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CSPI05G12740 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G12740
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon protein, putative, unclassified
Genome locationChr5:12049429..12049932
RNA-Seq ExpressionCSPI05G12740
SyntenyCSPI05G12740
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031741708.1 uncharacterized protein LOC116403903 [Cucumis sativus]1.4e-6077.98Show/hide
Query:  MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQE
        MNKG  F GTD    RGR RGRGRGTE Q++AGGTSNT NGTRDKS  KC   NKMRHYASECRGKG DDEAHLTCV EEE   MMVVSQEGT  RCDQE
Subjt:  MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQE

Query:  DVILLNKERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK
        + ILL KERLL EMY NDKNGEN  VWYLDNGASNHMT HREKF ELD+SFTGRVKFGDG  IQ MEK
Subjt:  DVILLNKERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK

XP_031741713.1 uncharacterized protein LOC116403908 [Cucumis sativus]3.0e-6882.14Show/hide
Query:  MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQE
        MNKG RF G D    RGR RGRGRGTERQ++AGGTSNTGNGTRDKSH KC   NKM HYA E RGKGHD+E+HLTCV EEEPTLMM +SQEGTR RCDQE
Subjt:  MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQE

Query:  DVILLNKERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK
        D ILLNKERLL EMYCNDKNGEN DVWYLDNGASNHM  HREKFQELDESFTG+VKFGDG TIQIMEK
Subjt:  DVILLNKERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK

XP_031741744.1 uncharacterized protein LOC116403940 [Cucumis sativus]1.3e-6680.95Show/hide
Query:  MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQE
        MNKG  F GTD    RGR RGRGRGTERQ++AGGT+NTGNGTRDKSH KC   NKM HYASEC GKG DDEAHLTCV EEEP+LMM +SQEGTR RCDQE
Subjt:  MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQE

Query:  DVILLNKERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK
        D ILL+KERLL EMYCND NGEN DVWYLDNGASNH+T HREKFQELDESFTGRVKFGDGSTIQI  K
Subjt:  DVILLNKERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK

XP_031745073.1 uncharacterized protein LOC116405251 [Cucumis sativus]1.6e-6179.87Show/hide
Query:  MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQE
        M KG  F GTD    RGR RGRGRGTERQ++AGGTSNTGNGTRDKSH KC   NKM HYASECRGKG D+EAHLTC  EEEPTLMM +SQEGTR  CDQE
Subjt:  MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQE

Query:  DVILLNKERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGD
        D ILL+KERLL EMYCN+KNGEN DVWYLDNGASNHM  HR+KFQELDESFTGRVKFGD
Subjt:  DVILLNKERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGD

XP_042450925.1 uncharacterized protein LOC122035851 [Zingiber officinale]2.2e-5067.26Show/hide
Query:  KGHRFCGTDRG--RRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQE
        KG      +RG  R RGRGRGRGRGT+RQ +AGGTS+  +GTRDK H KC    KM HYASEC  K H DEAHLTCVA+EEPTLMM V  E +  R +++
Subjt:  KGHRFCGTDRG--RRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQE

Query:  DVILLNKERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK
        D+ILLN+ERLL EMY N K  E+ DVWYLDNGASNHMT HREKFQELDE+ TGRV+FGDGSTI+IM K
Subjt:  DVILLNKERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK

TrEMBL top hitse value%identityAlignment
A0A251U1A0 Putative zinc finger, CCHC-type1.1e-2346.06Show/hide
Query:  GTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGT----RDKSHSKCLG-NKMRHYASECRG-KGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVI
        G   G R GRG GRGRG     N G   + GN +    RDKSH KC   N+  HYASEC+  K  D E HLT   E+EPTL++ V  E      + + ++
Subjt:  GTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGT----RDKSHSKCLG-NKMRHYASECRG-KGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVI

Query:  LLNKERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK
        LLN+E++  +++   +NG N D WYLDNGASNHMT  ++ F EL+E+ TG+V+FGDGS ++I  K
Subjt:  LLNKERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK

A0A5A7SIJ0 Keratin, type I cytoskeletal 9-like2.1e-3559.87Show/hide
Query:  GRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYC
        G   G  RGT+ Q+ AGGTSNT NGTRDKSH KC   NKM+HY +EC  KG DD AHLT   ++EP LM+     GT I  D+   +LL+KE+LL ++Y 
Subjt:  GRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYC

Query:  NDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK
        N+KN EN  VWYL+NGASNHMT+H EK QELD S TGRVKF + STIQIM K
Subjt:  NDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK

A0A5K0VFR7 Uncharacterized protein (Fragment)2.2e-2443.02Show/hide
Query:  GHRFCGT----DRGRRRGRGRGRGRG----TERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRI
        GHR  G      RGR RGRGRG GRG     +R S +GG        RD+SH +C   N++ HYA  C+     +EAHLT   + EPTL++   +E    
Subjt:  GHRFCGT----DRGRRRGRGRGRGRG----TERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRI

Query:  R------CDQEDVILLNKERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK
                ++++ +LLN+E++  E++  +   E TD WYLDNGA+NHMT  + KF+EL+E+ TG VKFGDGS++QIM K
Subjt:  R------CDQEDVILLNKERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK

Q10F84 Gag-pol polyprotein1.8e-2143.21Show/hide
Query:  GTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGKGHDDEAHLTCVAEEEPTLMMVVSQE-GTRIRCDQEDVILLN
        G +RG + GRGRGRGRG     ++GG S  G+G RDKSH KC    +  HY+++C   K    EAHL    +  PTL++ V++      R D    ++++
Subjt:  GTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGKGHDDEAHLTCVAEEEPTLMMVVSQE-GTRIRCDQEDVILLN

Query:  KERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK
        +ER+   +   +K     D+WYLDNGASNHM+    KF+ELDE+ TG+V+FGD S++QIM K
Subjt:  KERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK

Q84SW8 Retrotransposon protein, putative, unclassified1.8e-2143.21Show/hide
Query:  GTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGKGHDDEAHLTCVAEEEPTLMMVVSQE-GTRIRCDQEDVILLN
        G +RG + GRGRGRGRG     ++GG S  G+G RDKSH KC    +  HY+++C   K    EAHL    +  PTL++ V++      R D    ++++
Subjt:  GTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGKGHDDEAHLTCVAEEEPTLMMVVSQE-GTRIRCDQEDVILLN

Query:  KERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK
        +ER+   +   +K     D+WYLDNGASNHM+    KF+ELDE+ TG+V+FGD S++QIM K
Subjt:  KERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAAGGGCACAGATTTTGTGGTACCGATCGAGGAAGACGGCGAGGACGTGGTCGTGGCCGTGGTCGTGGCACTGAGCGTCAAAGTAATGCGGGAGGCACTAGCAA
CACTGGAAATGGCACTCGTGATAAAAGTCACAGTAAATGTTTGGGCAACAAGATGAGACATTACGCGTCGGAATGTCGTGGAAAAGGTCATGACGACGAAGCTCATCTAA
CTTGTGTCGCCGAAGAAGAACCGACTTTGATGATGGTCGTGTCCCAGGAGGGGACACGCATTAGATGTGATCAGGAGGATGTCATACTACTCAACAAAGAGCGGTTGTTG
CTAGAGATGTATTGCAACGACAAGAATGGAGAAAATACTGATGTTTGGTATCTTGACAACGGTGCTAGTAACCACATGACTAGCCATCGTGAGAAGTTCCAAGAATTAGA
TGAAAGCTTCACTGGGAGGGTGAAGTTTGGCGATGGATCAACCATTCAGATCATGGAAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAAAGGGCACAGATTTTGTGGTACCGATCGAGGAAGACGGCGAGGACGTGGTCGTGGCCGTGGTCGTGGCACTGAGCGTCAAAGTAATGCGGGAGGCACTAGCAA
CACTGGAAATGGCACTCGTGATAAAAGTCACAGTAAATGTTTGGGCAACAAGATGAGACATTACGCGTCGGAATGTCGTGGAAAAGGTCATGACGACGAAGCTCATCTAA
CTTGTGTCGCCGAAGAAGAACCGACTTTGATGATGGTCGTGTCCCAGGAGGGGACACGCATTAGATGTGATCAGGAGGATGTCATACTACTCAACAAAGAGCGGTTGTTG
CTAGAGATGTATTGCAACGACAAGAATGGAGAAAATACTGATGTTTGGTATCTTGACAACGGTGCTAGTAACCACATGACTAGCCATCGTGAGAAGTTCCAAGAATTAGA
TGAAAGCTTCACTGGGAGGGTGAAGTTTGGCGATGGATCAACCATTCAGATCATGGAAAAATGA
Protein sequenceShow/hide protein sequence
MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLGNKMRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLL
LEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK