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CSPI05G12560 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G12560
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA repair protein XRCC2 homolog isoform X2
Genome locationChr5:11823272..11829440
RNA-Seq ExpressionCSPI05G12560
SyntenyCSPI05G12560
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0005657 - replication fork (cellular component)
GO:0033063 - Rad51B-Rad51C-Rad51D-XRCC2 complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR030547 - DNA repair protein XRCC2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648111.1 hypothetical protein Csa_004719 [Cucumis sativus]1.7e-61100Show/hide
Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP
        KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP

Query:  TYSSEWLLPSLGFLDKFIVTN
        TYSSEWLLPSLGFLDKFIVTN
Subjt:  TYSSEWLLPSLGFLDKFIVTN

XP_008456835.1 PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo]7.5e-5791.74Show/hide
Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP
        KGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS+ V+RDK+LSESEL+HGKPDGGLGLYREYMPSAWQSFVTHRVFVR+SDEHL  SSCEHQP
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP

Query:  TYSSEWLLPSLGFLDKFIVTN
        TYSSEWLLPSLGF+DKFIVTN
Subjt:  TYSSEWLLPSLGFLDKFIVTN

XP_008456836.1 PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo]5.1e-6192.19Show/hide
Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP
        KGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS+ V+RDK+LSESEL+HGKPDGGLGLYREYMPSAWQSFVTHRVFVR+SDEHL  SSCEHQP
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP

Query:  TYSSEWLLPSLGFLDKFIVTNAGVFSVP
        TYSSEWLLPSLGF+DKFIVTNAGVFSVP
Subjt:  TYSSEWLLPSLGFLDKFIVTNAGVFSVP

XP_011655113.1 DNA repair protein XRCC2 homolog isoform X1 [Cucumis sativus]1.2e-65100Show/hide
Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP
        KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP

Query:  TYSSEWLLPSLGFLDKFIVTNAGVFSVP
        TYSSEWLLPSLGFLDKFIVTNAGVFSVP
Subjt:  TYSSEWLLPSLGFLDKFIVTNAGVFSVP

XP_031741381.1 DNA repair protein XRCC2 homolog isoform X2 [Cucumis sativus]1.2e-65100Show/hide
Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP
        KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP

Query:  TYSSEWLLPSLGFLDKFIVTNAGVFSVP
        TYSSEWLLPSLGFLDKFIVTNAGVFSVP
Subjt:  TYSSEWLLPSLGFLDKFIVTNAGVFSVP

TrEMBL top hitse value%identityAlignment
A0A0A0KMH0 RECA_2 domain-containing protein5.6e-66100Show/hide
Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP
        KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP

Query:  TYSSEWLLPSLGFLDKFIVTNAGVFSVP
        TYSSEWLLPSLGFLDKFIVTNAGVFSVP
Subjt:  TYSSEWLLPSLGFLDKFIVTNAGVFSVP

A0A1S3C3R7 DNA repair protein XRCC2 homolog isoform X13.7e-5791.74Show/hide
Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP
        KGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS+ V+RDK+LSESEL+HGKPDGGLGLYREYMPSAWQSFVTHRVFVR+SDEHL  SSCEHQP
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP

Query:  TYSSEWLLPSLGFLDKFIVTN
        TYSSEWLLPSLGF+DKFIVTN
Subjt:  TYSSEWLLPSLGFLDKFIVTN

A0A1S3C491 DNA repair protein XRCC2 homolog isoform X22.4e-6192.19Show/hide
Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP
        KGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS+ V+RDK+LSESEL+HGKPDGGLGLYREYMPSAWQSFVTHRVFVR+SDEHL  SSCEHQP
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP

Query:  TYSSEWLLPSLGFLDKFIVTNAGVFSVP
        TYSSEWLLPSLGF+DKFIVTNAGVFSVP
Subjt:  TYSSEWLLPSLGFLDKFIVTNAGVFSVP

A0A6J1GYM0 DNA repair protein XRCC2 homolog isoform X21.6e-5282.81Show/hide
Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP
        KGFSLAN+LEAAVEEV+KLLLVHPSIVIASKATIFGDRSSD V+R+K+LSE+E +HGK DGG  LYREYMPSAWQSFVTHRVFVR SDE+L +SSCEHQ 
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP

Query:  TYSSEWLLPSLGFLDKFIVTNAGVFSVP
         Y SEWLLPSLG LDKFIV NAGVF VP
Subjt:  TYSSEWLLPSLGFLDKFIVTNAGVFSVP

A0A6J1GZX5 DNA repair protein XRCC2 homolog isoform X11.6e-5282.81Show/hide
Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP
        KGFSLAN+LEAAVEEV+KLLLVHPSIVIASKATIFGDRSSD V+R+K+LSE+E +HGK DGG  LYREYMPSAWQSFVTHRVFVR SDE+L +SSCEHQ 
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP

Query:  TYSSEWLLPSLGFLDKFIVTNAGVFSVP
         Y SEWLLPSLG LDKFIV NAGVF VP
Subjt:  TYSSEWLLPSLGFLDKFIVTNAGVFSVP

SwissProt top hitse value%identityAlignment
Q682D3 DNA repair protein XRCC2 homolog1.8e-1638.52Show/hide
Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGK--PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEH
        K  SL NV+E  V+E++KLLLVH  +V+A+K TI+ +    A + ++ +S ++   G          +RE+MPS+WQ+FVTH++ +R S ++  L + + 
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGK--PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEH

Query:  Q-PTYSSEWLLPSLGFLDKFIV
            YS EWL P L  +D+FIV
Subjt:  Q-PTYSSEWLLPSLGFLDKFIV

Arabidopsis top hitse value%identityAlignment
AT5G64520.1 homolog of X-ray repair cross complementing 2 (XRCC2)1.3e-1738.52Show/hide
Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGK--PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEH
        K  SL NV+E  V+E++KLLLVH  +V+A+K TI+ +    A + ++ +S ++   G          +RE+MPS+WQ+FVTH++ +R S ++  L + + 
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGK--PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEH

Query:  Q-PTYSSEWLLPSLGFLDKFIV
            YS EWL P L  +D+FIV
Subjt:  Q-PTYSSEWLLPSLGFLDKFIV

AT5G64520.2 homolog of X-ray repair cross complementing 2 (XRCC2)1.3e-1738.52Show/hide
Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGK--PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEH
        K  SL NV+E  V+E++KLLLVH  +V+A+K TI+ +    A + ++ +S ++   G          +RE+MPS+WQ+FVTH++ +R S ++  L + + 
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGK--PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEH

Query:  Q-PTYSSEWLLPSLGFLDKFIV
            YS EWL P L  +D+FIV
Subjt:  Q-PTYSSEWLLPSLGFLDKFIV

AT5G64520.3 homolog of X-ray repair cross complementing 2 (XRCC2)1.6e-0450Show/hide
Query:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDR
        K  SL NV+E  V+E++KLLLVH  +V+A+K TI+ ++
Subjt:  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGGTCTGGCCCCAATCCATTAGGGAAAGGCTTTTCTCTTGCGAATGTGCTAGAAGCTGCAGTAGAAGAGGTTAGAAAGCTTTTACTAGTGCATCCGAGTATTGT
TATTGCTTCAAAAGCAACCATTTTTGGGGATAGATCTTCTGACGCAGTTAAACGTGATAAAACTTTATCAGAGTCAGAATTAAAGCATGGGAAACCCGATGGTGGACTAG
GTTTGTACCGAGAGTATATGCCTTCTGCATGGCAGTCTTTTGTCACGCACAGAGTTTTTGTTCGAAACTCAGATGAACATCTTAAATTGAGCAGTTGTGAGCATCAACCA
ACATATTCTTCTGAATGGCTGCTACCATCCCTAGGTTTCCTCGATAAATTTATTGTGACAAATGCTGGCGTCTTTTCAGTACCC
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGGTCTGGCCCCAATCCATTAGGGAAAGGCTTTTCTCTTGCGAATGTGCTAGAAGCTGCAGTAGAAGAGGTTAGAAAGCTTTTACTAGTGCATCCGAGTATTGT
TATTGCTTCAAAAGCAACCATTTTTGGGGATAGATCTTCTGACGCAGTTAAACGTGATAAAACTTTATCAGAGTCAGAATTAAAGCATGGGAAACCCGATGGTGGACTAG
GTTTGTACCGAGAGTATATGCCTTCTGCATGGCAGTCTTTTGTCACGCACAGAGTTTTTGTTCGAAACTCAGATGAACATCTTAAATTGAGCAGTTGTGAGCATCAACCA
ACATATTCTTCTGAATGGCTGCTACCATCCCTAGGTTTCCTCGATAAATTTATTGTGACAAATGCTGGCGTCTTTTCAGTACCC
Protein sequenceShow/hide protein sequence
MGRSGPNPLGKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP
TYSSEWLLPSLGFLDKFIVTNAGVFSVP