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CSPI05G12540 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G12540
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionProcollagen-proline 3-dioxygenase
Genome locationChr5:11803561..11804709
RNA-Seq ExpressionCSPI05G12540
SyntenyCSPI05G12540
Gene Ontology termsGO:0019511 - peptidyl-proline hydroxylation (biological process)
GO:0032963 - collagen metabolic process (biological process)
GO:0005506 - iron ion binding (molecular function)
GO:0019797 - procollagen-proline 3-dioxygenase activity (molecular function)
GO:0031418 - L-ascorbic acid binding (molecular function)
InterPro domainsIPR039575 - Prolyl 3-hydroxylase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK14443.1 prolyl 3-hydroxylase 1 [Cucumis melo var. makuwa]8.3e-4397.83Show/hide
Query:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
        MVDGAESRQRRRLILENFLSREECRELEFIHKSC TVGYRPNV STTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
Subjt:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI

XP_004140463.1 prolyl 3-hydroxylase 1 [Cucumis sativus]4.4e-44100Show/hide
Query:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
        MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
Subjt:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI

XP_008456831.1 PREDICTED: uncharacterized protein LOC103496668 isoform X1 [Cucumis melo]8.3e-4397.83Show/hide
Query:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
        MVDGAESRQRRRLILENFLSREECRELEFIHKSC TVGYRPNV STTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
Subjt:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI

XP_008456833.1 PREDICTED: uncharacterized protein LOC103496668 isoform X2 [Cucumis melo]8.3e-4397.83Show/hide
Query:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
        MVDGAESRQRRRLILENFLSREECRELEFIHKSC TVGYRPNV STTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
Subjt:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI

XP_038893062.1 uncharacterized protein LOC120081945 [Benincasa hispida]2.8e-3889.36Show/hide
Query:  MVDGAES--RQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
        M D  ES  R+RRRLILENFL+REECRELEFIHKSC TVGYRPNVFSTTLLHLVATNSAHLI+PFVPIRE+LKEKAEEFFGCHYELFVEFTGLI
Subjt:  MVDGAES--RQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI

TrEMBL top hitse value%identityAlignment
A0A0A0KMN7 Procollagen-proline 3-dioxygenase2.1e-44100Show/hide
Query:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
        MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
Subjt:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI

A0A1S3C486 Procollagen-proline 3-dioxygenase4.0e-4397.83Show/hide
Query:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
        MVDGAESRQRRRLILENFLSREECRELEFIHKSC TVGYRPNV STTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
Subjt:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI

A0A1S3C4U3 uncharacterized protein LOC103496668 isoform X24.0e-4397.83Show/hide
Query:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
        MVDGAESRQRRRLILENFLSREECRELEFIHKSC TVGYRPNV STTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
Subjt:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI

A0A5A7SSL8 Procollagen-proline 3-dioxygenase4.0e-4397.83Show/hide
Query:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
        MVDGAESRQRRRLILENFLSREECRELEFIHKSC TVGYRPNV STTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
Subjt:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI

A0A5D3CRE9 Procollagen-proline 3-dioxygenase4.0e-4397.83Show/hide
Query:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
        MVDGAESRQRRRLILENFLSREECRELEFIHKSC TVGYRPNV STTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
Subjt:  MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G68080.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein1.9e-3276.47Show/hide
Query:  RQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
        ++  RLIL NFLS  EC+ELE IHKS ST+GYRPNVFSTTL HL+ATNS HLIIPFV IRE+LKEK EE FGC YELF+EFTGLI
Subjt:  RQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI

AT1G68080.2 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein1.9e-3276.47Show/hide
Query:  RQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
        ++  RLIL NFLS  EC+ELE IHKS ST+GYRPNVFSTTL HL+ATNS HLIIPFV IRE+LKEK EE FGC YELF+EFTGLI
Subjt:  RQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI

AT1G68080.3 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein1.9e-3276.47Show/hide
Query:  RQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI
        ++  RLIL NFLS  EC+ELE IHKS ST+GYRPNVFSTTL HL+ATNS HLIIPFV IRE+LKEK EE FGC YELF+EFTGLI
Subjt:  RQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGATGGAGCTGAGAGCAGGCAGCGGCGGCGTCTGATTCTTGAAAATTTCCTAAGCCGCGAAGAATGCAGGGAACTGGAGTTCATCCATAAGAGCTGCTCTACGGT
GGGGTATAGACCAAACGTCTTTTCCACCACTCTGTTGCATCTTGTTGCCACCAATTCCGCTCATTTGATCATCCCTTTTGTACCGATTAGAGAGAAGTTGAAGGAGAAAG
CCGAGGAATTCTTTGGGTGTCATTATGAGCTATTTGTTGAGTTCACTGGCTTGATCAGACCTGTGAGGAAACAAATTAAAAGGATAGCAGCTCCTAAGCTACTTATTCAA
GCTCTTCCTCGACATTATTCTCGAAAAGGTGCTCACTCCCTTGCATCCAAGTTATCGAATGCTCATAATGATCTTATTGATGTTGCTTGTGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGATGGAGCTGAGAGCAGGCAGCGGCGGCGTCTGATTCTTGAAAATTTCCTAAGCCGCGAAGAATGCAGGGAACTGGAGTTCATCCATAAGAGCTGCTCTACGGT
GGGGTATAGACCAAACGTCTTTTCCACCACTCTGTTGCATCTTGTTGCCACCAATTCCGCTCATTTGATCATCCCTTTTGTACCGATTAGAGAGAAGTTGAAGGAGAAAG
CCGAGGAATTCTTTGGGTGTCATTATGAGCTATTTGTTGAGTTCACTGGCTTGATCAGACCTGTGAGGAAACAAATTAAAAGGATAGCAGCTCCTAAGCTACTTATTCAA
GCTCTTCCTCGACATTATTCTCGAAAAGGTGCTCACTCCCTTGCATCCAAGTTATCGAATGCTCATAATGATCTTATTGATGTTGCTTGTGTGTGA
Protein sequenceShow/hide protein sequence
MVDGAESRQRRRLILENFLSREECRELEFIHKSCSTVGYRPNVFSTTLLHLVATNSAHLIIPFVPIREKLKEKAEEFFGCHYELFVEFTGLIRPVRKQIKRIAAPKLLIQ
ALPRHYSRKGAHSLASKLSNAHNDLIDVACV