; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G12600 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G12600
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionBeta-galactosidase
Genome locationChr5:11886907..11887781
RNA-Seq ExpressionCSPI05G12600
SyntenyCSPI05G12600
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025813.1 Beta-galactosidase [Cucumis melo var. makuwa]3.4e-3786.46Show/hide
Query:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY
        ++SGRTIGTARHS GLYIL+D+TSGSSIS TSLLSSYFSTS HDFMLWHF LGHPNFTYMKYLF HLFPKIDVSSL CDVCIR K H VSFPSQPY
Subjt:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY
KAA0066242.1 Beta-galactosidase [Cucumis melo var. makuwa]2.2e-3685.42Show/hide
Query:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY
        ++SGRTIGTARHSRGLYIL+DDTSGSSIS TSLLSSY STS HD+MLWHF LGHPNFTYMKYLF HLF KIDVSSL CDVCIR K H VSFPSQPY
Subjt:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY
TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]4.1e-3575Show/hide
Query:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY-PKQ
        MSSGRTIGTARHSRGLYILDDDTS SS+SR SLLSSYFSTS  D MLWHF LGHPNFTYM++LF HLF K+DVSSL CDVCIR K H VSFPSQPY P Q
Subjt:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY-PKQ

Query:  RLGSLQGHHLIW
            +  H  +W
Subjt:  RLGSLQGHHLIW
TYK02021.1 Beta-galactosidase [Cucumis melo var. makuwa]3.1e-3583.33Show/hide
Query:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY
        ++S RTIGTARHSRG+YIL+DDTSGS+IS TSLLSSYFSTS HDFMLWHF LGHPN TYMKYLF HLF KIDVSSL CDVCIR K H VSFPSQPY
Subjt:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY
TYK08054.1 Beta-galactosidase [Cucumis melo var. makuwa]4.1e-3575Show/hide
Query:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY-PKQ
        MSSGRTIGTARHSRGLYILDDDTS SS+SR SLLSSYFSTS  D MLWHF LGHPNFTYM++LF HLF K+DVSSL CDVCIR K H VSFPSQPY P Q
Subjt:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY-PKQ

Query:  RLGSLQGHHLIW
            +  H  +W
Subjt:  RLGSLQGHHLIW
TrEMBL top hitse value%identityAlignment
A0A5A7VD20 Beta-galactosidase1.1e-3685.42Show/hide
Query:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY
        ++SGRTIGTARHSRGLYIL+DDTSGSSIS TSLLSSY STS HD+MLWHF LGHPNFTYMKYLF HLF KIDVSSL CDVCIR K H VSFPSQPY
Subjt:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY
A0A5D3BJK7 Beta-galactosidase2.0e-3575Show/hide
Query:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY-PKQ
        MSSGRTIGTARHSRGLYILDDDTS SS+SR SLLSSYFSTS  D MLWHF LGHPNFTYM++LF HLF K+DVSSL CDVCIR K H VSFPSQPY P Q
Subjt:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY-PKQ

Query:  RLGSLQGHHLIW
            +  H  +W
Subjt:  RLGSLQGHHLIW
A0A5D3BQI5 Beta-galactosidase1.5e-3583.33Show/hide
Query:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY
        ++S RTIGTARHSRG+YIL+DDTSGS+IS TSLLSSYFSTS HDFMLWHF LGHPN TYMKYLF HLF KIDVSSL CDVCIR K H VSFPSQPY
Subjt:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY
A0A5D3C4T4 Beta-galactosidase2.0e-3575Show/hide
Query:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY-PKQ
        MSSGRTIGTARHSRGLYILDDDTS SS+SR SLLSSYFSTS  D MLWHF LGHPNFTYM++LF HLF K+DVSSL CDVCIR K H VSFPSQPY P Q
Subjt:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY-PKQ

Query:  RLGSLQGHHLIW
            +  H  +W
Subjt:  RLGSLQGHHLIW
A0A5D3CCR1 Beta-galactosidase1.6e-3786.46Show/hide
Query:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY
        ++SGRTIGTARHS GLYIL+D+TSGSSIS TSLLSSYFSTS HDFMLWHF LGHPNFTYMKYLF HLFPKIDVSSL CDVCIR K H VSFPSQPY
Subjt:  MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTK-HLVSFPSQPY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCGGGGAGGACGATTGGCACTGCCCGACATAGCAGGGGACTTTACATCCTTGATGATGATACCTCCGGTAGTAGTATCTCTAGGACTAGTTTACTATCTTCCTA
TTTTAGCACTTCTGGACATGACTTTATGTTGTGGCATTTTCTGTTGGGTCACCCGAACTTTACTTATATGAAATATTTGTTTTTCCATCTTTTTCCTAAAATTGATGTCT
CCTCGTTACCTTGTGATGTGTGCATTCGGACAAAACATCTGGTTTCTTTTCCTTCACAACCTTATCCAAAGCAACGTTTGGGGTCCCTCCAAGGTCACCACCTCATCTGG
GAAATGGTGGTTTGTAACTTTCATTGA
mRNA sequenceShow/hide mRNA sequence
GTTGGCAACTCCACAGTCGACCCCCAAGAGCTAACAAACGTTCCTCCAACAAGCACTCAGGACGTACCAATGTTAGGGAGATTGCCAATACCTCTCAGTCAACTGGCCCT
ACTACTAGCCAGACCGGCCCTCCTACCCTAGACGCCATTGCTCGATCAGGTATGCCTTAGTCCCTCGGTCTTATTAGTGGTGATGGGAAGAATCCCTGGATTTTGGACCC
AGGGGCAACATATCACTTGATAGGTTCTTCGGAGCACTTTGTCTCTCATACACCCTGTGTCGATAATGAGAAAATCAAGATAGCAGACGGTTCTTTAACCCCCGATTGCT
GGCAAAGGATAAATAGTTCTCCTTGACGGTTTGTCTCTCCAGAATGTTTTGCATGTGTCTAAGCTTTCTTACAATTTGTTATCTATCAGTACGATCACCCGTGAGCTGCA
CTGTAAAGCCACTTTCTTACCTAAATCTGTTTGTTTTCAGGACATGAGTTCGGGGAGGACGATTGGCACTGCCCGACATAGCAGGGGACTTTACATCCTTGATGATGATA
CCTCCGGTAGTAGTATCTCTAGGACTAGTTTACTATCTTCCTATTTTAGCACTTCTGGACATGACTTTATGTTGTGGCATTTTCTGTTGGGTCACCCGAACTTTACTTAT
ATGAAATATTTGTTTTTCCATCTTTTTCCTAAAATTGATGTCTCCTCGTTACCTTGTGATGTGTGCATTCGGACAAAACATCTGGTTTCTTTTCCTTCACAACCTTATCC
AAAGCAACGTTTGGGGTCCCTCCAAGGTCACCACCTCATCTGGGAAATGGTGGTTTGTAACTTTCATTGATAATCATACCCGTCTTACCTGGGTTTACCTTATCA
Protein sequenceShow/hide protein sequence
MSSGRTIGTARHSRGLYILDDDTSGSSISRTSLLSSYFSTSGHDFMLWHFLLGHPNFTYMKYLFFHLFPKIDVSSLPCDVCIRTKHLVSFPSQPYPKQRLGSLQGHHLIW
EMVVCNFH