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CSPI05G14350 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G14350
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr5:14750105..14750611
RNA-Seq ExpressionCSPI05G14350
SyntenyCSPI05G14350
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047667.1 Retrotransposon gag protein [Cucumis melo var. makuwa]3.7e-0937.61Show/hide
Query:  MRIKRCMTDDKKNKVVKEDPCGQSLSST-QGEGVSQNRQ-----------------------TTGMNINAKGRLGFPKVRFNYGQPGHFARNCPHLGTQN
        M ++RC  D+K+NK++KED  GQS S    GE   +NR+                       + G   N + ++GFPK  FN    GHF + CP+LG Q 
Subjt:  MRIKRCMTDDKKNKVVKEDPCGQSLSST-QGEGVSQNRQ-----------------------TTGMNINAKGRLGFPKVRFNYGQPGHFARNCPHLGTQN

Query:  TQGVVSQSVNQPYLSSE
            VSQSVNQPY   E
Subjt:  TQGVVSQSVNQPYLSSE

KAA0068145.1 hypothetical protein E6C27_scaffold238G001100 [Cucumis melo var. makuwa]1.6e-0744.3Show/hide
Query:  SQNRQTTGMNINAKGRLGFPKVRFNYGQPGHFARNCPHLGTQNTQGVVSQSVNQPYLSSEPEKGPSETKEPGSPSPKGR
        +  +QTT + +N + R+GF K  FN  QPGHFA+ CP+LG Q  +    QSVNQPY   E E  PS  + P  P  +G+
Subjt:  SQNRQTTGMNINAKGRLGFPKVRFNYGQPGHFARNCPHLGTQNTQGVVSQSVNQPYLSSEPEKGPSETKEPGSPSPKGR

TrEMBL top hitse value%identityAlignment
A0A5A7U0D1 Retrotransposon gag protein1.8e-0937.61Show/hide
Query:  MRIKRCMTDDKKNKVVKEDPCGQSLSST-QGEGVSQNRQ-----------------------TTGMNINAKGRLGFPKVRFNYGQPGHFARNCPHLGTQN
        M ++RC  D+K+NK++KED  GQS S    GE   +NR+                       + G   N + ++GFPK  FN    GHF + CP+LG Q 
Subjt:  MRIKRCMTDDKKNKVVKEDPCGQSLSST-QGEGVSQNRQ-----------------------TTGMNINAKGRLGFPKVRFNYGQPGHFARNCPHLGTQN

Query:  TQGVVSQSVNQPYLSSE
            VSQSVNQPY   E
Subjt:  TQGVVSQSVNQPYLSSE

A0A5A7VQZ2 CCHC-type domain-containing protein7.6e-0844.3Show/hide
Query:  SQNRQTTGMNINAKGRLGFPKVRFNYGQPGHFARNCPHLGTQNTQGVVSQSVNQPYLSSEPEKGPSETKEPGSPSPKGR
        +  +QTT + +N + R+GF K  FN  QPGHFA+ CP+LG Q  +    QSVNQPY   E E  PS  + P  P  +G+
Subjt:  SQNRQTTGMNINAKGRLGFPKVRFNYGQPGHFARNCPHLGTQNTQGVVSQSVNQPYLSSEPEKGPSETKEPGSPSPKGR

A0A5D3D4T2 Uncharacterized protein6.7e-0439.22Show/hide
Query:  KVVKEDPCGQSLSSTQGE---GVSQNRQTTGMNINAKGRLGFPKVRFNYGQPGHFARNCPHLGTQNTQGVVSQSVNQPYLSSEPEKGPSETKEPGSPSPK
        KV++E P   + + T  E   G        G N+N      FPKV F+ GQ GH  + CP+ G QN Q  V QSVNQPY  S  E+  S  K  G   PK
Subjt:  KVVKEDPCGQSLSSTQGE---GVSQNRQTTGMNINAKGRLGFPKVRFNYGQPGHFARNCPHLGTQNTQGVVSQSVNQPYLSSEPEKGPSETKEPGSPSPK

Query:  GR
         +
Subjt:  GR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAATTAAGAGATGCATGACAGATGATAAGAAAAATAAAGTTGTAAAGGAAGACCCTTGTGGCCAAAGTCTTAGTAGCACGCAAGGAGAAGGAGTTTCTCAAAATAG
ACAGACTACTGGAATGAATATTAATGCTAAAGGAAGACTTGGTTTTCCAAAGGTTCGCTTCAATTATGGCCAACCAGGACATTTTGCAAGGAATTGTCCTCACTTGGGGA
CTCAGAACACACAAGGAGTTGTGTCCCAATCTGTCAATCAACCTTATCTTTCAAGTGAACCTGAAAAAGGTCCAAGTGAAACTAAAGAACCTGGGAGCCCAAGTCCCAAG
GGAAGATGTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAATTAAGAGATGCATGACAGATGATAAGAAAAATAAAGTTGTAAAGGAAGACCCTTGTGGCCAAAGTCTTAGTAGCACGCAAGGAGAAGGAGTTTCTCAAAATAG
ACAGACTACTGGAATGAATATTAATGCTAAAGGAAGACTTGGTTTTCCAAAGGTTCGCTTCAATTATGGCCAACCAGGACATTTTGCAAGGAATTGTCCTCACTTGGGGA
CTCAGAACACACAAGGAGTTGTGTCCCAATCTGTCAATCAACCTTATCTTTCAAGTGAACCTGAAAAAGGTCCAAGTGAAACTAAAGAACCTGGGAGCCCAAGTCCCAAG
GGAAGATGTCCATGA
Protein sequenceShow/hide protein sequence
MRIKRCMTDDKKNKVVKEDPCGQSLSSTQGEGVSQNRQTTGMNINAKGRLGFPKVRFNYGQPGHFARNCPHLGTQNTQGVVSQSVNQPYLSSEPEKGPSETKEPGSPSPK
GRCP