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CSPI05G12800 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G12800
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon protein, putative, unclassified
Genome locationChr5:12172632..12172871
RNA-Seq ExpressionCSPI05G12800
SyntenyCSPI05G12800
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6494785.1 hypothetical protein ZIOFF_042546 [Zingiber officinale]3.6e-2574.68Show/hide
Query:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS
        MAM RSLLK  H+PA+FWGEA              ALGERTPFEAWMGRKPHL+HLRVFGCVAYVKNTTPHLKKLDDRS
Subjt:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS

KAG6503176.1 hypothetical protein ZIOFF_035487 [Zingiber officinale]3.6e-2573.42Show/hide
Query:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS
        MAMTRSLLK  H+PA+FWGEA              ALGERTPFEAWMGRKPHLAHL+VFGC+AY KNTTPHLKKLDDRS
Subjt:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS

KAG6515151.1 hypothetical protein ZIOFF_025536 [Zingiber officinale]9.6e-2675.95Show/hide
Query:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS
        MAMTRSLLK  H+PA+FWGEA              ALG+RTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS
Subjt:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS

KAG6522061.1 hypothetical protein ZIOFF_019195 [Zingiber officinale]3.6e-2573.42Show/hide
Query:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS
        MAMTRSLLK  H+PA+FWGEA              ALGERTPFEAWMGRKPHLAHL+VFGC+AY KNTTPHLKKLDDRS
Subjt:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS

KAG6536093.1 hypothetical protein ZIOFF_001137 [Zingiber officinale]2.8e-2574.68Show/hide
Query:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS
        MAMTRSLLK  H+PA+FWGEA              ALG+RTPFEAWMGRKPHL HLRVFGCVAYVKNTTPHLKKLDDRS
Subjt:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS

TrEMBL top hitse value%identityAlignment
Q10DG5 Putative polyprotein1.9e-1962.03Show/hide
Query:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS
        M M RSLLK M VP + WGEA              A+G RTP+EAW G+KPHLAHLRVFGC A+ K TTPHLKKLDDRS
Subjt:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS

Q10F84 Gag-pol polyprotein3.2e-1962.03Show/hide
Query:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS
        MAM RSLLK M VP + WGEA              A+G RTPFEAW G+KPHL HLRVFGC A+ K T PHLKKLDDRS
Subjt:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS

Q10RM4 Retrotransposon protein, putative, unclassified2.9e-2063.29Show/hide
Query:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS
        MAM RSLLK M VP +FWGEA              A+G+RTPFEAW GRKP L HL+VFGC A+ KNT PHLKKLDDRS
Subjt:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS

Q60EG1 Putative polyprotein3.2e-1962.03Show/hide
Query:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS
        MAM RSLLK M VP + WGEA              ++GERTPFEAW G+KPHL HLRVFGC A+ K TTP+LKKLDDRS
Subjt:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS

Q8H8L9 Retrotransposon protein, putative, unclassified1.9e-1962.03Show/hide
Query:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS
        M M RSLLK M VP + WGEA              A+G RTP+EAW G+KPHLAHLRVFGC A+ K TTPHLKKLDDRS
Subjt:  MAMTRSLLKSMHVPAKFWGEA--------------ALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.0e-0634.57Show/hide
Query:  RSLLKSMHVPAKFWGEAAL----------------GERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLK----KLDDRS
        R+++    +   FWGEA L                  +TP+E W  +KP+L HLRVFG   YV     H+K    K DD+S
Subjt:  RSLLKSMHVPAKFWGEAAL----------------GERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLK----KLDDRS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATGACGAGATCACTCCTCAAAAGCATGCATGTGCCTGCAAAATTTTGGGGAGAGGCAGCCCTTGGAGAACGCACACCATTTGAAGCTTGGATGGGGAGAAAGCC
ACATCTTGCACACTTGAGAGTCTTTGGTTGTGTGGCATATGTAAAGAACACAACCCCTCACCTCAAGAAACTCGACGATCGAAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGATGACGAGATCACTCCTCAAAAGCATGCATGTGCCTGCAAAATTTTGGGGAGAGGCAGCCCTTGGAGAACGCACACCATTTGAAGCTTGGATGGGGAGAAAGCC
ACATCTTGCACACTTGAGAGTCTTTGGTTGTGTGGCATATGTAAAGAACACAACCCCTCACCTCAAGAAACTCGACGATCGAAGCTGA
Protein sequenceShow/hide protein sequence
MAMTRSLLKSMHVPAKFWGEAALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHLKKLDDRS