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CSPI05G13400 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G13400
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 38-like
Genome locationChr5:13109762..13110508
RNA-Seq ExpressionCSPI05G13400
SyntenyCSPI05G13400
Gene Ontology termsGO:0006950 - response to stress (biological process)
GO:0009266 - response to temperature stimulus (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016973 - poly(A)+ mRNA export from nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0010494 - cytoplasmic stress granule (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066184.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]8.3e-1888.89Show/hide
Query:  VSNKKLQGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
        V NKKL+GAVFNLLCGDEEIM+MDKIQNHFRSEIIEVRDS++DIQ ALKAAGLV
Subjt:  VSNKKLQGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
XP_004150128.2 DEAD-box ATP-dependent RNA helicase 38 [Cucumis sativus]2.0e-1695.83Show/hide
Query:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
        +GAVFNLLCGDEEIM+MDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
Subjt:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
XP_008463114.1 PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Cucumis melo]5.0e-1589.58Show/hide
Query:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
        +GAVFNLLCGDEEIM+MDKIQNHFRSEIIEVRDS++DIQ ALKAAGLV
Subjt:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
XP_038876100.1 DEAD-box ATP-dependent RNA helicase 38-like [Benincasa hispida]1.4e-1283.33Show/hide
Query:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
        +GAVFNLLCGDEEIM M+KIQNHF SEIIEVRDS++DIQ ALK AGLV
Subjt:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
XP_038906287.1 DEAD-box ATP-dependent RNA helicase 38 [Benincasa hispida]8.9e-1281.25Show/hide
Query:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
        +GAVFNLLCGDEEI  MDKIQ HF SEIIEVRDS++DIQ ALK AGLV
Subjt:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
TrEMBL top hitse value%identityAlignment
A0A1S3B601 DEAD-box ATP-dependent RNA helicase 381.3e-1175Show/hide
Query:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
        +GAVFNLLCGD+EI  MDKIQ HF SE+IEVRDS++DIQ ALK+AGL+
Subjt:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
A0A1S4E419 DEAD-box ATP-dependent RNA helicase 38-like2.4e-1589.58Show/hide
Query:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
        +GAVFNLLCGDEEIM+MDKIQNHFRSEIIEVRDS++DIQ ALKAAGLV
Subjt:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
A0A5A7TRB4 DEAD-box ATP-dependent RNA helicase 381.3e-1175Show/hide
Query:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
        +GAVFNLLCGD+EI  MDKIQ HF SE+IEVRDS++DIQ ALK+AGL+
Subjt:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
A0A5A7VFU8 Transposon Ty3-G Gag-Pol polyprotein4.0e-1888.89Show/hide
Query:  VSNKKLQGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
        V NKKL+GAVFNLLCGDEEIM+MDKIQNHFRSEIIEVRDS++DIQ ALKAAGLV
Subjt:  VSNKKLQGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
A0A5D3DNK6 DEAD-box ATP-dependent RNA helicase 381.3e-1175Show/hide
Query:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
        +GAVFNLLCGD+EI  MDKIQ HF SE+IEVRDS++DIQ ALK+AGL+
Subjt:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV
SwissProt top hitse value%identityAlignment
Q10RI7 DEAD-box ATP-dependent RNA helicase 382.0e-0652Show/hide
Query:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRD--SEDDIQTALKAAGLV
        +GAVFNLLCG+ +  +M KI+ +F+  + EVR+  SE+D + ALK AGLV
Subjt:  QGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRD--SEDDIQTALKAAGLV
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGTCTCAAACAAGAAACTACAAGGAGCTGTGTTTAACTTGCTGTGTGGCGATGAGGAAATCATGATAATGGACAAAATTCAGAACCATTTTCGCTCTGAAATAAT
AGAGGTTCGAGACTCTGAAGACGACATTCAGACAGCCTTAAAAGCTGCCGGATTGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGTCTCAAACAAGAAACTACAAGGAGCTGTGTTTAACTTGCTGTGTGGCGATGAGGAAATCATGATAATGGACAAAATTCAGAACCATTTTCGCTCTGAAATAAT
AGAGGTTCGAGACTCTGAAGACGACATTCAGACAGCCTTAAAAGCTGCCGGATTGGTTTGATGTATAGAAATGAGTTTATCATAGTTGATTTCCATTGATGCCAACCACG
CACCAAAGGCGATAAACATGGAACAGTTGGATGAAAAAAAAAATGGATCGAATCAAAATCGAGGCTTAGTAGTTTTTTGTTTTGCTTTAAAGTTGAAAGGAAATTACATG
TGGTTGAGGTATTTAGTGTGTTTGAGTTTGTCAATTTCTGGCGTATGGTTAGACTGTTGTATATTGTGATGGTCACGGGAGAGCATCGAGTTAAATGTTAAATTTTAGAT
ATGTATCTTTATGGACCCTGAACTTTATATTTGTGCAATAAATTTCTAAACTTTTATTTTTGTATGCATTAAAGTACATTAAAAAAAATCAATCCA
Protein sequenceShow/hide protein sequence
MQVSNKKLQGAVFNLLCGDEEIMIMDKIQNHFRSEIIEVRDSEDDIQTALKAAGLV