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CSPI05G13730 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G13730
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr5:13691043..13691375
RNA-Seq ExpressionCSPI05G13730
SyntenyCSPI05G13730
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055625.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.5e-2358.62Show/hide
Query:  MAFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGKI
        MAF++GRQI DAILIA+EA++ W +K  KGF++KLDLEKA+DK++WSF+D  +  K +  +WRRWI  C+S+  +SII+N RPRGKI
Subjt:  MAFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGKI

KAA0065915.1 reverse transcriptase [Cucumis melo var. makuwa]5.7e-3177.78Show/hide
Query:  MAFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGKILAK
        MA MEGRQI  AIL+AS+ V+EWSLKGRKG LLKLDLE+AYDK DWSFLD+ +KLK FGKRWRRWIWG  ST NFSIIVN R RGKI AK
Subjt:  MAFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGKILAK

TYK07812.1 hypothetical protein E5676_scaffold1737G001060 [Cucumis melo var. makuwa]5.2e-2471.79Show/hide
Query:  FMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVN
        F  GRQI+D IL AS+ ++EW+LKGRKG LLKL+LEK YD+VDWS LDMA+KLK FG+RWRRWI G LS  NFSIIVN
Subjt:  FMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVN

TYK10921.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.5e-2358.62Show/hide
Query:  MAFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGKI
        MAF++GRQI DAILIA+EA++ W +K  KGF++KLDLEKA+DK++WSF+D  +  K +  +WRRWI  C+S+  +SII+N RPRGKI
Subjt:  MAFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGKI

XP_022132189.1 uncharacterized protein LOC111005109 [Momordica charantia]5.5e-2663.53Show/hide
Query:  AFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGK
        AF+ GRQI+DA LIA+E +E+W  K RKG ++KLD+EKA+DKVDW FLD  +  K F   WR+WIWGC+ST NFSII+N RPRGK
Subjt:  AFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGK

TrEMBL top hitse value%identityAlignment
A0A5A7VJL3 Reverse transcriptase2.8e-3177.78Show/hide
Query:  MAFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGKILAK
        MA MEGRQI  AIL+AS+ V+EWSLKGRKG LLKLDLE+AYDK DWSFLD+ +KLK FGKRWRRWIWG  ST NFSIIVN R RGKI AK
Subjt:  MAFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGKILAK

A0A6J1BSD3 uncharacterized protein LOC1110051092.7e-2663.53Show/hide
Query:  AFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGK
        AF+ GRQI+DA LIA+E +E+W  K RKG ++KLD+EKA+DKVDW FLD  +  K F   WR+WIWGC+ST NFSII+N RPRGK
Subjt:  AFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGK

A0A803P8A0 Uncharacterized protein7.8e-2661.18Show/hide
Query:  AFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGK
        AF+EGRQI+D++L+A+EAVE++  +G+KGF+LK+D EKAYD+VDW FLD+ ++ K FG+RWR+WI GC+S+ +FSI VN R RGK
Subjt:  AFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGK

A0A803QEA6 Uncharacterized protein2.7e-2662.35Show/hide
Query:  AFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGK
        AF+EGRQI+D++L+A+EAVE++  +GRKGF+LK+D EKAYD+VDW FLDM ++ K FG+RWR+WI GC+S+ +FSI +N R RGK
Subjt:  AFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGK

A0A803QQM3 Uncharacterized protein5.1e-2560Show/hide
Query:  AFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGK
        AF+EGRQI+D++L+A+EAVE++  +G+KG +LK+D EKAYD+VDW FLD+ M+ K FG+RW +WI GC+ST +FSI +N R RGK
Subjt:  AFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases6.8e-0642.86Show/hide
Query:  AFMEGRQIVDAILIASEAVEEW-SLKGRKGF-LLKLDLEKAYDKVDWSFLDMAMKLKDFGKRW
        +F+ GR   D I+   EAV      KG KG+ LLKLDLEKAYD++ W +L+  +    F + W
Subjt:  AFMEGRQIVDAILIASEAVEEW-SLKGRKGF-LLKLDLEKAYDKVDWSFLDMAMKLKDFGKRW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTTATGGAGGGGAGGCAAATTGTTGATGCTATTTTGATTGCTTCTGAGGCTGTTGAGGAATGGTCTTTAAAAGGCAGAAAAGGTTTTCTTTTGAAGCTTGATCT
AGAGAAAGCTTATGACAAGGTGGATTGGTCTTTTCTTGATATGGCCATGAAACTTAAAGACTTTGGTAAGAGATGGAGGAGATGGATTTGGGGCTGTTTGTCGACGGCTA
ATTTCTCCATCATTGTCAATGATAGGCCTAGAGGAAAGATTCTTGCTAAAGGGGCTTTCGTCAGACTGATCCTCATGCCCCTTTTCTTTTTACGATTGTGGGAGATGCTC
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTTTATGGAGGGGAGGCAAATTGTTGATGCTATTTTGATTGCTTCTGAGGCTGTTGAGGAATGGTCTTTAAAAGGCAGAAAAGGTTTTCTTTTGAAGCTTGATCT
AGAGAAAGCTTATGACAAGGTGGATTGGTCTTTTCTTGATATGGCCATGAAACTTAAAGACTTTGGTAAGAGATGGAGGAGATGGATTTGGGGCTGTTTGTCGACGGCTA
ATTTCTCCATCATTGTCAATGATAGGCCTAGAGGAAAGATTCTTGCTAAAGGGGCTTTCGTCAGACTGATCCTCATGCCCCTTTTCTTTTTACGATTGTGGGAGATGCTC
TAA
Protein sequenceShow/hide protein sequence
MAFMEGRQIVDAILIASEAVEEWSLKGRKGFLLKLDLEKAYDKVDWSFLDMAMKLKDFGKRWRRWIWGCLSTANFSIIVNDRPRGKILAKGAFVRLILMPLFFLRLWEML