; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G12460 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G12460
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr5:11672505..11674054
RNA-Seq ExpressionCSPI05G12460
SyntenyCSPI05G12460
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR036397 - Ribonuclease H superfamily
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAV88069.1 hypothetical retrotransposon [Ipomoea batatas]1.5e-18161.11Show/hide
Query:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE
        FHA VER+TG+KLKC+RTDNGGEYCGPFDEY R + IRHQKTPPK PQLNG+AE++N+T++ERVRC+L ++ LP SFW EA++T VHV+NL+P + L +E
Subjt:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE

Query:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL
        VP++ W GKD+SY HLRVFGCKAFVHVP+DE SK D+KT+ C+F+GYG DEFGYRLYDP +KKL+RSRDVVF E+QTI DI+K+ +PES+ S +L+D+  
Subjt:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL

Query:  TS--LTQPSTQIEDEVGTKDSV-------------------QEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPESYE-------------
         S   T    ++++ V   D V                   QEQ   + VP+D+  RRS R+RRPSTRYS  +Y+LLTD GEPESYE             
Subjt:  TS--LTQPSTQIEDEVGTKDSV-------------------QEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPESYE-------------

Query:  ---------------ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTAFL
                       ELVK PK + AL N+WVYR+KHEE TS PR+KARLV+KGF+QKK IDFDE F+PVVK S I VV+GLAA L++E+ QM VKTAFL
Subjt:  ---------------ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTAFL

Query:  HRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIYNLKKQ
        H DLD+EIYMEQ EGF+ KGKE  V +LKK+LYGLKQAPRQWYKKF SVM + GY+KT+SDHCVFV ++SDDDFVILLLYVDD+LIVG+N SRI  LK++
Subjt:  HRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIYNLKKQ

Query:  LSKSFAMKDLGPAKKVLGIQIV
        LSKSF+MKD+GPAK++LG++I+
Subjt:  LSKSFAMKDLGPAKKVLGIQIV

QHO56209.1 Retrovirus-related Pol polyprotein [Arachis hypogaea]8.0e-18363.48Show/hide
Query:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE
        F A VERETG+KLKC+RTDNGGEY GPFD Y + H IRHQKTPPKTPQLNG+AE++N+TLVERVRCLL +S L KSFWGEAL+TVVHVLN TPCVPL  E
Subjt:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE

Query:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL
        VP + WSG D+SY HLRVFGCKAFVH+PKDE SK D KT+ C+F+GYG DEFGYR YDP  KK+IRSRDVVFVEDQT+ D++  ++P  + SD+  DL +
Subjt:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL

Query:  TSLTQPSTQ-----------------------IEDEVGTKDSVQEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPESYE-----------
        T  + P  +                       I DEVG  D  +E   E  +P + +LRRS R+R+PS+RYS  E++LLTD GEPE +E           
Subjt:  TSLTQPSTQ-----------------------IEDEVGTKDSVQEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPESYE-----------

Query:  -----------------ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTA
                         ELVKLPKG   L NKWV+RIK+EEH S PRYKARLV++GF+Q+K +D++E F+PVV+MS I  V+GLAASL+LE+ QM VKTA
Subjt:  -----------------ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTA

Query:  FLHRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIYNLK
        FLH DLDKEIYMEQ EGF  KGKE  V KLKK+LYGLKQAPRQWYKKFESVMG+ GYRKTTSDHCVFVQKFSDDDF+ILLLYVDDILIVGKN  RI  LK
Subjt:  FLHRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIYNLK

Query:  KQLSKSFAMKDLGPAKKVLGIQI
        KQLS+ FAMKDLGPAK++LG+ I
Subjt:  KQLSKSFAMKDLGPAKKVLGIQI

RVW24680.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]9.8e-18967.39Show/hide
Query:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE
        FHA VER++GEKLKC+RTDNGGEY GPFDEY R H IRHQKTPPKTPQLNG+AE++N+TLVERVRCLL +S LP+ FWGEALNTVVHVLNLTPCVPL  +
Subjt:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE

Query:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL
        VP+R WS  +ISY HLRVFGCKAFVH+PKDE SK DAKT+ CVF+GYGQDE GYR YDP +KKL+RSRDVVF+ED TI DIEK +  ES+HS +LIDL  
Subjt:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL

Query:  TSLTQPSTQIEDE------------------------------------VGTKDSVQEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPES
          LT   TQ+EDE                                    V   D V EQ      P D+ LR  V       +    + +        E+
Subjt:  TSLTQPSTQIEDE------------------------------------VGTKDSVQEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPES

Query:  YE-ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTAFLHRDLDKEIYMEQ
        +  ELVKLPKGK AL N+WVYR+K EEHTS+PRYKARLV+KGFNQKK IDFDE F+PVVKMS I VV+GLAASL+LE+ QM VKTAFLH DLDKEIYMEQ
Subjt:  YE-ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTAFLHRDLDKEIYMEQ

Query:  QEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIYNLKKQLSKSFAMKDLGP
         EGF  KGKE  V KLKK+LYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVG+NVSRI +LKKQLSKSFAMKDLGP
Subjt:  QEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIYNLKKQLSKSFAMKDLGP

Query:  AKKVLGIQI
         K++LGI+I
Subjt:  AKKVLGIQI

RVW85908.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]5.9e-20268.1Show/hide
Query:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE
        FHA VER++GEKLKC+RTDNGGEY GPFDEY R H IRHQKTPPKTPQLNG+AE++N+TLVERVRCLL +S LP+SFWGEALNTVVHVLNLTPCVPL  +
Subjt:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE

Query:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL
        VP+R WS  +ISY HLRVFGCKAFVH+PKDE SK DAKT+ CVF+GYGQDE GYR YDP +KKL+RSRDVVF+ED TI DIEK +  ES+HS +LIDL  
Subjt:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL

Query:  TSLTQPSTQIEDE------------------------------------VGTKDSVQEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPES
          L    TQ+EDE                                    V   D V EQ      P D+ LRRS RDR PSTRYS+D+Y+LLTD GEPES
Subjt:  TSLTQPSTQIEDE------------------------------------VGTKDSVQEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPES

Query:  YE----------------------------ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAAS
        Y                             ELVKLPKGK AL N+WVYR+K EEHTS+PRYKARLV+KGFNQKK IDFDE F+PVVKMS I VV+GLAAS
Subjt:  YE----------------------------ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAAS

Query:  LNLEVGQMGVKTAFLHRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDIL
        L+LE+ QM VKTAFLH DLDKEIYMEQ EGF  KGKE  V KLKK+LYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDIL
Subjt:  LNLEVGQMGVKTAFLHRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDIL

Query:  IVGKNVSRIYNLKKQLSKSFAMKDLGPAKKVLGIQI
        IVG+NVSRI NLKKQLSKSFAMKDLGP K++LGI+I
Subjt:  IVGKNVSRIYNLKKQLSKSFAMKDLGPAKKVLGIQI

RVW88205.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.4e-19867.54Show/hide
Query:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE
        FHA VER++GEKLKC+RTDNGGEY GPFDEY R H IRHQKTPPKTPQLNG+AE++N+TLVERVRCLL +S LP+SFWGEALNTVVHVLNLTPCVPL  +
Subjt:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE

Query:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL
        V +R WS  +ISY HLRVFGCKAFVH+PKDE SK DAKT+ CVF+GYGQDE GYR YDP +KKL+RSRDVVF+ED TI DIEK +  ES+HS +LIDL  
Subjt:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL

Query:  TSLTQPSTQIEDE------------------------------------VGTKDSVQEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPES
          L    TQ+EDE                                    V   D V EQ     VP D+ LRRS RDR PST YS+D+Y+LLTD GE ES
Subjt:  TSLTQPSTQIEDE------------------------------------VGTKDSVQEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPES

Query:  YE----------------------------ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAAS
        Y                             ELVKLPKGK AL N+WVYR+K EEHTS+PRYKARLV+KGFNQKK IDFDE F+PVVKMS I VV+GLAAS
Subjt:  YE----------------------------ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAAS

Query:  LNLEVGQMGVKTAFLHRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDIL
        L+LE+ QM VKTAFLH DLDKEIYMEQ EGF  KGKE  V KLKK+LYGLKQAPRQWYKKFESVMGEQGYRKTT DHCVFVQKFSDDDFVILLLYVDDIL
Subjt:  LNLEVGQMGVKTAFLHRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDIL

Query:  IVGKNVSRIYNLKKQLSKSFAMKDLGPAKKVLGIQI
        IVG+NVSRI NLKKQLSKSFAMKDLGP K++LGI+I
Subjt:  IVGKNVSRIYNLKKQLSKSFAMKDLGPAKKVLGIQI

TrEMBL top hitse value%identityAlignment
A0A438CN91 Retrovirus-related Pol polyprotein from transposon TNT 1-944.7e-18967.39Show/hide
Query:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE
        FHA VER++GEKLKC+RTDNGGEY GPFDEY R H IRHQKTPPKTPQLNG+AE++N+TLVERVRCLL +S LP+ FWGEALNTVVHVLNLTPCVPL  +
Subjt:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE

Query:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL
        VP+R WS  +ISY HLRVFGCKAFVH+PKDE SK DAKT+ CVF+GYGQDE GYR YDP +KKL+RSRDVVF+ED TI DIEK +  ES+HS +LIDL  
Subjt:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL

Query:  TSLTQPSTQIEDE------------------------------------VGTKDSVQEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPES
          LT   TQ+EDE                                    V   D V EQ      P D+ LR  V       +    + +        E+
Subjt:  TSLTQPSTQIEDE------------------------------------VGTKDSVQEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPES

Query:  YE-ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTAFLHRDLDKEIYMEQ
        +  ELVKLPKGK AL N+WVYR+K EEHTS+PRYKARLV+KGFNQKK IDFDE F+PVVKMS I VV+GLAASL+LE+ QM VKTAFLH DLDKEIYMEQ
Subjt:  YE-ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTAFLHRDLDKEIYMEQ

Query:  QEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIYNLKKQLSKSFAMKDLGP
         EGF  KGKE  V KLKK+LYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVG+NVSRI +LKKQLSKSFAMKDLGP
Subjt:  QEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIYNLKKQLSKSFAMKDLGP

Query:  AKKVLGIQI
         K++LGI+I
Subjt:  AKKVLGIQI

A0A438GP95 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-18162.5Show/hide
Query:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE
        FHA VER++GEKLKC+RTDNGGEY GPFDEY R H  RHQKTPPKTPQLNG+AE++N+TLVERVRCLL +S LP+SFWGEALNT+VHVLNLTPCVPL  +
Subjt:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE

Query:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL
        VP+R WS  +ISY HLRVFGCKAFVH+PKDE SK DAKT+ CVF+GYGQDE GY+ YD  +KKL+RSRDVVF+ED TI DIEK +  ES+HS +LIDL  
Subjt:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL

Query:  TSLTQPSTQIED------------------------------------EVGTKDSVQEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPES
          LT   TQ+ED                                    +V   D V EQ      P D+ LRRS RDR PSTRYS+D+Y+LLTD GEPES
Subjt:  TSLTQPSTQIED------------------------------------EVGTKDSVQEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPES

Query:  YE----------------------------ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAAS
        Y                             ELVKLPKGK AL N+WVYR+K EEHTS+PRYKARLV+K    K+                         S
Subjt:  YE----------------------------ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAAS

Query:  LNLEVGQMGVKTAFLHRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDIL
         +LE+ QM VKTAFLH DLDKEIYMEQ EGF  KGKE  V KLKK+LYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDIL
Subjt:  LNLEVGQMGVKTAFLHRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDIL

Query:  IVGKNVSRIYNLKKQLSKSFAMKDLGPAKKVLGIQI
        IV +NVSRI NLKKQLSKSFAMKDLGP K++LGI+I
Subjt:  IVGKNVSRIYNLKKQLSKSFAMKDLGPAKKVLGIQI

A0A438HN89 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-20268.1Show/hide
Query:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE
        FHA VER++GEKLKC+RTDNGGEY GPFDEY R H IRHQKTPPKTPQLNG+AE++N+TLVERVRCLL +S LP+SFWGEALNTVVHVLNLTPCVPL  +
Subjt:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE

Query:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL
        VP+R WS  +ISY HLRVFGCKAFVH+PKDE SK DAKT+ CVF+GYGQDE GYR YDP +KKL+RSRDVVF+ED TI DIEK +  ES+HS +LIDL  
Subjt:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL

Query:  TSLTQPSTQIEDE------------------------------------VGTKDSVQEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPES
          L    TQ+EDE                                    V   D V EQ      P D+ LRRS RDR PSTRYS+D+Y+LLTD GEPES
Subjt:  TSLTQPSTQIEDE------------------------------------VGTKDSVQEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPES

Query:  YE----------------------------ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAAS
        Y                             ELVKLPKGK AL N+WVYR+K EEHTS+PRYKARLV+KGFNQKK IDFDE F+PVVKMS I VV+GLAAS
Subjt:  YE----------------------------ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAAS

Query:  LNLEVGQMGVKTAFLHRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDIL
        L+LE+ QM VKTAFLH DLDKEIYMEQ EGF  KGKE  V KLKK+LYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDIL
Subjt:  LNLEVGQMGVKTAFLHRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDIL

Query:  IVGKNVSRIYNLKKQLSKSFAMKDLGPAKKVLGIQI
        IVG+NVSRI NLKKQLSKSFAMKDLGP K++LGI+I
Subjt:  IVGKNVSRIYNLKKQLSKSFAMKDLGPAKKVLGIQI

A0A438HUT4 Retrovirus-related Pol polyprotein from transposon TNT 1-946.6e-19967.54Show/hide
Query:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE
        FHA VER++GEKLKC+RTDNGGEY GPFDEY R H IRHQKTPPKTPQLNG+AE++N+TLVERVRCLL +S LP+SFWGEALNTVVHVLNLTPCVPL  +
Subjt:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE

Query:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL
        V +R WS  +ISY HLRVFGCKAFVH+PKDE SK DAKT+ CVF+GYGQDE GYR YDP +KKL+RSRDVVF+ED TI DIEK +  ES+HS +LIDL  
Subjt:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL

Query:  TSLTQPSTQIEDE------------------------------------VGTKDSVQEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPES
          L    TQ+EDE                                    V   D V EQ     VP D+ LRRS RDR PST YS+D+Y+LLTD GE ES
Subjt:  TSLTQPSTQIEDE------------------------------------VGTKDSVQEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPES

Query:  YE----------------------------ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAAS
        Y                             ELVKLPKGK AL N+WVYR+K EEHTS+PRYKARLV+KGFNQKK IDFDE F+PVVKMS I VV+GLAAS
Subjt:  YE----------------------------ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAAS

Query:  LNLEVGQMGVKTAFLHRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDIL
        L+LE+ QM VKTAFLH DLDKEIYMEQ EGF  KGKE  V KLKK+LYGLKQAPRQWYKKFESVMGEQGYRKTT DHCVFVQKFSDDDFVILLLYVDDIL
Subjt:  LNLEVGQMGVKTAFLHRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDIL

Query:  IVGKNVSRIYNLKKQLSKSFAMKDLGPAKKVLGIQI
        IVG+NVSRI NLKKQLSKSFAMKDLGP K++LGI+I
Subjt:  IVGKNVSRIYNLKKQLSKSFAMKDLGPAKKVLGIQI

Q5MG99 Hypothetical retrotransposon7.3e-18261.11Show/hide
Query:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE
        FHA VER+TG+KLKC+RTDNGGEYCGPFDEY R + IRHQKTPPK PQLNG+AE++N+T++ERVRC+L ++ LP SFW EA++T VHV+NL+P + L +E
Subjt:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE

Query:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL
        VP++ W GKD+SY HLRVFGCKAFVHVP+DE SK D+KT+ C+F+GYG DEFGYRLYDP +KKL+RSRDVVF E+QTI DI+K+ +PES+ S +L+D+  
Subjt:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSL

Query:  TS--LTQPSTQIEDEVGTKDSV-------------------QEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPESYE-------------
         S   T    ++++ V   D V                   QEQ   + VP+D+  RRS R+RRPSTRYS  +Y+LLTD GEPESYE             
Subjt:  TS--LTQPSTQIEDEVGTKDSV-------------------QEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPESYE-------------

Query:  ---------------ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTAFL
                       ELVK PK + AL N+WVYR+KHEE TS PR+KARLV+KGF+QKK IDFDE F+PVVK S I VV+GLAA L++E+ QM VKTAFL
Subjt:  ---------------ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTAFL

Query:  HRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIYNLKKQ
        H DLD+EIYMEQ EGF+ KGKE  V +LKK+LYGLKQAPRQWYKKF SVM + GY+KT+SDHCVFV ++SDDDFVILLLYVDD+LIVG+N SRI  LK++
Subjt:  HRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIYNLKKQ

Query:  LSKSFAMKDLGPAKKVLGIQIV
        LSKSF+MKD+GPAK++LG++I+
Subjt:  LSKSFAMKDLGPAKKVLGIQIV

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.3e-5528.74Show/hide
Query:  FHAFVERETGEKLKCVRTDNGGEY-CGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPL--
        F A  E     K+  +  DNG EY      ++     I +  T P TPQLNG++E++ +T+ E+ R ++  + L KSFWGEA+ T  +++N  P   L  
Subjt:  FHAFVERETGEKLKCVRTDNGGEY-CGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPL--

Query:  GSEVPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTI-------------------
         S+ P   W  K     HLRVFG   +VH+ K++  K D K+   +F+GY  +  G++L+D   +K I +RDVV  E   +                   
Subjt:  GSEVPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTI-------------------

Query:  -----ADIEKIDEP----ESKHSDNLIDLS------------------LTSLTQPSTQIEDEVGTKDSVQ------------------------------
              D  KI +     ESK  DN+  L                    T     S + ++    KDS +                              
Subjt:  -----ADIEKIDEP----ESKHSDNLIDLS------------------LTSLTQPSTQIEDEVGTKDSVQ------------------------------

Query:  ------EQLAETVVP-------IDVSLRRSVR-DRRPSTRYS----------LDEYLLLTD----------RGEPESYEE----------------LVKL
              E L E  +        I++  RRS R   +P   Y+          L+ + +  D          R +  S+EE                + K 
Subjt:  ------EQLAETVVP-------IDVSLRRSVR-DRRPSTRYS----------LDEYLLLTD----------RGEPESYEE----------------LVKL

Query:  PKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTAFLHRDLDKEIYMEQQEGFEQKG
        P+ K  ++++WV+ +K+ E  +  RYKARLV +GF QK  ID++E F PV ++S    ++ L    NL+V QM VKTAFL+  L +EIYM   +G     
Subjt:  PKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTAFLHRDLDKEIYMEQQEGFEQKG

Query:  KEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFV-QKFSDDDFVILLLYVDDILIVGKNVSRIYNLKKQLSKSFAMKDLGPAKKVLGI
            V KL K +YGLKQA R W++ FE  + E  +  ++ D C+++  K + ++ + +LLYVDD++I   +++R+ N K+ L + F M DL   K  +GI
Subjt:  KEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFV-QKFSDDDFVILLLYVDDILIVGKNVSRIYNLKKQLSKSFAMKDLGPAKKVLGI

Query:  QI
        +I
Subjt:  QI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-14051.64Show/hide
Query:  FHAFVERETGEKLKCVRTDNGGEYCG-PFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGS
        FHA VERETG KLK +R+DNGGEY    F+EY  +H IRH+KT P TPQ NG+AE++N+T+VE+VR +L  + LPKSFWGEA+ T  +++N +P VPL  
Subjt:  FHAFVERETGEKLKCVRTDNGGEYCG-PFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGS

Query:  EVPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLS
        E+P R W+ K++SYSHL+VFGC+AF HVPK++ +K D K+  C+F+GYG +EFGYRL+DP KKK+IRSRDVVF E +     +  ++ ++    N + + 
Subjt:  EVPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLS

Query:  LTSLTQPSTQ-IEDEV-------GTKDSVQEQLAETVVPID---------VSLRRSVRDRRPSTRYSLDEYLLLTDRGEPESYEE---------------
         TS    S +   DEV       G      EQL E V  ++           LRRS R R  S RY   EY+L++D  EPES +E               
Subjt:  LTSLTQPSTQ-IEDEV-------GTKDSVQEQLAETVVPID---------VSLRRSVRDRRPSTRYSLDEYLLLTDRGEPESYEE---------------

Query:  -------------LVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTAFLHRD
                     LV+LPKGK  L  KWV+++K +      RYKARLV+KGF QKK IDFDE F+PVVKM+ I  ++ LAASL+LEV Q+ VKTAFLH D
Subjt:  -------------LVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTAFLHRD

Query:  LDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIYNLKKQLSK
        L++EIYMEQ EGFE  GK+H+V KL K+LYGLKQAPRQWY KF+S M  Q Y KT SD CV+ ++FS+++F+ILLLYVDD+LIVGK+   I  LK  LSK
Subjt:  LDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIYNLKKQLSK

Query:  SFAMKDLGPAKKVLGIQIV
        SF MKDLGPA+++LG++IV
Subjt:  SFAMKDLGPAKKVLGIQIV

P92512 Uncharacterized mitochondrial protein AtMg007105.3e-1242.25Show/hide
Query:  LNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSEVPNRKWSGKDISYSHLRVFGCKAFVH
        +N+T++E+VR +L E  LPK+F  +A NT VH++N  P   +   VP+  W     +YS+LR FGC A++H
Subjt:  LNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSEVPNRKWSGKDISYSHLRVFGCKAFVH

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE17.9e-4825.6Show/hide
Query:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE
        F   +E     ++    +DNGGE+   + EY+  H I H  +PP TP+ NG++E+ ++ +VE    LL  + +PK++W  A    V+++N  P   L  E
Subjt:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE

Query:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVED-----QTIADIEKIDEP--------
         P +K  G   +Y  LRVFGC  +  +      K D K++ CVFLGY   +  Y        +L  SR V F E+       +A +  + E         
Subjt:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVED-----QTIADIEKIDEP--------

Query:  ------------------------------------ESKHSDNLIDLSLTS------------------LTQP--------STQIEDEVGTKDSVQEQLA
                                             S+ S + +D S +S                   TQP        S+Q   +    +    QLA
Subjt:  ------------------------------------ESKHSDNLIDLSLTS------------------LTQP--------STQIEDEVGTKDSVQEQLA

Query:  ETV----------------------------------------------VPID---VSLRRSVRDRRPSTRYSLDEYLLLTDRGEPESYEELVKLPKGKT
        +++                                               P++   +  R      +P+ +YSL   + L    EP +  + +K  + + 
Subjt:  ETV----------------------------------------------VPID---VSLRRSVRDRRPSTRYSLDEYLLLTDRGEPESYEELVKLPKGKT

Query:  ALNN--------------------------KWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTAF
        A+ +                          +W++  K+    S  RYKARLV KG+NQ+  +D+ E F+PV+K + I +V+G+A   +  + Q+ V  AF
Subjt:  ALNN--------------------------KWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTAF

Query:  LHRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIYNLKK
        L   L  ++YM Q  GF  K + + V KL+K LYGLKQAPR WY +  + +   G+  + SD  +FV +      V +L+YVDDILI G + + ++N   
Subjt:  LHRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIYNLKK

Query:  QLSKSFAMKDLGPAKKVLGIQ
         LS+ F++KD       LGI+
Subjt:  QLSKSFAMKDLGPAKKVLGIQ

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.9e-4223.68Show/hide
Query:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE
        F + VE     ++  + +DNGGE+     +Y   H I H  +PP TP+ NG++E+ ++ +VE    LL  + +PK++W  A +  V+++N  P   L  +
Subjt:  FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSE

Query:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVE--------------------------
         P +K  G+  +Y  L+VFGC  +  +      K + K+K C F+GY   +  Y        +L  SR V F E                          
Subjt:  VPNRKWSGKDISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVE--------------------------

Query:  ------------------------------------------------------------------DQTIADIEKIDE----------------------
                                                                           Q  A   +                         
Subjt:  ------------------------------------------------------------------DQTIADIEKIDE----------------------

Query:  -----PESKHSDNLIDLSLTSLTQPSTQIEDEVGTKDSVQEQLAETVVPIDV-------SLRRSVRD--RRPSTRYSLDEYLLLTDRGEPESYEELVK--
             P+S  S   I    TS+++P++       T        A  ++ ++        S+    +D  R+P+ +YS      L    EP +  + +K  
Subjt:  -----PESKHSDNLIDLSLTSLTQPSTQIEDEVGTKDSVQEQLAETVVPIDV-------SLRRSVRD--RRPSTRYSLDEYLLLTDRGEPESYEELVK--

Query:  ------------------------LPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGV
                                 P   T +  +W++  K     S  RYKARLV KG+NQ+  +D+ E F+PV+K + I +V+G+A   +  + Q+ V
Subjt:  ------------------------LPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGV

Query:  KTAFLHRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIY
          AFL   L  E+YM Q  GF  K +   V +L+K +YGLKQAPR WY +  + +   G+  + SD  +FV +      + +L+YVDDILI G +   + 
Subjt:  KTAFLHRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIY

Query:  NLKKQLSKSFAMKDLGPAKKVLGIQ
        +    LS+ F++K+       LGI+
Subjt:  NLKKQLSKSFAMKDLGPAKKVLGIQ

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 83.1e-3940.95Show/hide
Query:  ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTAFLHRDLDKEIYMEQQEG
        E+  LP  K  +  KWVY+IK+    +  RYKARLV KG+ Q++ IDF E F+PV K++ + +++ ++A  N  + Q+ +  AFL+ DLD+EIYM+   G
Subjt:  ELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVVMGLAASLNLEVGQMGVKTAFLHRDLDKEIYMEQQEG

Query:  FEQKGKEHL----VSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIYNLKKQLSKSFAMKDLG
        +  +  + L    V  LKK++YGLKQA RQW+ KF   +   G+ ++ SDH  F+ K +   F+ +L+YVDDI+I   N + +  LK QL   F ++DLG
Subjt:  FEQKGKEHL----VSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGKNVSRIYNLKKQLSKSFAMKDLG

Query:  PAKKVLGIQI
        P K  LG++I
Subjt:  PAKKVLGIQI

ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.8e-1342.25Show/hide
Query:  LNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSEVPNRKWSGKDISYSHLRVFGCKAFVH
        +N+T++E+VR +L E  LPK+F  +A NT VH++N  P   +   VP+  W     +YS+LR FGC A++H
Subjt:  LNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSEVPNRKWSGKDISYSHLRVFGCKAFVH

ATMG00810.1 DNA/RNA polymerases superfamily protein1.0e-0557.78Show/hide
Query:  LLLYVDDILIVGKNVSRIYNLKKQLSKSFAMKDLGPAKKVLGIQI
        LLLYVDDIL+ G + + +  L  QLS +F+MKDLGP    LGIQI
Subjt:  LLLYVDDILIVGKNVSRIYNLKKQLSKSFAMKDLGPAKKVLGIQI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTCATGCCTTTGTTGAGAGAGAAACTGGTGAAAAGCTCAAGTGTGTTAGAACTGATAATGGAGGTGAGTATTGTGGACCTTTTGATGAATATTATAGAAATCATGACAT
TCGACATCAAAAGACACCTCCTAAGACCCCGCAGTTAAATGGGATAGCTGAAAAATTGAACAAAACATTGGTTGAGAGAGTGAGATGCTTATTATTTGAATCACATTTGC
CAAAGTCATTTTGGGGCGAAGCTTTAAATACAGTTGTACATGTTTTGAATCTCACACCATGTGTTCCATTGGGATCAGAAGTTCCAAACAGAAAATGGTCAGGTAAGGAT
ATATCTTACAGTCACCTACGTGTCTTTGGTTGTAAAGCTTTTGTTCATGTACCTAAAGATGAAAGTTCAAAGAATGATGCAAAAACCAAAGCATGTGTGTTTCTTGGTTA
TGGCCAAGATGAGTTTGGTTATAGATTATATGATCCAACTAAGAAAAAGCTTATAAGAAGTCGAGATGTTGTATTTGTTGAAGACCAAACAATAGCAGACATTGAGAAAA
TAGATGAACCAGAGTCTAAGCATAGTGATAATTTAATTGATTTGAGTTTAACCTCTTTGACACAGCCTTCTACACAGATAGAAGATGAGGTTGGGACAAAGGATAGTGTT
CAAGAACAGTTAGCTGAAACAGTTGTTCCTATAGATGTTTCACTGAGGAGATCTGTTAGAGATCGACGTCCGTCAACAAGATACTCATTAGATGAATATCTGCTATTGAC
TGATAGAGGAGAACCTGAGAGTTATGAAGAGCTTGTTAAGTTACCTAAAGGAAAAACTGCACTGAACAATAAGTGGGTTTACAGAATTAAACATGAAGAACATACCTCAA
AGCCACGTTACAAAGCAAGATTAGTTATCAAAGGGTTCAATCAGAAGAAATGTATCGACTTTGATGAAAATTTTACTCCAGTTGTCAAGATGTCCTTGATACATGTTGTT
ATGGGTTTGGCAGCCAGTCTTAACTTAGAGGTTGGGCAGATGGGTGTCAAGACTGCATTTCTTCATAGGGATTTAGACAAAGAAATCTATATGGAACAACAAGAGGGTTT
TGAGCAGAAAGGAAAAGAGCATCTAGTGTCTAAATTGAAGAAAACTCTCTATGGGTTGAAACAAGCACCAAGACAGTGGTACAAGAAATTTGAGTCAGTTATGGGGGAGC
AAGGCTACAGAAAAACTACTTCTGATCACTGTGTTTTTGTCCAGAAATTTTCTGATGATGATTTTGTTATATTATTACTCTATGTTGATGATATTTTGATTGTTGGCAAG
AATGTTTCAAGAATTTATAACTTGAAGAAACAGTTGAGCAAATCCTTTGCCATGAAGGATTTAGGGCCAGCAAAGAAAGTTCTTGGAATTCAAATAGTTTGA
mRNA sequenceShow/hide mRNA sequence
TTTCATGCCTTTGTTGAGAGAGAAACTGGTGAAAAGCTCAAGTGTGTTAGAACTGATAATGGAGGTGAGTATTGTGGACCTTTTGATGAATATTATAGAAATCATGACAT
TCGACATCAAAAGACACCTCCTAAGACCCCGCAGTTAAATGGGATAGCTGAAAAATTGAACAAAACATTGGTTGAGAGAGTGAGATGCTTATTATTTGAATCACATTTGC
CAAAGTCATTTTGGGGCGAAGCTTTAAATACAGTTGTACATGTTTTGAATCTCACACCATGTGTTCCATTGGGATCAGAAGTTCCAAACAGAAAATGGTCAGGTAAGGAT
ATATCTTACAGTCACCTACGTGTCTTTGGTTGTAAAGCTTTTGTTCATGTACCTAAAGATGAAAGTTCAAAGAATGATGCAAAAACCAAAGCATGTGTGTTTCTTGGTTA
TGGCCAAGATGAGTTTGGTTATAGATTATATGATCCAACTAAGAAAAAGCTTATAAGAAGTCGAGATGTTGTATTTGTTGAAGACCAAACAATAGCAGACATTGAGAAAA
TAGATGAACCAGAGTCTAAGCATAGTGATAATTTAATTGATTTGAGTTTAACCTCTTTGACACAGCCTTCTACACAGATAGAAGATGAGGTTGGGACAAAGGATAGTGTT
CAAGAACAGTTAGCTGAAACAGTTGTTCCTATAGATGTTTCACTGAGGAGATCTGTTAGAGATCGACGTCCGTCAACAAGATACTCATTAGATGAATATCTGCTATTGAC
TGATAGAGGAGAACCTGAGAGTTATGAAGAGCTTGTTAAGTTACCTAAAGGAAAAACTGCACTGAACAATAAGTGGGTTTACAGAATTAAACATGAAGAACATACCTCAA
AGCCACGTTACAAAGCAAGATTAGTTATCAAAGGGTTCAATCAGAAGAAATGTATCGACTTTGATGAAAATTTTACTCCAGTTGTCAAGATGTCCTTGATACATGTTGTT
ATGGGTTTGGCAGCCAGTCTTAACTTAGAGGTTGGGCAGATGGGTGTCAAGACTGCATTTCTTCATAGGGATTTAGACAAAGAAATCTATATGGAACAACAAGAGGGTTT
TGAGCAGAAAGGAAAAGAGCATCTAGTGTCTAAATTGAAGAAAACTCTCTATGGGTTGAAACAAGCACCAAGACAGTGGTACAAGAAATTTGAGTCAGTTATGGGGGAGC
AAGGCTACAGAAAAACTACTTCTGATCACTGTGTTTTTGTCCAGAAATTTTCTGATGATGATTTTGTTATATTATTACTCTATGTTGATGATATTTTGATTGTTGGCAAG
AATGTTTCAAGAATTTATAACTTGAAGAAACAGTTGAGCAAATCCTTTGCCATGAAGGATTTAGGGCCAGCAAAGAAAGTTCTTGGAATTCAAATAGTTTGA
Protein sequenceShow/hide protein sequence
FHAFVERETGEKLKCVRTDNGGEYCGPFDEYYRNHDIRHQKTPPKTPQLNGIAEKLNKTLVERVRCLLFESHLPKSFWGEALNTVVHVLNLTPCVPLGSEVPNRKWSGKD
ISYSHLRVFGCKAFVHVPKDESSKNDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIADIEKIDEPESKHSDNLIDLSLTSLTQPSTQIEDEVGTKDSV
QEQLAETVVPIDVSLRRSVRDRRPSTRYSLDEYLLLTDRGEPESYEELVKLPKGKTALNNKWVYRIKHEEHTSKPRYKARLVIKGFNQKKCIDFDENFTPVVKMSLIHVV
MGLAASLNLEVGQMGVKTAFLHRDLDKEIYMEQQEGFEQKGKEHLVSKLKKTLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGK
NVSRIYNLKKQLSKSFAMKDLGPAKKVLGIQIV