAGTCCAATCAGTGCTCGACAGAAACAGAACTCTCATTCAACAGGTGAATGAGAATCACCAAT
CTCGAATCCCAAGCAACATGGTTGACAACGTTGCTTTGATCCAAGAACTTAATGGAAACATCTCTAAAGTTGTTTCCATGTACTCTGATTTCTCCTCTGATTTCTCTACT
GCTTTCCATAACCACAAACCCAGAAGTGGTAAAAGAGGCACCACCAACCCAGATGCTTGA
mRNA sequenceShow/hide mRNA sequence
GTATAACCTAAACATACAACCATTCAAATTTATGGTTTTAGATAGTAACACCAATGGAGCATCTATTTGCTATGTATTTGAAGATTTATTTTATTTCACTTTGTAGTAGT
TTTGAATTGAAAAATTTGAGTGTTAAGATATAAAATTATTTATGTGTTGTAATTCTTTAATTCCCACGCGCTGTTAGTTTCGCGTGGGGGCAATGGCTGCACGTCCCGAG
CTACACCGATAATGGATCCTCTCAGTATTTAGTCATCACCATTCACCACCGCCTTTTTCCCTTCTTCAATCAAACCTTTCCCTTTTCTTTTCACAAAACTCAACCCAACT
CTCCAATACCAAACTACCCCTTTTCTTTTCATGGCCGATAACAATCCCCGCCGCAAATCCAAAATGAAGCCTTCTGCAACCACCACCACTACCACTACCACCACCACCAG
CGACGACGCCCCACATCACGCTTTCCCTGACGAATACGACCCCGAGGTATGGGCCTCTTTTGACCAAACCTTCCGCCAAGTCCAATCAGTGCTCGACAGAAACAGAACTC
TCATTCAACAGGTGAATGAGAATCACCAATCTCGAATCCCAAGCAACATGGTTGACAACGTTGCTTTGATCCAAGAACTTAATGGAAACATCTCTAAAGTTGTTTCCATG
TACTCTGATTTCTCCTCTGATTTCTCTACTGCTTTCCATAACCACAAACCCAGAAGTGGTAAAAGAGGCACCACCAACCCAGATGCTTGAACTATTCAACCCACGAAAAA
AAAAAAAACAAATTTCCCCAGTTATCCCATTTTCACTCCAGACCATTGTTTTTCTATCTGTTTCATCATCATTCAGAATCGTCATTTCAGAATCGTCATCAGAATCAGCA
TCAGCATTGGTTAGAAATAAAAGGTTGGTTAGTAGGTTGTGAGGGAAATGTGAGAGATTGAAGAACTTCTCACAGGTGGTGTATGTGTATGCTTGTGGTGGTGTGTTTTT
TTCTTTTATTTATATTAAAATGTGTTTCCTAATGTAATAGTTAATGCATGGTTCCATCATCATTATCATTAATCATCAAAGATGACTGTCAGAGTTCATTGTCATCATCT
TTTTCTTCGTCTTCTTTAGTTTACTTCTCCTAAAAGATTGGAGAATTTTATTATCAGCAGTGGAGGATAAAAAAAGAACATGATATTTATTATTTATGGCAAACAAAAGT
GCATCAGTTCTGATATAAAATAAAGACCCTTTTGAGTTTTCACGCCACAGGAGA
Protein sequenceShow/hide protein sequence
MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFST
AFHNHKPRSGKRGTTNPDA