; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G13410 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G13410
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionChloroplast stem-loop binding protein of 41 kDa a
Genome locationChr5:13114802..13115418
RNA-Seq ExpressionCSPI05G13410
SyntenyCSPI05G13410
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8721393.1 Chloroplast stem-loop binding protein of 41 kDa a [Hibiscus syriacus]2.2e-1842.14Show/hide
Query:  MSSVGIYKPADEPPHVEGNPVKADIGHFNV-----------------------------VHYDPKPVK----------------EPRAVHDILGSKGTRI
        +SS GIYKP DEPPH++G+ VKAD GH  V                              HY+PK V+                EPRA  DI+G +GT  
Subjt:  MSSVGIYKPADEPPHVEGNPVKADIGHFNV-----------------------------VHYDPKPVK----------------EPRAVHDILGSKGTRI

Query:  LPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAA
        LP+DLK RFEEY+K+  DK+ P KFE+DDKI ++LKV  A
Subjt:  LPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAA

KAG2697112.1 hypothetical protein I3760_07G090800 [Carya illinoinensis]1.4e-1738.79Show/hide
Query:  MSSVGIYKPADEPPHVEGNPVKADIGH------------------------------------------------------FNVVHYDPKPV--------
        +SS GIYKP +EPPHVEG+ VKAD GH                                                       N++HYDPK V        
Subjt:  MSSVGIYKPADEPPHVEGNPVKADIGH------------------------------------------------------FNVVHYDPKPV--------

Query:  --------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAA
                 EPRA  DILG + T  LPEDLK RF+EYV+IGRDK+   KFE+DDKI +SLKV  A
Subjt:  --------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAA

KAG6703637.1 hypothetical protein I3842_07G094300 [Carya illinoinensis]1.4e-1738.79Show/hide
Query:  MSSVGIYKPADEPPHVEGNPVKADIGH------------------------------------------------------FNVVHYDPKPV--------
        +SS GIYKP +EPPHVEG+ VKAD GH                                                       N++HYDPK V        
Subjt:  MSSVGIYKPADEPPHVEGNPVKADIGH------------------------------------------------------FNVVHYDPKPV--------

Query:  --------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAA
                 EPRA  DILG + T  LPEDLK RF+EYV+IGRDK+   KFE+DDKI +SLKV  A
Subjt:  --------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAA

OMO77710.1 hypothetical protein CCACVL1_14866 [Corchorus capsularis]3.3e-1433.18Show/hide
Query:  MSSVGIYKPADEPPHVEGNPVKADIGH-------------------------------------------------------------------------
        +SS GIYKP DEPPHVEG+ VKAD GH                                                                         
Subjt:  MSSVGIYKPADEPPHVEGNPVKADIGH-------------------------------------------------------------------------

Query:  --------FN-------------------------VVHYDPKPV----------------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPT
                FN                         +VHYDPK V                 EPRA  DILG +GT  LPEDLK RFEEYVKIGRDK+ P 
Subjt:  --------FN-------------------------VVHYDPKPV----------------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPT

Query:  KFELDDKIFKSLKVQAA
        KFELDDKI +SLKV  A
Subjt:  KFELDDKIFKSLKVQAA

XP_042990421.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic isoform X3 [Carya illinoinensis]1.4e-1738.79Show/hide
Query:  MSSVGIYKPADEPPHVEGNPVKADIGH------------------------------------------------------FNVVHYDPKPV--------
        +SS GIYKP +EPPHVEG+ VKAD GH                                                       N++HYDPK V        
Subjt:  MSSVGIYKPADEPPHVEGNPVKADIGH------------------------------------------------------FNVVHYDPKPV--------

Query:  --------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAA
                 EPRA  DILG + T  LPEDLK RF+EYV+IGRDK+   KFE+DDKI +SLKV  A
Subjt:  --------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAA

TrEMBL top hitse value%identityAlignment
A0A0A0KMQ8 Uncharacterized protein3.1e-4797.92Show/hide
Query:  MSSVGIYKPADEPPHVEGNPVKADIGHFNVVHYDPKPVKEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAAT
        MSSVGIYKPADEPPHVEGNPVKAD GHFNVVHYDPK VKEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAAT
Subjt:  MSSVGIYKPADEPPHVEGNPVKADIGHFNVVHYDPKPVKEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAAT

A0A1R3I556 Epimerase domain-containing protein1.6e-1433.18Show/hide
Query:  MSSVGIYKPADEPPHVEGNPVKADIGH-------------------------------------------------------------------------
        +SS GIYKP DEPPHVEG+ VKAD GH                                                                         
Subjt:  MSSVGIYKPADEPPHVEGNPVKADIGH-------------------------------------------------------------------------

Query:  --------FN-------------------------VVHYDPKPV----------------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPT
                FN                         +VHYDPK V                 EPRA  DILG +GT  LPEDLK RFEEYVKIGRDK+ P 
Subjt:  --------FN-------------------------VVHYDPKPV----------------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPT

Query:  KFELDDKIFKSLKVQAA
        KFELDDKI +SLKV  A
Subjt:  KFELDDKIFKSLKVQAA

A0A2I0JW64 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic3.5e-1460Show/hide
Query:  NVVHYDPKPV----------------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKV
        N+VHYDPK +                 EPRA  DILG KGT  LPEDLK R+EEYVKIGRDK+ P KFELDDKI +SLKV
Subjt:  NVVHYDPKPV----------------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKV

A0A6A3BX98 Chloroplast stem-loop binding protein of 41 kDa a1.1e-1842.14Show/hide
Query:  MSSVGIYKPADEPPHVEGNPVKADIGHFNV-----------------------------VHYDPKPVK----------------EPRAVHDILGSKGTRI
        +SS GIYKP DEPPH++G+ VKAD GH  V                              HY+PK V+                EPRA  DI+G +GT  
Subjt:  MSSVGIYKPADEPPHVEGNPVKADIGHFNV-----------------------------VHYDPKPVK----------------EPRAVHDILGSKGTRI

Query:  LPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAA
        LP+DLK RFEEY+K+  DK+ P KFE+DDKI ++LKV  A
Subjt:  LPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAA

A0A6N2MRN4 Uncharacterized protein9.2e-1535.71Show/hide
Query:  MSSVGIYKPADEPPHVEGNPVKADIGH----------------------------------------------FN-------------------------
        +SS GIYKP DEPPHVEG+ VKAD GH                                              FN                         
Subjt:  MSSVGIYKPADEPPHVEGNPVKADIGH----------------------------------------------FN-------------------------

Query:  VVHYDPKPV----------------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAA
        ++HYDPK V                 EPRA  +IL  +GT  LPEDLK RF+EYVKI RDK+ P +FE+DDKI +SLKV  A
Subjt:  VVHYDPKPV----------------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAA

SwissProt top hitse value%identityAlignment
Q9LYA9 Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic3.7e-1351.22Show/hide
Query:  VVHYDPKPV----------------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAA
        +VHYDPK +                 EPRA  D+LG +    LPEDLK RFEEYVKIGRDK+   KFELDDKI ++LK   A
Subjt:  VVHYDPKPV----------------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAA

Q9LYA9 Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic1.9e-0460.61Show/hide
Query:  MSSVGIYKPADEPPHVEGNPVKADIGHFNVVHY
        +SS GIYK  ++PPHVEG+ VKAD GH  V  Y
Subjt:  MSSVGIYKPADEPPHVEGNPVKADIGHFNVVHY

Arabidopsis top hitse value%identityAlignment
AT3G63140.1 chloroplast stem-loop binding protein of 41 kDa2.7e-1451.22Show/hide
Query:  VVHYDPKPV----------------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAA
        +VHYDPK +                 EPRA  D+LG +    LPEDLK RFEEYVKIGRDK+   KFELDDKI ++LK   A
Subjt:  VVHYDPKPV----------------KEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAA

AT3G63140.1 chloroplast stem-loop binding protein of 41 kDa1.3e-0560.61Show/hide
Query:  MSSVGIYKPADEPPHVEGNPVKADIGHFNVVHY
        +SS GIYK  ++PPHVEG+ VKAD GH  V  Y
Subjt:  MSSVGIYKPADEPPHVEGNPVKADIGHFNVVHY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGTGTTGGAATTTATAAGCCAGCTGATGAACCTCCCCATGTTGAAGGGAATCCTGTTAAAGCTGATATTGGTCATTTTAACGTGGTGCATTATGATCCAAAACC
AGTTAAGGAACCAAGAGCAGTACATGATATTTTAGGGTCGAAAGGTACCAGAATTCTTCCTGAAGATTTGAAAGGGCGATTTGAAGAGTATGTGAAGATTGGTAGAGACA
AGAGACTGCCTACTAAGTTTGAACTAGATGATAAGATATTCAAGTCCTTAAAAGTTCAAGCAGCTACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAGTGTTGGAATTTATAAGCCAGCTGATGAACCTCCCCATGTTGAAGGGAATCCTGTTAAAGCTGATATTGGTCATTTTAACGTGGTGCATTATGATCCAAAACC
AGTTAAGGAACCAAGAGCAGTACATGATATTTTAGGGTCGAAAGGTACCAGAATTCTTCCTGAAGATTTGAAAGGGCGATTTGAAGAGTATGTGAAGATTGGTAGAGACA
AGAGACTGCCTACTAAGTTTGAACTAGATGATAAGATATTCAAGTCCTTAAAAGTTCAAGCAGCTACTTGA
Protein sequenceShow/hide protein sequence
MSSVGIYKPADEPPHVEGNPVKADIGHFNVVHYDPKPVKEPRAVHDILGSKGTRILPEDLKGRFEEYVKIGRDKRLPTKFELDDKIFKSLKVQAAT