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CSPI05G13190 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G13190
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon protein
Genome locationChr5:12764017..12764361
RNA-Seq ExpressionCSPI05G13190
SyntenyCSPI05G13190
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-3666.67Show/hide
Query:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF
        M+  EL +++NAF+ +QRQ+++  +   ND +RI  +P  TRHRIRQ+AYF MIH SDLVC+QST MDRRC+AILCHLLRT AGL STEV+DVEEMVA+F
Subjt:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF

Query:  LHVLAHDVKNREIQ
        LH+LAHDVKNR IQ
Subjt:  LHVLAHDVKNREIQ
KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-3666.67Show/hide
Query:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF
        M+  EL +++NAF+ +QRQ+++  +   ND +RI  +P  TRHRIRQ+AYF MIH SDLVC+QST MDRRC+AILCHLLRT AGL STEV+DVEEMVA+F
Subjt:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF

Query:  LHVLAHDVKNREIQ
        LH+LAHDVKNR IQ
Subjt:  LHVLAHDVKNREIQ
KAA0065286.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-3666.67Show/hide
Query:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF
        M+  EL +++NAF+ +QRQ+++  +   ND +RI  +P  TRHRIRQ+AYF MIH SDLVC+QST MDRRC+AILCHLLRT AGL STEV+DVEEMVA+F
Subjt:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF

Query:  LHVLAHDVKNREIQ
        LH+LAHDVKNR IQ
Subjt:  LHVLAHDVKNREIQ
KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]9.4e-3767.54Show/hide
Query:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF
        M+  EL +++NAF+ +QRQ+++  +   ND +RI  +P  TRHRIRQ+AYF MIHESDLVC+QST MDRRC+AILCHLLRT AGL STEV+DVEEMVA+F
Subjt:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF

Query:  LHVLAHDVKNREIQ
        LH+LAHDVKNR IQ
Subjt:  LHVLAHDVKNREIQ
KAA0068124.1 retrotransposon protein [Cucumis melo var. makuwa]9.4e-3766.67Show/hide
Query:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF
        M+  EL +++NAF+ +QRQ+++  +   ND +RI  +P  TRHRIRQ+AYFHMIH SDL+C+QST MDRRC+AILCHLLRT AGL STEV+DVEEMVA+F
Subjt:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF

Query:  LHVLAHDVKNREIQ
        LH+LAHDVKNR IQ
Subjt:  LHVLAHDVKNREIQ
TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein3.0e-3666.67Show/hide
Query:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF
        M+  EL +++NAF+ +QRQ+++  +   ND +RI  +P  TRHRIRQ+AYF MIH SDLVC+QST MDRRC+AILCHLLRT AGL STEV+DVEEMVA+F
Subjt:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF

Query:  LHVLAHDVKNREIQ
        LH+LAHDVKNR IQ
Subjt:  LHVLAHDVKNREIQ
A0A5A7TXW1 Retrotransposon protein3.0e-3666.67Show/hide
Query:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF
        M+  EL +++NAF+ +QRQ+++  +   ND +RI  +P  TRHRIRQ+AYF MIH SDLVC+QST MDRRC+AILCHLLRT AGL STEV+DVEEMVA+F
Subjt:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF

Query:  LHVLAHDVKNREIQ
        LH+LAHDVKNR IQ
Subjt:  LHVLAHDVKNREIQ
A0A5A7VHB0 Retrotransposon protein4.6e-3767.54Show/hide
Query:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF
        M+  EL +++NAF+ +QRQ+++  +   ND +RI  +P  TRHRIRQ+AYF MIHESDLVC+QST MDRRC+AILCHLLRT AGL STEV+DVEEMVA+F
Subjt:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF

Query:  LHVLAHDVKNREIQ
        LH+LAHDVKNR IQ
Subjt:  LHVLAHDVKNREIQ
A0A5A7VL29 Retrotransposon protein4.6e-3766.67Show/hide
Query:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF
        M+  EL +++NAF+ +QRQ+++  +   ND +RI  +P  TRHRIRQ+AYFHMIH SDL+C+QST MDRRC+AILCHLLRT AGL STEV+DVEEMVA+F
Subjt:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF

Query:  LHVLAHDVKNREIQ
        LH+LAHDVKNR IQ
Subjt:  LHVLAHDVKNREIQ
A0A5D3BDX0 Retrotransposon protein3.0e-3666.67Show/hide
Query:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF
        M+  EL +++NAF+ +QRQ+++  +   ND +RI  +P  TRHRIRQ+AYF MIH SDLVC+QST MDRRC+AILCHLLRT AGL STEV+DVEEMVA+F
Subjt:  MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIF

Query:  LHVLAHDVKNREIQ
        LH+LAHDVKNR IQ
Subjt:  LHVLAHDVKNREIQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein5.0e-0431.67Show/hide
Query:  IHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIFLHVLAHDVKNREI
        + +    C Q   M   C+  LC++L+T   L+ T  I +EE VA+FL +  H+   R++
Subjt:  IHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIFLHVLAHDVKNREI
AT5G28730.1 unknown protein3.9e-0433.87Show/hide
Query:  HMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIFLHVLAHDVKNREI
        H I+ +++ CQ    M    +  LC +L    GL+S+  I ++E VAIFL + A +   R+I
Subjt:  HMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIFLHVLAHDVKNREI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCCACAGAACTGACGAATCTTTTGAACGCCTTTCTACTGGCCCAACGTCAAATGATAATGACGTTTGACACATTCTTCAATGATAGGAGAAGGATTCCCCAAGT
ACCGTGTAACACAAGGCATAGGATTAGACAGATTGCGTATTTTCATATGATACACGAGTCTGACCTTGTATGTCAGCAAAGTACGTGCATGGATAGACGTTGTTACGCAA
TTCTTTGCCATCTCCTACGGACAACGGCTGGATTAGAATCGACTGAAGTTATCGACGTCGAAGAGATGGTTGCTATCTTCCTACACGTGCTTGCGCATGATGTTAAGAAC
CGCGAGATACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCCCACAGAACTGACGAATCTTTTGAACGCCTTTCTACTGGCCCAACGTCAAATGATAATGACGTTTGACACATTCTTCAATGATAGGAGAAGGATTCCCCAAGT
ACCGTGTAACACAAGGCATAGGATTAGACAGATTGCGTATTTTCATATGATACACGAGTCTGACCTTGTATGTCAGCAAAGTACGTGCATGGATAGACGTTGTTACGCAA
TTCTTTGCCATCTCCTACGGACAACGGCTGGATTAGAATCGACTGAAGTTATCGACGTCGAAGAGATGGTTGCTATCTTCCTACACGTGCTTGCGCATGATGTTAAGAAC
CGCGAGATACAATGA
Protein sequenceShow/hide protein sequence
MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIFLHVLAHDVKN
REIQ