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CSPI05G12080 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G12080
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionSm domain-containing protein
Genome locationChr5:10809585..10814367
RNA-Seq ExpressionCSPI05G12080
SyntenyCSPI05G12080
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0030490 - maturation of SSU-rRNA (biological process)
GO:0000932 - P-body (cellular component)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005688 - U6 snRNP (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0005732 - small nucleolar ribonucleoprotein complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR016487 - Sm-like protein Lsm6/SmF


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599859.1 Sm-like protein LSM36B, partial [Cucurbita argyrosperma subsp. sororia]4.2e-4398.91Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS

KAG6600796.1 Eukaryotic translation initiation factor 2 subunit 3, Y-linked, partial [Cucurbita argyrosperma subsp. sororia]3.2e-4398.91Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        MSIGGEKGS STKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS

XP_004140401.1 sm-like protein LSM36B [Cucumis sativus]1.1e-43100Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS

XP_022942809.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita moschata]3.2e-4398.91Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        MSIGGEKGS STKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS

XP_023539899.1 uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo]4.2e-4398.91Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS

TrEMBL top hitse value%identityAlignment
A0A0A0KSS9 Sm domain-containing protein5.3e-44100Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS

A0A1S3CBJ6 sm-like protein LSM36B5.3e-44100Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS

A0A6J1DNH0 sm-like protein LSM36B5.3e-44100Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS

A0A6J1FPX7 U6 snRNA-associated Sm-like protein LSm61.5e-4398.91Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        MSIGGEKGS STKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS

A0A6J1JLP5 uncharacterized protein LOC1114855522.0e-4398.91Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS

SwissProt top hitse value%identityAlignment
A8NHT8 U6 snRNA-associated Sm-like protein LSm62.4e-2573.97Show/hide
Query:  TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSK
        T +P DFLK + G+ VVV+L SGVDYRGIL+CLDGYMNIAMEQTEE VNG++ N+YGDAFIRGNNVLYIS  +
Subjt:  TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSK

O22823 Sm-like protein LSM36B6.5e-3984.62Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS
        MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVNGQLKN YGDAF+RGNNVLYIST+K TL++G+
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS

P62312 U6 snRNA-associated Sm-like protein LSm62.4e-3384.81Show/hide
Query:  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL
        S   +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFIRGNNVLYIST KR +
Subjt:  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL

P62313 U6 snRNA-associated Sm-like protein LSm62.4e-3384.81Show/hide
Query:  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL
        S   +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFIRGNNVLYIST KR +
Subjt:  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL

Q9M1Z3 Sm-like protein LSM6A2.1e-3787.21Show/hide
Query:  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS
        EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST   T+A+G+
Subjt:  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS

Arabidopsis top hitse value%identityAlignment
AT2G43810.1 Small nuclear ribonucleoprotein family protein4.6e-4084.62Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS
        MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVNGQLKN YGDAF+RGNNVLYIST+K TL++G+
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS

AT2G43810.2 Small nuclear ribonucleoprotein family protein4.6e-4084.62Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS
        MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVNGQLKN YGDAF+RGNNVLYIST+K TL++G+
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS

AT3G59810.1 Small nuclear ribonucleoprotein family protein1.5e-3887.21Show/hide
Query:  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS
        EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST   T+A+G+
Subjt:  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS

AT4G30220.1 small nuclear ribonucleoprotein F1.5e-1448.48Show/hide
Query:  PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI
        P  FL ++ G+ V+VKL  G++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR NNVLY+
Subjt:  PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI

AT4G30220.2 small nuclear ribonucleoprotein F1.5e-1448.48Show/hide
Query:  PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI
        P  FL ++ G+ V+VKL  G++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR NNVLY+
Subjt:  PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCGGACTTTCTCAAGTCAATTCGGGGTCGTCCCGTAGTTGTGAAACTCAACTCTGGTGTTGACTA
CAGAGGTATTCTTGCCTGTCTCGATGGATACATGAATATAGCAATGGAGCAAACCGAAGAATACGTAAATGGACAGTTGAAGAACAAATATGGCGATGCTTTCATTCGTG
GAAATAACGTTCTGTACATCAGTACATCAAAGAGGACATTAGCAGAAGGGTCATCTTAG
mRNA sequenceShow/hide mRNA sequence
TGGATCTAAAATTATGGATTGAATTGAAAAATGTCTTCCGACTCAACCAATCCATGATTTTTGTTAATAGAGAGAGCAAATAAGTTTTTGCCCTAACAATCGTCTTCTGC
TTCATCTTCTTCTCTCTCACCGTACTCTACCTTTGAGTTTCTCCGACTATCCCTTCTTCTCTCACACTCTCTCTGCTTCATCCTCTCTCATCCACTTTCGCATTTCTTAC
AGTAACAGCGACACCAGATCTTAAGTTTTCTCGTCTTCACTCCACGGTATAAAAAGTTGGTTGTGCAAATAGAAGAAAACTAGAGATGAGTATTGGTGGTGAAAAAGGTT
CTGCATCAACAAAGACACCAGCGGACTTTCTCAAGTCAATTCGGGGTCGTCCCGTAGTTGTGAAACTCAACTCTGGTGTTGACTACAGAGGTATTCTTGCCTGTCTCGAT
GGATACATGAATATAGCAATGGAGCAAACCGAAGAATACGTAAATGGACAGTTGAAGAACAAATATGGCGATGCTTTCATTCGTGGAAATAACGTTCTGTACATCAGTAC
ATCAAAGAGGACATTAGCAGAAGGGTCATCTTAGCGACGCTAAGAATTCTGACAGGAAATGAGAGATGGGTCGGAATTGGAAATTGATCATGAAATTGTGTTGTGTACAA
TGAAGTAGTGGTTGTGAACAACTTCGACCAAAACTCTTGTTTGGTAGGAAAGAAATGAAATGCAAACTATGAGACCTTTGGACCTTTCTTTTATTGGAATTACTATTTTG
ATCTGCCTGAGACCCAATTAACAAATCCCTCCTTTTTAAAATGCTCATGTATGGCTCTTGATCATTTAAAATTCCTGTTTTTTCCTGTTCGAGCTAAAGATTCTGAAAAT
TTACCTTTCAGAATAACTATAAATTATAAATCTGTAATTGGC
Protein sequenceShow/hide protein sequence
MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS