CuGenDBv2

Gene ID	CSPI05G11480
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	40S ribosomal protein S26
Genome location	Chr5:10101962..10105024
RNA-Seq Expression	CSPI05G11480
Synteny	CSPI05G11480
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0019430 - removal of superoxide radicals (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004784 - superoxide dismutase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000892 - Ribosomal protein S26e IPR038551 - Ribosomal protein S26e superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

GAV62493.1 LOW QUALITY PROTEIN: Sod_Fe_N domain-containing protein/Ribosomal_S26e domain-containing protein/Sod_Fe_C domain-containing protein [Cephalotus follicularis]

1.3e-63

95.31

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNR+PPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAKPGQPGQAPRPVGAGNPTR
        FIRRR+D  KPGQPGQAPRP GAGNP R
Subjt:  FIRRREDQAKPGQPGQAPRPVGAGNPTR

XP_004146441.1 40S ribosomal protein S26-1 [Cucumis sativus]

2.9e-66

99.22

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAKPGQPGQAPRPVGAGNPTR
        FIRRREDQAKPGQPGQAPRPVGAGNP R
Subjt:  FIRRREDQAKPGQPGQAPRPVGAGNPTR

XP_022941874.1 40S ribosomal protein S26-3-like [Cucurbita moschata]

1.7e-63

94.66

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAK---PGQPGQAPRPVGAGNPTR
        F+RRR+DQ K   PGQPGQAPRPVGAGNP R
Subjt:  FIRRREDQAK---PGQPGQAPRPVGAGNPTR

XP_022943123.1 40S ribosomal protein S26-1-like [Cucurbita moschata]

7.8e-64

96.09

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAKPGQPGQAPRPVGAGNPTR
        FIRRR+DQ KPGQPGQAPRP GAG P R
Subjt:  FIRRREDQAKPGQPGQAPRPVGAGNPTR

XP_023529394.1 40S ribosomal protein S26-1-like [Cucurbita pepo subsp. pepo]

7.8e-64

96.09

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAKPGQPGQAPRPVGAGNPTR
        FIRRR+DQ KPGQPGQAPRP GAG P R
Subjt:  FIRRREDQAKPGQPGQAPRPVGAGNPTR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KM45 40S ribosomal protein S26

1.4e-66

99.22

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAKPGQPGQAPRPVGAGNPTR
        FIRRREDQAKPGQPGQAPRPVGAGNP R
Subjt:  FIRRREDQAKPGQPGQAPRPVGAGNPTR

A0A1S3C5M1 40S ribosomal protein S26

1.4e-66

99.22

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAKPGQPGQAPRPVGAGNPTR
        FIRRREDQAKPGQPGQAPRPVGAGNP R
Subjt:  FIRRREDQAKPGQPGQAPRPVGAGNPTR

A0A5A7VIJ0 40S ribosomal protein S26

1.4e-66

99.22

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAKPGQPGQAPRPVGAGNPTR
        FIRRREDQAKPGQPGQAPRPVGAGNP R
Subjt:  FIRRREDQAKPGQPGQAPRPVGAGNPTR

A0A6J1FWD9 40S ribosomal protein S26

3.8e-64

96.09

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAKPGQPGQAPRPVGAGNPTR
        FIRRR+DQ KPGQPGQAPRP GAG P R
Subjt:  FIRRREDQAKPGQPGQAPRPVGAGNPTR

A0A6J1JIN0 40S ribosomal protein S26

3.8e-64

96.09

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAKPGQPGQAPRPVGAGNPTR
        FIRRR+DQ KPGQPGQAPRP GAG P R
Subjt:  FIRRREDQAKPGQPGQAPRPVGAGNPTR

SwissProt top hits

e value

%identity

Alignment

O45499 40S ribosomal protein S26

1.5e-38

68.33

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y QY LPKLY K+ YC++CAIHS VVR RSR  RR+R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAKPGQPGQAPRP
        F  +R   A+PG PG  PRP
Subjt:  FIRRREDQAKPGQPGQAPRP

P49206 40S ribosomal protein S26-1

6.9e-55

84.68

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAKPGQPGQAPRPVGAG
        F RR+ED  KPGQPGQAPRP G G
Subjt:  FIRRREDQAKPGQPGQAPRPVGAG

P49216 40S ribosomal protein S26

1.3e-48

76.38

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR+R+PP+R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAKPGQP-GQAPRPVGAGNP
        F RRRED+ +  +P G AP P GA  P
Subjt:  FIRRREDQAKPGQP-GQAPRPVGAGNP

Q8LPJ7 40S ribosomal protein S26-2

6.9e-55

84.68

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAKPGQPGQAPRPVGAG
        F RR+ED  KPGQPGQAPRP G G
Subjt:  FIRRREDQAKPGQPGQAPRPVGAG

Q9LYK9 40S ribosomal protein S26-3

2.6e-54

85.25

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAKPGQPGQAPRPVG
        F RR+ED  KP QPGQAPRP G
Subjt:  FIRRREDQAKPGQPGQAPRPVG

Arabidopsis top hits

e value

%identity

Alignment

AT2G40510.1 Ribosomal protein S26e family protein

4.9e-56

84.68

Show/hide

Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAKPGQPGQAPRPVGAG
        F RR+ED  KPGQPGQAPRP G G
Subjt:  FIRRREDQAKPGQPGQAPRPVGAG

AT2G40590.1 Ribosomal protein S26e family protein

4.9e-56

84.68

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAKPGQPGQAPRPVGAG
        F RR+ED  KPGQPGQAPRP G G
Subjt:  FIRRREDQAKPGQPGQAPRPVGAG

AT3G56340.1 Ribosomal protein S26e family protein

1.9e-55

85.25

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQAKPGQPGQAPRPVG
        F RR+ED  KP QPGQAPRP G
Subjt:  FIRRREDQAKPGQPGQAPRPVG

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATTCGCTGCTCCAACTGCGGGAAATGCTGCCCTAAGGACAAGGCTATTAA
GAGGTTTCTCGTGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTTCAAGAAGCCTGTGTCTATGACCAATATACTCTTCCTAAGCTTTATGCTAAGATGCAGTACT
GTGTTTCCTGTGCTATTCACTCACATGTTGTGAGAGTTCGATCTCGCACTGATAGAAGAAATAGACAACCACCACAGCGTTTCATCAGACGCAGGGAGGATCAGGCAAAG
CCCGGTCAGCCAGGTCAAGCACCTCGTCCTGTTGGAGCTGGAAATCCTACTCGTGCATAA

mRNA sequence

Show/hide mRNA sequence

TACGGATCTTCTTATCTCACGCTTAGCCTTTGCCCACACAAAACCCTAATCGGCTGCCTCTCTCTCTCTGCTTCATTTGAAGATCTCCAACTTTGTAACAATGACTTTCA
AGCGCAGGAACGGCGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATTCGCTGCTCCAACTGCGGGAAATGCTGCCCTAAGGACAAGGCTATTAAGAGGTTTCTC
GTGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTTCAAGAAGCCTGTGTCTATGACCAATATACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTG
TGCTATTCACTCACATGTTGTGAGAGTTCGATCTCGCACTGATAGAAGAAATAGACAACCACCACAGCGTTTCATCAGACGCAGGGAGGATCAGGCAAAGCCCGGTCAGC
CAGGTCAAGCACCTCGTCCTGTTGGAGCTGGAAATCCTACTCGTGCATAAAAGAAATCTTTTTATGGCTTCTACGAGTAAGTCGTAGGGTTCTTTTATAGGCGCTCTTTT
ATAGTTTGGTTGTTTCTTATGTGGATGAAAGTGAATTTTTGAATCAATATGGAAACAAACTTATCCGAGAATTTTGCAACTTGGAATGAGCTAAAGACCGTTTATTGAGT
TATCTAATGTGTTTTCTTCACTTTCTTGTTTGGGTGGGATTGGATTTTCTCCCATTTATTAACAATATGGAATTTGAATGTCTGGTCGAGAATTTATTTATGTCAGTTGG
CCAGATTGTTTGGTTTTTCCTAATACCTATATGAGGGGGAAACTAGAGAACTTAAAAATTAGATCAATGGAGGAAAAAACTCCATGACATTTAGTTTTACCCAACGGGTA
AGGTTATGGATACTATTGTTATTAATTGTTGGTCATATTCAAAGGTTCAAGATGTGTTGAATATCAG

Protein sequence

Show/hide protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAK
PGQPGQAPRPVGAGNPTRA

CSPI05G11480 (gene) of Cucumber (PI 183967) v1 genome