CuGenDBv2

Gene ID	CSPI05G11770
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	CCHC-type domain-containing protein
Genome location	Chr5:10422664..10423053
RNA-Seq Expression	CSPI05G11770
Synteny	CSPI05G11770
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008194 - UDP-glycosyltransferase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0042920.1 pol polyprotein [Cucumis melo var. makuwa]

6.0e-56

85.94

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Query:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI
        MGHQSKD  +PKN QKKH  AHIT+VDEVSD V DIDLCAVISECNMVGNSKEWW+DTGATRHICANK+MFTSYV VSNGEQLFMGNSFTSKV+ QGKVI
Subjt:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI

Query:  LKMTSGKEFTLNNVLHVPDICKNLVFGS
        LKMTS KE TLNNVLHVPDI KNLV GS
Subjt:  LKMTSGKEFTLNNVLHVPDICKNLVFGS

KAA0060612.1 pol polyprotein [Cucumis melo var. makuwa]

1.1e-54

83.59

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Query:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI
        MGHQSKDC +PKN QKKHA AHIT+VDEVSD VADIDL AVI +CNMVGN KEWW+DT ATRHICANK+MF SYV +SNGEQLFMG+SFTSKV+GQGKVI
Subjt:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI

Query:  LKMTSGKEFTLNNVLHVPDICKNLVFGS
        LKMTSGKE TLNNVLHVPDI KNLV GS
Subjt:  LKMTSGKEFTLNNVLHVPDICKNLVFGS

KAA0062659.1 pol polyprotein [Cucumis melo var. makuwa]

4.3e-54

82.03

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Query:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI
        MGHQSKDC +PK  QKKHA AHIT+VDEVSD VADIDLCAVI ECNM+ NSKEWW+DTGATRHIC NK++F SYV VSNGEQLFMGNS TSKV+GQGKVI
Subjt:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI

Query:  LKMTSGKEFTLNNVLHVPDICKNLVFGS
        LKMT GKE TLNNVLHVPDI KNL+ GS
Subjt:  LKMTSGKEFTLNNVLHVPDICKNLVFGS

KAA0066206.1 pol polyprotein [Cucumis melo var. makuwa]

2.1e-56

84.38

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Query:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI
        MGHQSKDC +PKN QKKH  AHIT+VDEVSDD+ADIDLCAVISECNMV +SKEWW+DTGATRHICANK+MFTSY+ VSNGE+LFMGNS TSKVEGQGKVI
Subjt:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI

Query:  LKMTSGKEFTLNNVLHVPDICKNLVFGS
        LKMTSGKE TLNNVLHVPDI  NL+ GS
Subjt:  LKMTSGKEFTLNNVLHVPDICKNLVFGS

TYK01391.1 pol polyprotein [Cucumis melo var. makuwa]

6.7e-55

82.03

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Query:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI
        MGHQSKDC +PKN QKKHA AHIT+VDEVSD VADID+CAV+ ECNM+GNSKEWW+DTGAT HICANK++FTSYV V+NGEQLFMGNS  SKVEGQGKVI
Subjt:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI

Query:  LKMTSGKEFTLNNVLHVPDICKNLVFGS
        LKMTS  E TLNNVLHVPDI KNL+FGS
Subjt:  LKMTSGKEFTLNNVLHVPDICKNLVFGS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7THY2 Pol polyprotein

2.9e-56

85.94

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Query:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI
        MGHQSKD  +PKN QKKH  AHIT+VDEVSD V DIDLCAVISECNMVGNSKEWW+DTGATRHICANK+MFTSYV VSNGEQLFMGNSFTSKV+ QGKVI
Subjt:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI

Query:  LKMTSGKEFTLNNVLHVPDICKNLVFGS
        LKMTS KE TLNNVLHVPDI KNLV GS
Subjt:  LKMTSGKEFTLNNVLHVPDICKNLVFGS

A0A5D3BN56 Pol polyprotein

2.1e-54

82.03

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Query:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI
        MGHQSKDC +PK  QKKHA AHIT+VDEVSD VADIDLCAVI ECNM+ NSKEWW+DTGATRHIC NK++F SYV VSNGEQLFMGNS TSKV+GQGKVI
Subjt:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI

Query:  LKMTSGKEFTLNNVLHVPDICKNLVFGS
        LKMT GKE TLNNVLHVPDI KNL+ GS
Subjt:  LKMTSGKEFTLNNVLHVPDICKNLVFGS

A0A5D3BNM4 Pol polyprotein

3.2e-55

82.03

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Query:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI
        MGHQSKDC +PKN QKKHA AHIT+VDEVSD VADID+CAV+ ECNM+GNSKEWW+DTGAT HICANK++FTSYV V+NGEQLFMGNS  SKVEGQGKVI
Subjt:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI

Query:  LKMTSGKEFTLNNVLHVPDICKNLVFGS
        LKMTS  E TLNNVLHVPDI KNL+FGS
Subjt:  LKMTSGKEFTLNNVLHVPDICKNLVFGS

A0A5D3BT19 Pol polyprotein

5.5e-55

83.59

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Query:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI
        MGHQSKDC +PKN QKKHA AHIT+VDEVSD VADIDL AVI +CNMVGN KEWW+DT ATRHICANK+MF SYV +SNGEQLFMG+SFTSKV+GQGKVI
Subjt:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI

Query:  LKMTSGKEFTLNNVLHVPDICKNLVFGS
        LKMTSGKE TLNNVLHVPDI KNLV GS
Subjt:  LKMTSGKEFTLNNVLHVPDICKNLVFGS

A0A5D3CTI3 Pol polyprotein

1.0e-56

84.38

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Query:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI
        MGHQSKDC +PKN QKKH  AHIT+VDEVSDD+ADIDLCAVISECNMV +SKEWW+DTGATRHICANK+MFTSY+ VSNGE+LFMGNS TSKVEGQGKVI
Subjt:  MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVI

Query:  LKMTSGKEFTLNNVLHVPDICKNLVFGS
        LKMTSGKE TLNNVLHVPDI  NL+ GS
Subjt:  LKMTSGKEFTLNNVLHVPDICKNLVFGS

SwissProt top hits

e value

%identity

Alignment

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

2.7e-06

32.89

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Query:  NSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVILKMTSGKEFTLNNVLHVPDICKNLV
        N+  W +D+GAT HI ++ +  + + P + G+ + + +  T  +   G   L  TS +   LN VL+VP+I KNL+
Subjt:  NSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVILKMTSGKEFTLNNVLHVPDICKNLV

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGACATCAATCGAAAGATTGTTGTAGGCCAAAAAACCTTCAGAAAAAACATGCCCATGCTCATATCACAAAAGTTGATGAAGTATCAGATGATGTTGCAGATATTGA
CCTTTGTGCAGTCATTTCAGAATGCAACATGGTGGGCAATTCCAAGGAATGGTGGATAGACACTGGGGCTACTCGTCATATTTGTGCCAACAAGGATATGTTCACATCAT
ATGTGCCAGTTTCTAATGGAGAACAACTATTTATGGGTAACTCATTTACTTCAAAGGTTGAGGGACAAGGCAAAGTGATTCTTAAGATGACCTCTGGCAAGGAATTCACT
CTCAACAATGTGCTTCATGTTCCTGACATTTGCAAGAACTTAGTTTTTGGTTCAGCTTAG

mRNA sequence

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Protein sequence

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MGHQSKDCCRPKNLQKKHAHAHITKVDEVSDDVADIDLCAVISECNMVGNSKEWWIDTGATRHICANKDMFTSYVPVSNGEQLFMGNSFTSKVEGQGKVILKMTSGKEFT
LNNVLHVPDICKNLVFGSA

CSPI05G11770 (gene) of Cucumber (PI 183967) v1 genome