; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G13030 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G13030
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibonuclease H
Genome locationChr5:12551114..12552121
RNA-Seq ExpressionCSPI05G13030
SyntenyCSPI05G13030
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031737553.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402446 [Cucumis sativus]6.0e-15582.99Show/hide
Query:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC
        MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEW+TRDAKLVP SQYIAKLSQNFEKISFDHVHREDNRMADAL  LTVMFNLNLE ELYPIQIT RDA AYC
Subjt:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC

Query:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----
        MNIENDN PWYFDIKQYIKCREYPYGAS+NDKRTIRRLA NFFLSGEVLYKRNHDM+LLRCVDVEEAKQIM EIHEGICGTHAN H MARQIL S     
Subjt:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----

Query:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP
                                 A SPLHVLSAPW FSLWG+DVIGPIDPKASNGH FILV IDYFTKWIEA SYC+VTRGVVLKFIKKELIC +GLP
Subjt:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP

Query:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP
        +GIITDN KNLNNKMMDEL EKFKINHRNSTPYRP
Subjt:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP

XP_031738857.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]1.0e-15482.99Show/hide
Query:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC
        MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEW+TRDAKLVP SQYIAKLSQNFEKISFDHVHREDNRMADALA L VMFNLNLE ELYPIQIT RDA AYC
Subjt:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC

Query:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----
        MNIENDN PWYFDIKQYIKCREYPYGAS+NDKRTIRRLA NFFLSGEVLYKRNHDM+LLRCVDVEEAKQIM EIHEGICGTHAN H MARQIL S     
Subjt:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----

Query:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP
                                 A SPLHVLSAPW FSLWG+DVIGPIDPKASNGH FILV IDYFTKWIEA SYC+VTRGVVLKFIKKELIC +GLP
Subjt:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP

Query:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP
        +GIITDN KNLNNKMMDEL EKFKINHRNSTPYRP
Subjt:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP

XP_031741309.1 LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus]5.1e-15482.69Show/hide
Query:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC
        MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEW+TRDAKLVP SQYIAKLSQNFEKISFDHVHREDNRMADALA L VMFNLNLE ELYPIQIT RDA AYC
Subjt:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC

Query:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----
        MNIENDN PWYFDIKQYIKCREYPYGAS+NDKRTIRRLA NFFLSGEVLYKRNHDM+LLRCVDVEEAKQIM EIHEGICGTHAN H MARQIL S     
Subjt:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----

Query:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP
                                 A SPLHVLSAPW FSLWG+DVIGPIDPKASNGH FILV IDYFTKWIEA SYC+VTRGVVLKFIKKELIC +GLP
Subjt:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP

Query:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP
        +GIITDN KNLNNKMMDEL EKFKINHRNSTPY P
Subjt:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP

XP_031741698.1 uncharacterized protein LOC116403895 [Cucumis sativus]2.7e-15583.28Show/hide
Query:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC
        MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEW+TRDAKLVP SQYIAKLSQNFEKISFDHVHREDNRMADALA L VMFNLNLE ELYPIQIT RDASAYC
Subjt:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC

Query:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----
        MNIENDN PWYFDIKQYIKCREYPYGAS+NDKRTIRRLA NFFLSGEVLYKRNHDM+LLRCVDVEEAKQIM EIHEGICGTHAN H MARQIL S     
Subjt:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----

Query:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP
                                 A SPLHVLSAPW FSLWG+DVIGPIDPKASNGH FILV IDYFTKWIEA SYC+VTRGVVLKFIKKELIC +GLP
Subjt:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP

Query:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP
        +GIITDN KNLNNKMMDEL EKFKINHRNSTPYRP
Subjt:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP

XP_031742240.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116404130 [Cucumis sativus]2.3e-15482.69Show/hide
Query:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC
        MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEW+TRDAKLVP SQYIAKLSQNFEKISFDHVHREDNRMADALA L VMFNLNLE ELYPIQIT RDA AYC
Subjt:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC

Query:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----
        MNIENDN PWYFDIKQYIKCREYPYGAS+NDKRTI+RLA NFFLSGEVLYKRNHDM+LLRCVDVEEAKQIM EIHEGICGTHAN H MARQIL S     
Subjt:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----

Query:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP
                                 A SPLHVLSAPW FSLWG+DVIGPIDPKASNGH FILV IDYFTKWIEA SYC+VTRGVVLKFIKKELIC +GLP
Subjt:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP

Query:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP
        +GIITDN KNLNNKMMDEL EKFKINHRNSTPYRP
Subjt:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP

TrEMBL top hitse value%identityAlignment
A0A5A7T0A1 Ribonuclease H2.9e-14778.51Show/hide
Query:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC
        MGLQ A DMS+KKLKVLGDSMLVIHQVKEEW+ RDAKLVP SQY+ KLSQNFEKISFDHV REDNRMADALA L VMF+LNLE EL+PIQIT RD  AYC
Subjt:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC

Query:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----
        MN+ NDN PWYFDIKQYIKCREYPY ASENDKRTIRRLA NFFLSGEVLYKRNHDM+LLRCVD EEAKQIMT+I+EGICGTHAN H+MARQIL S     
Subjt:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----

Query:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP
                                 A SPLH+LSAPW FSLWGMDVIGPIDPKASNGH FILV IDYFTKWIEA SYC+VTRGVVLKFIKKELIC +GLP
Subjt:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP

Query:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP
        +GIITDN KNLNNKMMDEL E+FKINHRNSTPYRP
Subjt:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP

A0A5A7T1X2 Ribonuclease H1.4e-14678.21Show/hide
Query:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC
        MGLQ A DMS+KKLKVLGDSMLVIHQVKEEW+TRDAKLVP SQY+ KLSQ FEKISFDHV REDNRMADALA L VMF+LNLE EL+PIQIT RD  AYC
Subjt:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC

Query:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----
        MN+ NDN PWYFDIKQYIKCREYPY ASENDKRTIRRLA NFFLSGEVLYKRNHDM+LLRCVD EEAKQIMT+I+EGICGTHAN H+MARQIL S     
Subjt:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----

Query:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP
                                 A S LH+LSAPW FSLWGMDVIGPIDPKASNGH FILV IDYFTKWIEA SYC+VTRGVVLKFIKKELIC +GLP
Subjt:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP

Query:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP
        +GIITDN KNLNNKMMDEL E+FKINHRNSTPYRP
Subjt:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP

A0A5A7T7R4 Ribonuclease H6.0e-14577.31Show/hide
Query:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC
        MGLQ A DMS+KKLKVLGDSMLVIHQVKEEW+TR AKLVP SQY+ KLSQNFEKISFDHV REDNRMADALA L VMF+LNLE EL+PIQIT RD  AYC
Subjt:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC

Query:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----
        MN+ NDN PWYFDIKQYIKCREYPY ASENDKRTIRRLA NFFLSGEVLYKRNHDM+LLRCVD EEAKQIM +IHEGIC THAN H+MARQIL S     
Subjt:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----

Query:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP
                                 A SPLH+LSAPW FSLWGMDVIGPIDPKASNGH F LV IDYFTKWIE  S+C+VTRGVVLKFIKKELIC +GLP
Subjt:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP

Query:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP
        +GIITDN KNLNNKMMDEL E+FKINHRNSTPYRP
Subjt:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP

A0A5A7UQ60 Ribonuclease H2.2e-14275.82Show/hide
Query:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC
        MGLQ A DMS+KKLKVLGDSMLVIHQVKEEW+TRDAKLVP SQY+ KLSQNFEKI FDHV RE+N+MADALA L VMF+LNLE EL+PIQIT RD  AYC
Subjt:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC

Query:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----
        MN+ NDN PWYFDIKQYIKCREYPY ASENDKR IRRL  NFFLSGEVLYKRNHDM+LLRCVD EEAKQIMT+IHEGICGTHAN H+MARQIL S     
Subjt:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----

Query:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP
                                 A SPLH+ SA W FSLWGMDVIG IDPKASNGH FILV IDYFTKWIE  SYC+VTRGVVLKFIKKELIC +GLP
Subjt:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP

Query:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP
        +GIIT+N KNLNN+MMDELYE+FKINHRN TPYRP
Subjt:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP

A0A5D3DMD2 Ribonuclease H3.9e-14476.72Show/hide
Query:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC
        MGLQ A DMS+KKLKVLGDSMLVIHQVKEEW+TRDAKLVP SQY+ KLSQNFEKISFDHV REDNRMADALA L VMF+LNLE EL+PIQIT RD  AYC
Subjt:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYC

Query:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----
        MN+ NDN PWYFDIKQYIKCREYPY ASENDKR IRRL  NFFLSGEVLYKRNHDM+LLRCVD EEAKQIMT+IHEGICGTHAN H+MARQIL S     
Subjt:  MNIENDNNPWYFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILIS-----

Query:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP
                                 A SPLH+ SA W FSLWGMDVIG IDPKASNGH FILV IDYFTKWIE  SYC+VTRGVVLKFIKKELIC +GLP
Subjt:  -------------------------ATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLP

Query:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP
        +GIIT+N KNLNN+MMDELYE+FKINHRN TPYRP
Subjt:  KGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP

SwissProt top hitse value%identityAlignment
P03360 Gag-Pol polyprotein (Fragment)7.7e-0431.71Show/hide
Query:  ASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLPKGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP
        A  G+ ++LV +D F+ W+EA      T  VV+K +  ++I   GLP  I +DN      K+  +L E   ++ +    YRP
Subjt:  ASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLPKGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP

Q4R6I1 Gypsy retrotransposon integrase-like protein 18.7e-0824.53Show/hide
Query:  IKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDV--EEAKQIMTEIHEGICGTH----------------------------A
        I  Y +  EY      +++  IRR A  F    + L+    D    R V V  EE K+++ E HE   G H                            A
Subjt:  IKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDV--EEAKQIMTEIHEGICGTH----------------------------A

Query:  NEHIMARQILISATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLPKGIITDNVKNLNN
         +H    +  +      H+L     +SL  +D++GP    ++  H + ++  D FTKW+     C V+   V K I   +   +G P+ II D       
Subjt:  NEHIMARQILISATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLPKGIITDNVKNLNN

Query:  KMMDELYEKFKI
        ++  ELY  F I
Subjt:  KMMDELYEKFKI

Q5RBK0 Gypsy retrotransposon integrase-like protein 13.0e-0825.47Show/hide
Query:  IKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDV--EEAKQIMTEIHEGICGTH----------------------------A
        I  Y +  EY      +++R IRR A  F    + L+    D    R V V  EE K+++ E HE   G H                            A
Subjt:  IKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDV--EEAKQIMTEIHEGICGTH----------------------------A

Query:  NEHIMARQILISATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLPKGIITDNVKNLNN
         +H    +  +      H+L     +SL  +D++GP    ++  H + ++  D FTKWI     C V+   V K I   +   +G P+ II D       
Subjt:  NEHIMARQILISATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLPKGIITDNVKNLNN

Query:  KMMDELYEKFKI
        ++  ELY  F I
Subjt:  KMMDELYEKFKI

Q66H30 Gypsy retrotransposon integrase-like protein 13.3e-0724.53Show/hide
Query:  IKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDV--EEAKQIMTEIHEGICGTH----------------------------A
        I  Y +  EY      +++  IRR A  F    + L+    D    R V V  EE K+++ E HE   G H                            A
Subjt:  IKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDV--EEAKQIMTEIHEGICGTH----------------------------A

Query:  NEH--IMARQILISATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLPKGIITDNVKNL
         +H  +    ++++    L V+  PW  S+  +D++GP    +S  H + ++  D FTKW+     C V+   + K I   +   +G P+ II D     
Subjt:  NEH--IMARQILISATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLPKGIITDNVKNL

Query:  NNKMMDELYEKF
         +++  ELY  F
Subjt:  NNKMMDELYEKF

Q9NXP7 Gypsy retrotransposon integrase-like protein 18.7e-0825Show/hide
Query:  IKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDV--EEAKQIMTEIHEGICGTH----------------------------A
        I  Y +  EY      +++  IRR A  F    + L+    D    R V V  EE K+++ E HE   G H                            A
Subjt:  IKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDV--EEAKQIMTEIHEGICGTH----------------------------A

Query:  NEHIMARQILISATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLPKGIITDNVKNLNN
         +H    +  +      H+L     +SL  +D++GP    ++  H + ++  D FTKWI     C V+   V K I   +   +G P+ II D       
Subjt:  NEHIMARQILISATSPLHVLSAPWSFSLWGMDVIGPIDPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLPKGIITDNVKNLNN

Query:  KMMDELYEKFKI
        ++  ELY  F I
Subjt:  KMMDELYEKFKI

Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein6.0e-0437.97Show/hide
Query:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRD---AKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTV
        +GL+ AI+   K +KV GDS LV  Q+K +WK      AKL   ++ +     +FE     HV R  N  AD  A L V
Subjt:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRD---AKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTV

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-0738.89Show/hide
Query:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALA
        +GL++A+D   K + VLGDSMLV  QV+  WKT   K+    +   +L  +F+     H+ RE N  AD  A
Subjt:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALA

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-0738.89Show/hide
Query:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALA
        +GL++A+D   K + VLGDSMLV  QV+  WKT   K+    +   +L  +F+     H+ RE N  AD  A
Subjt:  MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACTTCAAGCAGCAATCGACATGAGTGTTAAAAAGTTGAAAGTTTTGGGTGACTCAATGCTAGTAATACATCAAGTCAAGGAAGAATGGAAAACAAGAGATGCTAA
ATTGGTGCCTAACAGTCAATACATTGCAAAATTATCTCAAAATTTTGAGAAAATTTCATTTGACCATGTTCATAGGGAAGACAATCGAATGGCAGATGCATTAGCCATCC
TGACAGTCATGTTTAATCTTAACCTTGAGTGTGAACTTTATCCAATCCAAATTACAAATCGAGATGCGTCGGCATATTGCATGAATATTGAAAATGATAATAACCCATGG
TATTTTGACATCAAGCAATACATAAAGTGTAGAGAATATCCATATGGAGCTTCAGAGAATGACAAACGCACAATAAGAAGGTTGGCCACAAACTTTTTCTTAAGCGGTGA
AGTTCTTTATAAAAGAAACCATGATATGATACTCCTTCGATGTGTTGATGTGGAAGAAGCAAAACAAATTATGACAGAAATTCATGAAGGAATATGTGGAACACATGCTA
ACGAACATATTATGGCTAGACAAATACTTATATCTGCAACATCTCCATTGCATGTCTTGTCAGCACCATGGTCGTTTTCTTTATGGGGAATGGATGTTATTGGACCCATT
GATCCTAAAGCCTCAAATGGTCATCATTTTATTCTTGTGCCCATTGATTACTTCACTAAATGGATAGAGGCGACATCTTACTGCAGTGTTACAAGAGGAGTGGTGCTCAA
GTTTATCAAGAAAGAGTTGATCTGTTGTCATGGTTTACCGAAGGGTATTATTACAGATAATGTCAAGAACCTTAATAACAAAATGATGGACGAACTTTATGAGAAATTCA
AGATCAATCACAGAAATTCGACTCCATATCGCCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGACTTCAAGCAGCAATCGACATGAGTGTTAAAAAGTTGAAAGTTTTGGGTGACTCAATGCTAGTAATACATCAAGTCAAGGAAGAATGGAAAACAAGAGATGCTAA
ATTGGTGCCTAACAGTCAATACATTGCAAAATTATCTCAAAATTTTGAGAAAATTTCATTTGACCATGTTCATAGGGAAGACAATCGAATGGCAGATGCATTAGCCATCC
TGACAGTCATGTTTAATCTTAACCTTGAGTGTGAACTTTATCCAATCCAAATTACAAATCGAGATGCGTCGGCATATTGCATGAATATTGAAAATGATAATAACCCATGG
TATTTTGACATCAAGCAATACATAAAGTGTAGAGAATATCCATATGGAGCTTCAGAGAATGACAAACGCACAATAAGAAGGTTGGCCACAAACTTTTTCTTAAGCGGTGA
AGTTCTTTATAAAAGAAACCATGATATGATACTCCTTCGATGTGTTGATGTGGAAGAAGCAAAACAAATTATGACAGAAATTCATGAAGGAATATGTGGAACACATGCTA
ACGAACATATTATGGCTAGACAAATACTTATATCTGCAACATCTCCATTGCATGTCTTGTCAGCACCATGGTCGTTTTCTTTATGGGGAATGGATGTTATTGGACCCATT
GATCCTAAAGCCTCAAATGGTCATCATTTTATTCTTGTGCCCATTGATTACTTCACTAAATGGATAGAGGCGACATCTTACTGCAGTGTTACAAGAGGAGTGGTGCTCAA
GTTTATCAAGAAAGAGTTGATCTGTTGTCATGGTTTACCGAAGGGTATTATTACAGATAATGTCAAGAACCTTAATAACAAAATGATGGACGAACTTTATGAGAAATTCA
AGATCAATCACAGAAATTCGACTCCATATCGCCCCTAA
Protein sequenceShow/hide protein sequence
MGLQAAIDMSVKKLKVLGDSMLVIHQVKEEWKTRDAKLVPNSQYIAKLSQNFEKISFDHVHREDNRMADALAILTVMFNLNLECELYPIQITNRDASAYCMNIENDNNPW
YFDIKQYIKCREYPYGASENDKRTIRRLATNFFLSGEVLYKRNHDMILLRCVDVEEAKQIMTEIHEGICGTHANEHIMARQILISATSPLHVLSAPWSFSLWGMDVIGPI
DPKASNGHHFILVPIDYFTKWIEATSYCSVTRGVVLKFIKKELICCHGLPKGIITDNVKNLNNKMMDELYEKFKINHRNSTPYRP