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CSPI05G11860 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G11860
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase
Genome locationChr5:10519228..10519497
RNA-Seq ExpressionCSPI05G11860
SyntenyCSPI05G11860
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035073.1 uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa]5.5e-0839.08Show/hide
Query:  ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF
        A+  D         LK LGA VF GST   +A  W+  L +CF ++ CP ++++ LA  LL+ EAK WWK+I  R S+    D   F
Subjt:  ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF

KAA0037768.1 reverse transcriptase [Cucumis melo var. makuwa]4.2e-0843.24Show/hide
Query:  ELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF
        +LK LGA VF GST   +A  W+  L +CF +I CP ++++ LA  LL+ EA+ WWK+I  R S+    D   F
Subjt:  ELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF

KAA0042086.1 reverse transcriptase [Cucumis melo var. makuwa]4.2e-0837.93Show/hide
Query:  ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF
        A+  D        +LK LGA VF GST   +A  W+  L +CF ++ CP ++++ LA  LL+ EA+ WWK+I  R S+    D   F
Subjt:  ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF

KAA0062255.1 putative Retrotransposon protein [Cucumis melo var. makuwa]3.2e-0839.08Show/hide
Query:  ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF
        A+  D         LK LGA VF GST S +A  W+  L +CF ++ CP ++++ LA  LL+ EA+ WWK+I  R S+    D   F
Subjt:  ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF

TYK18029.1 reverse transcriptase [Cucumis melo var. makuwa]4.2e-0837.93Show/hide
Query:  ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF
        A+  D        +LK LGA VF GST   +A  W+  L +CF ++ CP ++++ LA  LL+ EA+ WWK+I  R S+    D   F
Subjt:  ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF

TrEMBL top hitse value%identityAlignment
A0A5A7T4N0 Reverse transcriptase2.0e-0843.24Show/hide
Query:  ELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF
        +LK LGA VF GST   +A  W+  L +CF +I CP ++++ LA  LL+ EA+ WWK+I  R S+    D   F
Subjt:  ELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF

A0A5A7TJC9 Reverse transcriptase2.0e-0837.93Show/hide
Query:  ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF
        A+  D        +LK LGA VF GST   +A  W+  L +CF ++ CP ++++ LA  LL+ EA+ WWK+I  R S+    D   F
Subjt:  ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF

A0A5A7V8M7 Putative Retrotransposon protein1.6e-0839.08Show/hide
Query:  ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF
        A+  D         LK LGA VF GST S +A  W+  L +CF ++ CP ++++ LA  LL+ EA+ WWK+I  R S+    D   F
Subjt:  ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF

A0A5D3CVV8 Retrotrans_gag domain-containing protein2.7e-0839.08Show/hide
Query:  ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF
        A+  D         LK LGA VF GST   +A  W+  L +CF +I CP ++++ LA  LL+ EA+ WWK+I  R S+    D   F
Subjt:  ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF

A0A5D3D3U4 Reverse transcriptase2.0e-0837.93Show/hide
Query:  ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF
        A+  D        +LK LGA VF GST   +A  W+  L +CF ++ CP ++++ LA  LL+ EA+ WWK+I  R S+    D   F
Subjt:  ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACTCGCAGACTTTATGGATTCAAGAAATATGCTTCCAACACGAGAATTAAAAGTTTTAGGAGCTAAGGTGTTTAGAGGATCAACTGTTTCAAATGAAGCAAATGA
ATGGGTCGGTGGATTGATGGAATGCTTCACGATTATTAAGTGCCCTGCCGATCAACAGATGGAACTAGCAGAAACTTTGTTAGAAGGAGAAGCAAAGGAATGGTGGAAAA
CAATTAAGAAAAGATTGTCTAATGAAGAGAGACAAGACTTGGATCTGTTT
mRNA sequenceShow/hide mRNA sequence
ATGTCACTCGCAGACTTTATGGATTCAAGAAATATGCTTCCAACACGAGAATTAAAAGTTTTAGGAGCTAAGGTGTTTAGAGGATCAACTGTTTCAAATGAAGCAAATGA
ATGGGTCGGTGGATTGATGGAATGCTTCACGATTATTAAGTGCCCTGCCGATCAACAGATGGAACTAGCAGAAACTTTGTTAGAAGGAGAAGCAAAGGAATGGTGGAAAA
CAATTAAGAAAAGATTGTCTAATGAAGAGAGACAAGACTTGGATCTGTTT
Protein sequenceShow/hide protein sequence
MSLADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF