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CSPI05G13090 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G13090
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibosomal protein S1
Genome locationChr5:12606854..12607368
RNA-Seq ExpressionCSPI05G13090
SyntenyCSPI05G13090
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AEN56125.1 ribosomal protein S1 [Cucumis melo subsp. melo]3.2e-6478.95Show/hide
Query:  MFLVDAGP-RTPIICMQDEPTEVPINRVARFETHSAVGSL-------------------DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFR
        MFLVDAGP  TPIICMQDEPT VPINR AR ETH AVGSL                   DLVAGESL+KERAAARLNDYLVGSTDVVAGEPLFLLPRRFR
Subjt:  MFLVDAGP-RTPIICMQDEPTEVPINRVARFETHSAVGSL-------------------DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFR

Query:  QNRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIIL
        QNRAWMELNKIWQ NQKVKG IIEKVKGGYSVAIAGFITF P C PLIRQRISNDRF+I+SI+PKRTNI++
Subjt:  QNRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIIL

XP_022974554.1 uncharacterized protein LOC111473236 [Cucurbita maxima]1.8e-5976.02Show/hide
Query:  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSL-------------------DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFRQ
        MFLVDAGP TP ICMQDEPT VPINR  RFE  + VGSL                   DLVAGESL+KERAAAR ND LVGSTDVVAGEPLFLLPRRFRQ
Subjt:  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSL-------------------DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFRQ

Query:  NRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIILW
        NRAWMELNKIWQTN KVKGFIIEKVKGGYSVAIAGFITF P  RPLI QRISN+RFTI+SINPKRTNI+++
Subjt:  NRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIILW

YP_004849347.1 ribosomal protein S1 [Cucumis sativus]1.1e-7285.38Show/hide
Query:  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSL-------------------DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFRQ
        MFLVDAGP TPIICMQDEPT VPINR ARFETHSAVGSL                   DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFRQ
Subjt:  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSL-------------------DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFRQ

Query:  NRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIILW
        NRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITF P  RPLIRQRISNDRFTIKSINPKRTNIILW
Subjt:  NRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIILW

YP_009706796.1 ribosomal protein S1 [Ilex pubescens]8.9e-5975.44Show/hide
Query:  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSL-------------------DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFRQ
        MFLVDAGP TP ICMQDEPT VPINR  RFE  + VGSL                   DLVAGESL+KERAAAR ND LVGSTDVVAGEPL LLPRRFRQ
Subjt:  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSL-------------------DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFRQ

Query:  NRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIILW
        NRAWMELNKIW+TN KVKGFIIEKVKGGYSVAIAGFITF P  RPLI QRISNDRFTI+SINPKRTNI+++
Subjt:  NRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIILW

YP_010021236.1 ribosomal protein S1 [Malania oleifera]5.6e-6183.55Show/hide
Query:  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFRQNRAWMELNKIWQTNQKVKG
        MFLVDAGP TP ICMQDEPT VPINR  RFE  + VGSLDLVAGESL+KERAAAR ND LVGSTDV+AGEPL LLPRRFRQNRAWMELNKIW+TN KVKG
Subjt:  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFRQNRAWMELNKIWQTNQKVKG

Query:  FIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIILW
        FIIEKVKGGYSVAIAGFITF P  RPLI QRISNDRFTI+SINPKRT I+++
Subjt:  FIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIILW

TrEMBL top hitse value%identityAlignment
A0A3S9JIJ3 Ribosomal protein S11.5e-6478.95Show/hide
Query:  MFLVDAGP-RTPIICMQDEPTEVPINRVARFETHSAVGSL-------------------DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFR
        MFLVDAGP  TPIICMQDEPT VPINR AR ETH AVGSL                   DLVAGESL+KERAAARLNDYLVGSTDVVAGEPLFLLPRRFR
Subjt:  MFLVDAGP-RTPIICMQDEPTEVPINRVARFETHSAVGSL-------------------DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFR

Query:  QNRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIIL
        QNRAWMELNKIWQ NQKVKG IIEKVKGGYSVAIAGFITF P C PLIRQRISNDRF+I+SI+PKRTNI++
Subjt:  QNRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIIL

A0A5A7V9I0 Ribosomal protein S1 (Mitochondrion)1.5e-6478.95Show/hide
Query:  MFLVDAGP-RTPIICMQDEPTEVPINRVARFETHSAVGSL-------------------DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFR
        MFLVDAGP  TPIICMQDEPT VPINR AR ETH AVGSL                   DLVAGESL+KERAAARLNDYLVGSTDVVAGEPLFLLPRRFR
Subjt:  MFLVDAGP-RTPIICMQDEPTEVPINRVARFETHSAVGSL-------------------DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFR

Query:  QNRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIIL
        QNRAWMELNKIWQ NQKVKG IIEKVKGGYSVAIAGFITF P C PLIRQRISNDRF+I+SI+PKRTNI++
Subjt:  QNRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIIL

A0A7L8ZV69 Ribosomal protein S12.7e-6183.55Show/hide
Query:  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFRQNRAWMELNKIWQTNQKVKG
        MFLVDAGP TP ICMQDEPT VPINR  RFE  + VGSLDLVAGESL+KERAAAR ND LVGSTDV+AGEPL LLPRRFRQNRAWMELNKIW+TN KVKG
Subjt:  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFRQNRAWMELNKIWQTNQKVKG

Query:  FIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIILW
        FIIEKVKGGYSVAIAGFITF P  RPLI QRISNDRFTI+SINPKRT I+++
Subjt:  FIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIILW

G3EIZ9 Ribosomal protein S15.3e-7385.38Show/hide
Query:  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSL-------------------DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFRQ
        MFLVDAGP TPIICMQDEPT VPINR ARFETHSAVGSL                   DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFRQ
Subjt:  MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSL-------------------DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFRQ

Query:  NRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIILW
        NRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITF P  RPLIRQRISNDRFTIKSINPKRTNIILW
Subjt:  NRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIILW

G3EU09 Ribosomal protein S11.5e-6478.95Show/hide
Query:  MFLVDAGP-RTPIICMQDEPTEVPINRVARFETHSAVGSL-------------------DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFR
        MFLVDAGP  TPIICMQDEPT VPINR AR ETH AVGSL                   DLVAGESL+KERAAARLNDYLVGSTDVVAGEPLFLLPRRFR
Subjt:  MFLVDAGP-RTPIICMQDEPTEVPINRVARFETHSAVGSL-------------------DLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFR

Query:  QNRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIIL
        QNRAWMELNKIWQ NQKVKG IIEKVKGGYSVAIAGFITF P C PLIRQRISNDRF+I+SI+PKRTNI++
Subjt:  QNRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIIL

SwissProt top hitse value%identityAlignment
P26863 Ribosomal protein S1, mitochondrial1.8e-1739.62Show/hide
Query:  LVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKERAAARLNDYLVGSTDV-VAGEPLFLLPR----RFRQNRAWMELNKIWQTNQK
        LVD G +TPIIC Q E   VPI + ARF                               G  DV V GEP  LLP+    + ++   W+EL KIW+++Q 
Subjt:  LVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKERAAARLNDYLVGSTDV-VAGEPLFLLPR----RFRQNRAWMELNKIWQTNQK

Query:  -VKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQR---ISNDR-FTIKSINPKRTNIIL
         VKGFI+  VKGGY+VAIAG+I F P  + L+R R    S  R F+I ++ PK +NI++
Subjt:  -VKGFIIEKVKGGYSVAIAGFITFHPVCRPLIRQR---ISNDR-FTIKSINPKRTNIIL

Q6NDP1 30S ribosomal protein S13.8e-0432.91Show/hide
Query:  RQNRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHP----VCRPL--IRQRISNDR-FTIKSINPKRTNIIL
        R+  +W +L K +Q N+KV G I  +VKGG++V + G + F P      RP+  +   ++N + F I  ++ +R NI++
Subjt:  RQNRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHP----VCRPL--IRQRISNDR-FTIKSINPKRTNIIL

Q83E09 30S ribosomal protein S16.5e-0431.65Show/hide
Query:  RQNRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHP----VCRPLIRQRISNDR---FTIKSINPKRTNIIL
        R+ +AW EL K ++  + VKG IIE+VKGG++V +     F P      +P+       D+   F I  ++ +R N+++
Subjt:  RQNRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFHP----VCRPLIRQRISNDR---FTIKSINPKRTNIIL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTGGTGGATGCAGGACCTAGGACCCCCATCATTTGTATGCAAGATGAGCCTACAGAAGTTCCAATCAATCGAGTCGCCAGGTTTGAGACCCACTCCGCGGTGGG
ATCCCTGGATCTAGTGGCCGGTGAATCACTTCTCAAAGAGCGAGCTGCCGCCAGGTTGAATGATTATTTGGTGGGATCCACAGATGTAGTGGCTGGTGAACCCCTTTTTC
TTCTTCCACGAAGATTCAGACAAAACCGAGCTTGGATGGAACTGAACAAGATTTGGCAAACGAATCAAAAAGTCAAAGGCTTTATTATTGAGAAAGTCAAAGGAGGTTAT
TCAGTAGCCATCGCGGGTTTCATTACTTTTCATCCAGTCTGTCGTCCTCTCATAAGGCAAAGGATATCGAATGATCGATTCACCATTAAGAGCATTAACCCCAAAAGAAC
GAATATTATATTGTGGTGA
mRNA sequenceShow/hide mRNA sequence
TTTTCTTACGTAGTGTAAACGCCTTACAATCTTCCGTTTTACGCTTTAGGGAAGAAATGTTCTTGGTGGATGCAGGACCTAGGACCCCCATCATTTGTATGCAAGATGAG
CCTACAGAAGTTCCAATCAATCGAGTCGCCAGGTTTGAGACCCACTCCGCGGTGGGATCCCTGGATCTAGTGGCCGGTGAATCACTTCTCAAAGAGCGAGCTGCCGCCAG
GTTGAATGATTATTTGGTGGGATCCACAGATGTAGTGGCTGGTGAACCCCTTTTTCTTCTTCCACGAAGATTCAGACAAAACCGAGCTTGGATGGAACTGAACAAGATTT
GGCAAACGAATCAAAAAGTCAAAGGCTTTATTATTGAGAAAGTCAAAGGAGGTTATTCAGTAGCCATCGCGGGTTTCATTACTTTTCATCCAGTCTGTCGTCCTCTCATA
AGGCAAAGGATATCGAATGATCGATTCACCATTAAGAGCATTAACCCCAAAAGAACGAATATTATATTGTGGTGA
Protein sequenceShow/hide protein sequence
MFLVDAGPRTPIICMQDEPTEVPINRVARFETHSAVGSLDLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFRQNRAWMELNKIWQTNQKVKGFIIEKVKGGY
SVAIAGFITFHPVCRPLIRQRISNDRFTIKSINPKRTNIILW