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CSPI05G13690 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G13690
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr5:13628408..13628770
RNA-Seq ExpressionCSPI05G13690
SyntenyCSPI05G13690
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059756.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.6e-4179.65Show/hide
Query:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKS
        MLDSIG EYK SV RFEI KDSK+VL G +INGLF IKEVSMN   LIVSND LTEG+LWH RLS ISGKGLK+LSEQ I+PKGVAE LSFCE CVVGKS
Subjt:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKS

Query:  IRQSIQKADHNTK
         RQS QKADHNTK
Subjt:  IRQSIQKADHNTK

XP_031741722.1 uncharacterized protein LOC116403917 [Cucumis sativus]2.5e-5696.67Show/hide
Query:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKS
        MLDSIG EYKDSVGRFEILKDSKVVLA LRINGLFLIKEVSMNPT LIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCE CVVGKS
Subjt:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKS

Query:  IRQSIQKADHNTKITTPKLS
        IRQSIQKADHNTKITTPKLS
Subjt:  IRQSIQKADHNTKITTPKLS

XP_038882336.1 uncharacterized mitochondrial protein AtMg00300-like [Benincasa hispida]1.3e-2049.5Show/hide
Query:  GRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKSIRQSIQKADHNTK
        G  E+LK SK +  G++ING+++++ V    + L+V++   TEG LWHKRLSHIS K ++ L+ Q ILPKG+  +LSFC+ CV+GK+ RQS  KA H TK
Subjt:  GRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKSIRQSIQKADHNTK

Query:  I
        +
Subjt:  I

XP_038885858.1 uncharacterized mitochondrial protein AtMg00300-like [Benincasa hispida]7.9e-2654.87Show/hide
Query:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKS
        MLDSIG E K   G  E++KDSKVVL G ++N L +++ V M  +   VS+  LTE +LWHKRL HIS KG++ LS+Q ILPKG++E LSFCE C++GK+
Subjt:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKS

Query:  IRQSIQKADHNTK
         RQS  K+ H TK
Subjt:  IRQSIQKADHNTK

XP_038904349.1 uncharacterized mitochondrial protein AtMg00300-like [Benincasa hispida]7.9e-2653.1Show/hide
Query:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKS
        MLDSI  EYK   G  E+LK++K +L G++ING+++++ V    +TL+V     TEGNLWHKRL HI+ KGL+ L+ + ILPKG+ + LSFCE CV GK+
Subjt:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKS

Query:  IRQSIQKADHNTK
         RQS  KA H TK
Subjt:  IRQSIQKADHNTK

TrEMBL top hitse value%identityAlignment
A0A5A7UY18 Gag_pre-integrs domain-containing protein3.5e-1950Show/hide
Query:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKS
        MLDS+G E K   G  ++ KDS+VVL G ++N LF IKEV M     +VS   LT+ +L HKRLSHIS KGL+ LS+Q ILP+ +   L   E CV+GK+
Subjt:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKS

Query:  IRQSIQKADHNT
         +Q+  KA H T
Subjt:  IRQSIQKADHNT

A0A5A7UZX2 Retrovirus-related Pol polyprotein from transposon TNT 1-943.2e-4179.65Show/hide
Query:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKS
        MLDSIG EYK SV RFEI KDSK+VL G +INGLF IKEVSMN   LIVSND LTEG+LWH RLS ISGKGLK+LSEQ I+PKGVAE LSFCE CVVGKS
Subjt:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKS

Query:  IRQSIQKADHNTK
         RQS QKADHNTK
Subjt:  IRQSIQKADHNTK

A0A5C7I1V3 CCHC-type domain-containing protein2.8e-1338.94Show/hide
Query:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKS
        +LD+ G+ YK   G  ++ K S VV+ G + NGL+L+  V++  +  + S  +  + +LWH+RL+H+S KGL  LS+Q +L     + LSFCE CV GK 
Subjt:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKS

Query:  IRQSIQKADHNTK
         R     + H TK
Subjt:  IRQSIQKADHNTK

A0A5C7ITL9 CCHC-type domain-containing protein3.4e-1439.82Show/hide
Query:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKS
        +LDS GY YK   G  +++K S VV+   + NGL+L+  V++  T  + +  +L +  LWH+RL+H+S KGL  LS+Q +L     + LSFC+ CV GK 
Subjt:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKS

Query:  IRQSIQKADHNTK
        I+     A H T+
Subjt:  IRQSIQKADHNTK

Q18L98 Putative gag-pol polyprotein7.5e-1439.13Show/hide
Query:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIK--EVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVG
        MLDS+GY +K  +G  E+ K +++V+ G+  NGL++++   V +      VS +  T+  LWH RL H+S KGL+ LS+Q +L     + L FCE C+ G
Subjt:  MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIK--EVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVG

Query:  KSIRQSIQKADHNTK
        KS R    K +H +K
Subjt:  KSIRQSIQKADHNTK

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.7e-0528.57Show/hide
Query:  LDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKSI
        LD  GYE   +  ++ + K S V+  G+   G        +    L  + D ++  +LWHKR+ H+S KGL++L+++ ++       +  C+ C+ GK  
Subjt:  LDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKSI

Query:  RQSIQ
        R S Q
Subjt:  RQSIQ

P93293 Uncharacterized mitochondrial protein AtMg003009.1e-0930.39Show/hide
Query:  SVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKSIRQSIQKADHN
        S G  ++LK  + +L G R + L+++ + S+      ++     E  LWH RL+H+S +G+++L ++  L       L FCE C+ GK+ R +     H 
Subjt:  SVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKSIRQSIQKADHN

Query:  TK
        TK
Subjt:  TK

Arabidopsis top hitse value%identityAlignment
ATMG00300.1 Gag-Pol-related retrotransposon family protein6.5e-1030.39Show/hide
Query:  SVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKSIRQSIQKADHN
        S G  ++LK  + +L G R + L+++ + S+      ++     E  LWH RL+H+S +G+++L ++  L       L FCE C+ GK+ R +     H 
Subjt:  SVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKSIRQSIQKADHN

Query:  TK
        TK
Subjt:  TK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGACTCCATAGGCTATGAATACAAGGACTCTGTTGGAAGGTTTGAAATATTAAAAGACTCCAAGGTTGTTCTTGCCGGTTTAAGAATCAATGGACTCTTTCTCAT
CAAAGAAGTGTCCATGAACCCTACTACCCTAATTGTTTCTAATGATATGCTAACTGAAGGGAATTTGTGGCATAAAAGACTTTCCCATATAAGTGGAAAGGGATTAAAAA
TGTTGTCAGAACAGAGAATTCTTCCTAAAGGAGTGGCTGAAATGCTATCTTTCTGTGAGCGTTGTGTAGTTGGCAAGTCTATAAGACAAAGTATTCAAAAGGCTGATCAC
AACACCAAGATCACAACACCAAAGCTATCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAGACTCCATAGGCTATGAATACAAGGACTCTGTTGGAAGGTTTGAAATATTAAAAGACTCCAAGGTTGTTCTTGCCGGTTTAAGAATCAATGGACTCTTTCTCAT
CAAAGAAGTGTCCATGAACCCTACTACCCTAATTGTTTCTAATGATATGCTAACTGAAGGGAATTTGTGGCATAAAAGACTTTCCCATATAAGTGGAAAGGGATTAAAAA
TGTTGTCAGAACAGAGAATTCTTCCTAAAGGAGTGGCTGAAATGCTATCTTTCTGTGAGCGTTGTGTAGTTGGCAAGTCTATAAGACAAAGTATTCAAAAGGCTGATCAC
AACACCAAGATCACAACACCAAAGCTATCCTAG
Protein sequenceShow/hide protein sequence
MLDSIGYEYKDSVGRFEILKDSKVVLAGLRINGLFLIKEVSMNPTTLIVSNDMLTEGNLWHKRLSHISGKGLKMLSEQRILPKGVAEMLSFCERCVVGKSIRQSIQKADH
NTKITTPKLS