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CSPI05G13320 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G13320
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationChr5:12906861..12907382
RNA-Seq ExpressionCSPI05G13320
SyntenyCSPI05G13320
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0005622 - intracellular (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647279.1 hypothetical protein Csa_002929 [Cucumis sativus]2.1e-2767.06Show/hide
Query:  SFQVHQLDHVDHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREAT
        ++ +  +  +DHFP AM   DIDWGPCPF+ E SWLSTP F P VETWWTNNRVAGWP HG+MMKLKAL   FRSWNNN+  EAT
Subjt:  SFQVHQLDHVDHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREAT

KAE8648339.1 hypothetical protein Csa_023126 [Cucumis sativus]5.1e-50100Show/hide
Query:  VHQLDHVDHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREATKLPSLISQL
        VHQLDHVDHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREATKLPSLISQL
Subjt:  VHQLDHVDHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREATKLPSLISQL

RVW28221.1 hypothetical protein CK203_083720 [Vitis vinifera]3.2e-2036.81Show/hide
Query:  DHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWN---NNKHREATKLPSLISQLCQLDHIGNKTQLS
        DH P+ + T  + WGP PF+FEN WL  P F+     WW    V GW  H  M KLK +K   + WN       RE  K   ++S L ++D I  K  L+
Subjt:  DHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWN---NNKHREATKLPSLISQLCQLDHIGNKTQLS

Query:  AELLSTSRSLREQIEQLAAQEHIQWWQRCKLKCFTNGDENTRFF
         +L+S     R+++E L  +E +QW Q+ ++K    GD N++FF
Subjt:  AELLSTSRSLREQIEQLAAQEHIQWWQRCKLKCFTNGDENTRFF

TYK17996.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-5177.21Show/hide
Query:  MTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREATKLPSLISQLCQLDHIGNKTQLSAELLSTSRS
        MT GDID GPCPF+FENSWLSTPSF P VETWWTNNRVAGWPRHG+MMKLKAL+   RSW NN+HREATKLPSLISQL +LD+IGN+ QLS E LSTS  
Subjt:  MTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREATKLPSLISQLCQLDHIGNKTQLSAELLSTSRS

Query:  LREQIEQLAAQEHIQWWQRCKLKCFTNGDENTRFFS
        LREQIEQL AQEHIQW  R K K F  GDENT FF+
Subjt:  LREQIEQLAAQEHIQWWQRCKLKCFTNGDENTRFFS

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]1.1e-2336.09Show/hide
Query:  MDRLLVTDICAIKFGSFQVHQLDHV--DHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHR-
        +D  L+T+ C  K G     ++     DHFP+ +  G  +WG  PF+FEN WLS  +F+P +ETWW N  + GWP HG+MMKLK+LK + + W     R 
Subjt:  MDRLLVTDICAIKFGSFQVHQLDHV--DHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHR-

Query:  EATKLPSLISQLCQLDHIGNKTQLSAELLSTSRSLREQIEQLAAQEHIQWWQRCKLKCFTNGDENTRFF
          ++   L + +  LD +     ++ +        +E +  + A+E   W QRCK K    GDENT+FF
Subjt:  EATKLPSLISQLCQLDHIGNKTQLSAELLSTSRSLREQIEQLAAQEHIQWWQRCKLKCFTNGDENTRFF

TrEMBL top hitse value%identityAlignment
A0A0A0KDG4 Uncharacterized protein1.5e-2850Show/hide
Query:  SFQVHQLDHVDHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREATKLPSLISQLCQLDHI
        ++ +  +  +DHFP AM   DIDWGPCPF+ E SWLSTP F P VETWWTNNR                                        L +LD+I
Subjt:  SFQVHQLDHVDHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREATKLPSLISQLCQLDHI

Query:  GNKTQLSAELLSTSRSLREQIEQLAAQEHIQWWQRCKLKCFTNG
        GNKTQL  E LSTSRS REQIEQL  QEHIQW QRCKLK FT G
Subjt:  GNKTQLSAELLSTSRSLREQIEQLAAQEHIQWWQRCKLKCFTNG

A0A0A0KMS2 Uncharacterized protein6.9e-6199.08Show/hide
Query:  MDRLLVTDICAIKFGSFQVHQLDHVDHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREAT
        +DRLLVTDICAIKFGSFQVHQLDHVDHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREAT
Subjt:  MDRLLVTDICAIKFGSFQVHQLDHVDHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREAT

Query:  KLPSLISQL
        KLPSLISQL
Subjt:  KLPSLISQL

A0A438CYG1 Uncharacterized protein1.5e-2036.81Show/hide
Query:  DHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWN---NNKHREATKLPSLISQLCQLDHIGNKTQLS
        DH P+ + T  + WGP PF+FEN WL  P F+     WW    V GW  H  M KLK +K   + WN       RE  K   ++S L ++D I  K  L+
Subjt:  DHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWN---NNKHREATKLPSLISQLCQLDHIGNKTQLS

Query:  AELLSTSRSLREQIEQLAAQEHIQWWQRCKLKCFTNGDENTRFF
         +L+S     R+++E L  +E +QW Q+ ++K    GD N++FF
Subjt:  AELLSTSRSLREQIEQLAAQEHIQWWQRCKLKCFTNGDENTRFF

A0A5D3D3Q8 Reverse transcriptase7.6e-5277.21Show/hide
Query:  MTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREATKLPSLISQLCQLDHIGNKTQLSAELLSTSRS
        MT GDID GPCPF+FENSWLSTPSF P VETWWTNNRVAGWPRHG+MMKLKAL+   RSW NN+HREATKLPSLISQL +LD+IGN+ QLS E LSTS  
Subjt:  MTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREATKLPSLISQLCQLDHIGNKTQLSAELLSTSRS

Query:  LREQIEQLAAQEHIQWWQRCKLKCFTNGDENTRFFS
        LREQIEQL AQEHIQW  R K K F  GDENT FF+
Subjt:  LREQIEQLAAQEHIQWWQRCKLKCFTNGDENTRFFS

A0A6J1E2G6 uncharacterized protein LOC1110254055.1e-2436.09Show/hide
Query:  MDRLLVTDICAIKFGSFQVHQLDHV--DHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHR-
        +D  L+T+ C  K G     ++     DHFP+ +  G  +WG  PF+FEN WLS  +F+P +ETWW N  + GWP HG+MMKLK+LK + + W     R 
Subjt:  MDRLLVTDICAIKFGSFQVHQLDHV--DHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHR-

Query:  EATKLPSLISQLCQLDHIGNKTQLSAELLSTSRSLREQIEQLAAQEHIQWWQRCKLKCFTNGDENTRFF
          ++   L + +  LD +     ++ +        +E +  + A+E   W QRCK K    GDENT+FF
Subjt:  EATKLPSLISQLCQLDHIGNKTQLSAELLSTSRSLREQIEQLAAQEHIQWWQRCKLKCFTNGDENTRFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGTTTATTGGTTACTGACATTTGCGCTATTAAATTTGGATCCTTTCAGGTTCATCAATTAGATCATGTCGATCATTTTCCTCTTGCTATGACTACAGGTGATAT
TGATTGGGGTCCATGCCCTTTCAAATTCGAGAACTCCTGGCTCTCTACTCCATCCTTTCGGCCACCTGTGGAAACTTGGTGGACAAACAATAGGGTTGCTGGTTGGCCTA
GACATGGAATGATGATGAAGCTCAAAGCATTAAAATGTTCCTTTCGTTCATGGAATAACAATAAGCATAGAGAGGCTACTAAATTACCATCCCTTATCTCTCAGCTCTGC
CAGTTGGATCATATAGGCAACAAGACTCAACTTTCTGCAGAACTATTATCCACAAGTCGTTCATTGAGGGAACAAATTGAACAATTAGCTGCTCAGGAGCACATCCAATG
GTGGCAACGTTGTAAACTTAAATGCTTCACAAACGGGGATGAAAACACTCGTTTTTTTTCACCGTATTGTTGCTGCCCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCGTTTATTGGTTACTGACATTTGCGCTATTAAATTTGGATCCTTTCAGGTTCATCAATTAGATCATGTCGATCATTTTCCTCTTGCTATGACTACAGGTGATAT
TGATTGGGGTCCATGCCCTTTCAAATTCGAGAACTCCTGGCTCTCTACTCCATCCTTTCGGCCACCTGTGGAAACTTGGTGGACAAACAATAGGGTTGCTGGTTGGCCTA
GACATGGAATGATGATGAAGCTCAAAGCATTAAAATGTTCCTTTCGTTCATGGAATAACAATAAGCATAGAGAGGCTACTAAATTACCATCCCTTATCTCTCAGCTCTGC
CAGTTGGATCATATAGGCAACAAGACTCAACTTTCTGCAGAACTATTATCCACAAGTCGTTCATTGAGGGAACAAATTGAACAATTAGCTGCTCAGGAGCACATCCAATG
GTGGCAACGTTGTAAACTTAAATGCTTCACAAACGGGGATGAAAACACTCGTTTTTTTTCACCGTATTGTTGCTGCCCGTAA
Protein sequenceShow/hide protein sequence
MDRLLVTDICAIKFGSFQVHQLDHVDHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREATKLPSLISQLC
QLDHIGNKTQLSAELLSTSRSLREQIEQLAAQEHIQWWQRCKLKCFTNGDENTRFFSPYCCCP