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CSPI05G11010 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G11010
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr5:9561780..9562565
RNA-Seq ExpressionCSPI05G11010
SyntenyCSPI05G11010
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055910.1 Copia protein [Cucumis melo var. makuwa]4.3e-3867.18Show/hide
Query:  KKFYLKKNDLALSHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVASTSSD
        KKFYL++ DLALS LC LMS LQ  I D+        NCKLHGHK ANCPTIEC YCHKRGH LDN PT  P P GHSHKPK S K     +VVA+TSSD
Subjt:  KKFYLKKNDLALSHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVASTSSD

Query:  ITALQNLQLNDLHDLLKHVISSNSTALAVTP
        IT   +LQL DLHDLLK VI S STALAVTP
Subjt:  ITALQNLQLNDLHDLLKHVISSNSTALAVTP

TYK28114.1 Copia protein [Cucumis melo var. makuwa]5.6e-3866.41Show/hide
Query:  KKFYLKKNDLALSHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVASTSSD
        KKFYL++ DLALS LC LMS LQ  I D+        NCKLHGHK ANCPTIEC YCHKRGH LDN PT  P P GHSHKPK S K     +V+A+TSSD
Subjt:  KKFYLKKNDLALSHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVASTSSD

Query:  ITALQNLQLNDLHDLLKHVISSNSTALAVTP
        IT   +LQL DLHDLLK VI S STALAVTP
Subjt:  ITALQNLQLNDLHDLLKHVISSNSTALAVTP

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]1.2e-3554.76Show/hide
Query:  ATLCHLSTLPS------KKFYLKKNDLALSHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPCPHGHSHKPKS
        A L H + LPS      +  + +K    +S L   ++L   H+       +   NCKLHGHK ANCPTIEC YCHKRGHILDN PTR P P GHSHKPK 
Subjt:  ATLCHLSTLPS------KKFYLKKNDLALSHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPCPHGHSHKPKS

Query:  SSKTSYQPIVVASTSSDITALQNLQLNDLHDLLKHVISSNSTALAVTP-----DGASDWYRMEGGMII
        S K     +V A+TSSDIT   +LQL DLHDLLK VISS STALAVTP     DG SDW+  EGG II
Subjt:  SSKTSYQPIVVASTSSDITALQNLQLNDLHDLLKHVISSNSTALAVTP-----DGASDWYRMEGGMII

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]9.5e-3858.33Show/hide
Query:  ATLCHLSTLPS-----KKFYLKKNDLAL-SHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPCPHGHSHKPKS
        A L H + LPS     ++   ++N L + S L   ++L   H      S +   NCKLHGHK ANCPTIEC YCHKRGHILDN PTR P P G  +KPKS
Subjt:  ATLCHLSTLPS-----KKFYLKKNDLAL-SHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPCPHGHSHKPKS

Query:  SSKTSYQPIVVASTSSDITALQNLQLNDLHDLLKHVISSNSTALAVTP-----DGASDWYRMEGGMII
        S+K S  PIV A+T SDIT  QN QLNDLHDLLK VISSNSTALAVTP     +GASDWY  EGG II
Subjt:  SSKTSYQPIVVASTSSDITALQNLQLNDLHDLLKHVISSNSTALAVTP-----DGASDWYRMEGGMII

XP_031742280.1 uncharacterized protein LOC116404145 [Cucumis sativus]8.5e-5595.58Show/hide
Query:  MSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVASTSSDITALQNLQLNDLHDLLKH
        MSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEY HKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVA+TS DITALQN QLN+LHDLLKH
Subjt:  MSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVASTSSDITALQNLQLNDLHDLLKH

Query:  VISSNSTALAVTP
        VISSNSTALAVTP
Subjt:  VISSNSTALAVTP

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882005.6e-3654.76Show/hide
Query:  ATLCHLSTLPS------KKFYLKKNDLALSHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPCPHGHSHKPKS
        A L H + LPS      +  + +K    +S L   ++L   H+       +   NCKLHGHK ANCPTIEC YCHKRGHILDN PTR P P GHSHKPK 
Subjt:  ATLCHLSTLPS------KKFYLKKNDLALSHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPCPHGHSHKPKS

Query:  SSKTSYQPIVVASTSSDITALQNLQLNDLHDLLKHVISSNSTALAVTP-----DGASDWYRMEGGMII
        S K     +V A+TSSDIT   +LQL DLHDLLK VISS STALAVTP     DG SDW+  EGG II
Subjt:  SSKTSYQPIVVASTSSDITALQNLQLNDLHDLLKHVISSNSTALAVTP-----DGASDWYRMEGGMII

A0A5A7SI05 Putative mitochondrial protein2.7e-3055.06Show/hide
Query:  MNQFVLHYYIATLCHLSTLPS-----KKFYLKKNDLAL-SHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPC
        MN FVL      LC++  LPS     ++  L++  L + S L   ++L   H+     + L   NCKLH HK ANCPT EC YCHKRGHILD  PTR P 
Subjt:  MNQFVLHYYIATLCHLSTLPS-----KKFYLKKNDLAL-SHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPC

Query:  PHGHSHKPKSSSKTSYQPIVVASTSSDITALQNLQLNDLHDLLKHVISSNSTALAVTP
        P GHS KPK SSKT    +VVA+T SDIT   +LQL DLHDLLK VISSNSTALAVTP
Subjt:  PHGHSHKPKSSSKTSYQPIVVASTSSDITALQNLQLNDLHDLLKHVISSNSTALAVTP

A0A5A7UL86 Copia protein2.1e-3867.18Show/hide
Query:  KKFYLKKNDLALSHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVASTSSD
        KKFYL++ DLALS LC LMS LQ  I D+        NCKLHGHK ANCPTIEC YCHKRGH LDN PT  P P GHSHKPK S K     +VVA+TSSD
Subjt:  KKFYLKKNDLALSHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVASTSSD

Query:  ITALQNLQLNDLHDLLKHVISSNSTALAVTP
        IT   +LQL DLHDLLK VI S STALAVTP
Subjt:  ITALQNLQLNDLHDLLKHVISSNSTALAVTP

A0A5D3C669 Putative mitochondrial protein2.7e-3055.06Show/hide
Query:  MNQFVLHYYIATLCHLSTLPS-----KKFYLKKNDLAL-SHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPC
        MN FVL      LC++  LPS     ++  L++  L + S L   ++L   H+     + L   NCKLH HK ANCPT EC YCHKRGHILD  PTR P 
Subjt:  MNQFVLHYYIATLCHLSTLPS-----KKFYLKKNDLAL-SHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPC

Query:  PHGHSHKPKSSSKTSYQPIVVASTSSDITALQNLQLNDLHDLLKHVISSNSTALAVTP
        P GHS KPK SSKT    +VVA+T SDIT   +LQL DLHDLLK VISSNSTALAVTP
Subjt:  PHGHSHKPKSSSKTSYQPIVVASTSSDITALQNLQLNDLHDLLKHVISSNSTALAVTP

A0A5D3DX62 Copia protein2.7e-3866.41Show/hide
Query:  KKFYLKKNDLALSHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVASTSSD
        KKFYL++ DLALS LC LMS LQ  I D+        NCKLHGHK ANCPTIEC YCHKRGH LDN PT  P P GHSHKPK S K     +V+A+TSSD
Subjt:  KKFYLKKNDLALSHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSYQPIVVASTSSD

Query:  ITALQNLQLNDLHDLLKHVISSNSTALAVTP
        IT   +LQL DLHDLLK VI S STALAVTP
Subjt:  ITALQNLQLNDLHDLLKHVISSNSTALAVTP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCAGTTTGTGCTGCACTATTACATCGCAACCCTTTGCCATCTCTCGACACTGCCATCCAAGAAATTTTATTTGAAGAAAAATGACTTGGCATTGTCTCACCTCTG
CCTTCTGATGTCGCTCTTGCAACCACACATCCACGACTTGCTAATGAGTCCACTTTCTGCAAATAATTGTAAGCTTCATGGTCATAAGCTTGCTAATTGCCCTACTATTG
AGTGTGAGTATTGTCACAAGCGAGGTCACATCTTGGACAACTATCCCACTCGTTCACCCTGCCCTCATGGTCACTCACATAAACCCAAGTCTTCTTCAAAAACTAGTTAT
CAACCTATTGTTGTTGCTTCCACCTCATCTGATATCACTGCACTTCAGAACTTACAGCTAAATGATCTTCATGACTTACTGAAACATGTGATCTCTTCCAACTCTACAGC
TCTTGCTGTCACTCCAGACGGGGCAAGTGATTGGTACAGGATGGAAGGTGGGATGATTATT
mRNA sequenceShow/hide mRNA sequence
ATGAATCAGTTTGTGCTGCACTATTACATCGCAACCCTTTGCCATCTCTCGACACTGCCATCCAAGAAATTTTATTTGAAGAAAAATGACTTGGCATTGTCTCACCTCTG
CCTTCTGATGTCGCTCTTGCAACCACACATCCACGACTTGCTAATGAGTCCACTTTCTGCAAATAATTGTAAGCTTCATGGTCATAAGCTTGCTAATTGCCCTACTATTG
AGTGTGAGTATTGTCACAAGCGAGGTCACATCTTGGACAACTATCCCACTCGTTCACCCTGCCCTCATGGTCACTCACATAAACCCAAGTCTTCTTCAAAAACTAGTTAT
CAACCTATTGTTGTTGCTTCCACCTCATCTGATATCACTGCACTTCAGAACTTACAGCTAAATGATCTTCATGACTTACTGAAACATGTGATCTCTTCCAACTCTACAGC
TCTTGCTGTCACTCCAGACGGGGCAAGTGATTGGTACAGGATGGAAGGTGGGATGATTATT
Protein sequenceShow/hide protein sequence
MNQFVLHYYIATLCHLSTLPSKKFYLKKNDLALSHLCLLMSLLQPHIHDLLMSPLSANNCKLHGHKLANCPTIECEYCHKRGHILDNYPTRSPCPHGHSHKPKSSSKTSY
QPIVVASTSSDITALQNLQLNDLHDLLKHVISSNSTALAVTPDGASDWYRMEGGMII