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CSPI05G13770 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G13770
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPre-mRNA-splicing factor 38
Genome locationChr5:13703458..13707419
RNA-Seq ExpressionCSPI05G13770
SyntenyCSPI05G13770
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0035435 - phosphate ion transmembrane transport (biological process)
GO:0016020 - membrane (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0005315 - inorganic phosphate transmembrane transporter activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR005037 - Pre-mRNA-splicing factor 38


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK18924.1 pre-mRNA-splicing factor 38B [Cucumis melo var. makuwa]2.1e-5196.08Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+G +
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI

Query:  LL
         L
Subjt:  LL

XP_008463144.1 PREDICTED: pre-mRNA-splicing factor 38B [Cucumis melo]2.1e-5196.08Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+G +
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI

Query:  LL
         L
Subjt:  LL

XP_022938827.1 pre-mRNA splicing factor SR-like 1 [Cucurbita moschata]2.1e-5196.08Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+G +
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI

Query:  LL
         L
Subjt:  LL

XP_022993767.1 pre-mRNA splicing factor SR-like 1 [Cucurbita maxima]2.1e-5196.08Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+G +
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI

Query:  LL
         L
Subjt:  LL

XP_023550341.1 pre-mRNA splicing factor SR-like 1 [Cucurbita pepo subsp. pepo]2.1e-5196.08Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+G +
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI

Query:  LL
         L
Subjt:  LL

TrEMBL top hitse value%identityAlignment
A0A1S3CIJ0 Pre-mRNA-splicing factor 381.0e-5196.08Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+G +
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI

Query:  LL
         L
Subjt:  LL

A0A5A7TWJ6 Pre-mRNA-splicing factor 381.0e-5196.08Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+G +
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI

Query:  LL
         L
Subjt:  LL

A0A5D3D5T6 Pre-mRNA-splicing factor 381.0e-5196.08Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+G +
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI

Query:  LL
         L
Subjt:  LL

A0A6J1CK04 Pre-mRNA-splicing factor 381.0e-5196.08Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+G +
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI

Query:  LL
         L
Subjt:  LL

A0A6J1JTS5 Pre-mRNA-splicing factor 381.0e-5196.08Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+G +
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEI

Query:  LL
         L
Subjt:  LL

SwissProt top hitse value%identityAlignment
Q5VTL8 Pre-mRNA-splicing factor 38B1.9e-2357.69Show/hide
Query:  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG---------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYI
        L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G          STAFCLLYK FT+KLT KQ+ GL+ H DSPYI
Subjt:  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG---------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYI

Query:  RAVG
        RA+G
Subjt:  RAVG

Q6AXY7 Pre-mRNA-splicing factor 38B1.9e-2357.69Show/hide
Query:  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG---------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYI
        L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G          STAFCLLYK FT+KLT KQ+ GL+ H DSPYI
Subjt:  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG---------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYI

Query:  RAVG
        RA+G
Subjt:  RAVG

Q6P7Y3 Pre-mRNA-splicing factor 38B1.6e-2255.77Show/hide
Query:  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG---------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYI
        L  ++  N+LSS YFK +LY LKTYHEVVDEIY +V+HVEPW          TG C G          STAFCLLYK FT+KLT KQ+ GL+ H DSP I
Subjt:  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG---------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYI

Query:  RAVG
        RA+G
Subjt:  RAVG

Q80SY5 Pre-mRNA-splicing factor 38B1.9e-2357.69Show/hide
Query:  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG---------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYI
        L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G          STAFCLLYK FT+KLT KQ+ GL+ H DSPYI
Subjt:  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG---------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYI

Query:  RAVG
        RA+G
Subjt:  RAVG

Q8RWB1 Pre-mRNA splicing factor SR-like 18.9e-4583.17Show/hide
Query:  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEIL
        EI++ G+  +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRGPSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRAVG + 
Subjt:  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEIL

Query:  L
        L
Subjt:  L

Arabidopsis top hitse value%identityAlignment
AT5G37370.1 PRP38 family protein6.3e-4683.17Show/hide
Query:  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEIL
        EI++ G+  +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRGPSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRAVG + 
Subjt:  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEIL

Query:  L
        L
Subjt:  L

AT5G37370.2 PRP38 family protein6.3e-4683.17Show/hide
Query:  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEIL
        EI++ G+  +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRGPSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRAVG + 
Subjt:  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEIL

Query:  L
        L
Subjt:  L

AT5G37370.3 PRP38 family protein9.2e-4584.38Show/hide
Query:  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAV
        EI++ G+  +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRGPSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+
Subjt:  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAV

AT5G37370.4 PRP38 family protein7.8e-2087.5Show/hide
Query:  MTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEILL
        M GNCRGPSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRAVG + L
Subjt:  MTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEILL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATAAAGACTTGCGGGAAGCCAATTGATTCTTTGCTGGAGAAGGTTCTATGCATGAATATTCTGTCTTCTGATTACTTTAAGGAGCTATATCGTTTGAAGACATA
CCATGAAGTCGTTGATGAGATTTATAACCAAGTTGATCACGTGGAGCCATGGATGACTGGTAACTGTCGTGGCCCTTCAACAGCATTTTGCCTTCTGTACAAGTTTTTCA
CCATGAAACTTACTGTTAAGCAAATGCATGGGCTGTTAAAGCATGAGGATTCTCCTTACATCAGAGCGGTAGGTGAAATCCTTCTTGACCTTTAA
mRNA sequenceShow/hide mRNA sequence
GAAAAACCGAAACCCAAAATCATGTTCACTGCCCGCCATCGGTTGGGATCGGCATTATAAAAGCCCTAAGGAGCGCGTTGCCAAAATCCTCTCTCCTTACTGCGAGATTT
CCTTTCTTTGTTGTCTTTCCCTTTTCCCTTCGACTTCACATAATTTTTAACTTCAGGTAGATGTCTGGTTGATAACCCATAAATGGAGATAAAGACTTGCGGGAAGCCAA
TTGATTCTTTGCTGGAGAAGGTTCTATGCATGAATATTCTGTCTTCTGATTACTTTAAGGAGCTATATCGTTTGAAGACATACCATGAAGTCGTTGATGAGATTTATAAC
CAAGTTGATCACGTGGAGCCATGGATGACTGGTAACTGTCGTGGCCCTTCAACAGCATTTTGCCTTCTGTACAAGTTTTTCACCATGAAACTTACTGTTAAGCAAATGCA
TGGGCTGTTAAAGCATGAGGATTCTCCTTACATCAGAGCGGTAGGTGAAATCCTTCTTGACCTTTAA
Protein sequenceShow/hide protein sequence
MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGEILLDL