; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G14580 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G14580
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationChr5:15052272..15053074
RNA-Seq ExpressionCSPI05G14580
SyntenyCSPI05G14580
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648415.1 hypothetical protein Csa_008526 [Cucumis sativus]1.5e-5195.15Show/hide
Query:  MYKTPIEMSPYAIIFGKACHLPLELEHKALWIGILKPMRMPKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRLHWFGPFLVKEVFPHGAVEITSTGGTN
        MYKTPIEMSPYAIIFGKACHLPLELEHKA WIGILKPMRMPKIYK+RTKAWHDNCIRKREFSIGQ VLLFNSRL WFGPFLVKEVFPHGAVEITST GTN
Subjt:  MYKTPIEMSPYAIIFGKACHLPLELEHKALWIGILKPMRMPKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRLHWFGPFLVKEVFPHGAVEITSTGGTN

Query:  TFE
        TFE
Subjt:  TFE

XP_038882265.1 uncharacterized protein LOC120073494 [Benincasa hispida]1.9e-2748.89Show/hide
Query:  YKTPIEMSPYAIIFGKACHLPLELEHKALWI------------------------GILKPMRMPKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRLH--
        YKTPI MSPYA++FGKACHLPLELE+K +W                           L+     KIYKERTK WHD C+ ++    GQ VLLFNS LH  
Subjt:  YKTPIEMSPYAIIFGKACHLPLELEHKALWI------------------------GILKPMRMPKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRLH--

Query:  -------WFGPFLVKEVFPHGAVEITSTGGTNTFE
               W GPF++KEVFPHGAVE+T+  GTN F+
Subjt:  -------WFGPFLVKEVFPHGAVEITSTGGTNTFE

XP_038895857.1 uncharacterized protein LOC120084026 [Benincasa hispida]1.1e-2748.53Show/hide
Query:  MYKTPIEMSPYAIIFGKACHLPLELEHKALWI------------------------GILKPMRMPKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRL--
        +YKTPI MSPYA++FGK CHLPL+LE+KA+W                           L+     KIYKERTK WHD C+ K+   IGQ VLLFNSRL  
Subjt:  MYKTPIEMSPYAIIFGKACHLPLELEHKALWI------------------------GILKPMRMPKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRL--

Query:  -------HWFGPFLVKEVFPHGAVEITSTGGTNTFE
                W GPF++KEVFPHG+VE+T+  GTN F+
Subjt:  -------HWFGPFLVKEVFPHGAVEITSTGGTNTFE

XP_038899077.1 uncharacterized protein LOC120086476 [Benincasa hispida]7.8e-2950.37Show/hide
Query:  YKTPIEMSPYAIIFGKACHLPLELEHKALW-----------IGILKPMRM-------------PKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRLH--
        YKTPI MSPYA++FGK CHLPLELE+KA+W            G  + +++              KIYKERTK WHD C  ++    GQ VLLFNSRLH  
Subjt:  YKTPIEMSPYAIIFGKACHLPLELEHKALW-----------IGILKPMRM-------------PKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRLH--

Query:  -------WFGPFLVKEVFPHGAVEITSTGGTNTFE
               WFGPF++KEVFPHGAVE+T+  GTN F+
Subjt:  -------WFGPFLVKEVFPHGAVEITSTGGTNTFE

XP_038904472.1 uncharacterized protein LOC120090841 [Benincasa hispida]2.8e-2648.51Show/hide
Query:  KTPIEMSPYAIIFGKACHLPLELEHKALWIG------------------------ILKPMRMPKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRL----
        KTPIEMSPYA++FGKACHLPLELEHKALWIG                         ++     KIYKER K WHD  + ++   +GQ VLL+NS+L    
Subjt:  KTPIEMSPYAIIFGKACHLPLELEHKALWIG------------------------ILKPMRMPKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRL----

Query:  -----HWFGPFLVKEVFPHGAVEITSTGGTNTFE
             HW  PF++KEVF HGAVE+T+  GTN F+
Subjt:  -----HWFGPFLVKEVFPHGAVEITSTGGTNTFE

TrEMBL top hitse value%identityAlignment
A0A2K3K887 Uncharacterized protein (Fragment)2.8e-2446.56Show/hide
Query:  YKTPIEMSPYAIIFGKACHLPLELEHKALW-------------------IGILKPMRM-----PKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRL---
        +KTPI MSPY ++FGK+CHLP+ELEHKALW                   +  L  +R+      K+YKERTK WHD  I+ REF IG  VL++NSRL   
Subjt:  YKTPIEMSPYAIIFGKACHLPLELEHKALW-------------------IGILKPMRM-----PKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRL---

Query:  ------HWFGPFLVKEVFPHGAVEITSTGGT
               WFGP+ V +VFPHGA+E++   GT
Subjt:  ------HWFGPFLVKEVFPHGAVEITSTGGT

A0A4Y1QWW9 Reverse transcriptase1.4e-2346.67Show/hide
Query:  YKTPIEMSPYAIIFGKACHLPLELEHKALW-------------------IGILKPMRM-----PKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRL---
        YKTPI MSP+ +++GKACHLP+ELEHKA W                   +  L+ +R       +IYKERTKA+HD+ I ++EF  GQ VLLF+SRL   
Subjt:  YKTPIEMSPYAIIFGKACHLPLELEHKALW-------------------IGILKPMRM-----PKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRL---

Query:  ------HWFGPFLVKEVFPHGAVEITSTGGTNTFE
               W GP+LV +VFPHGAV+IT+    NTF+
Subjt:  ------HWFGPFLVKEVFPHGAVEITSTGGTNTFE

A0A4Y1RS08 Transposable element protein1.4e-2346.67Show/hide
Query:  YKTPIEMSPYAIIFGKACHLPLELEHKALW-------------------IGILKPMRM-----PKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRL---
        YKTPI MSP+ +++GKACHLP+ELEHKA W                   +  L+ +R       +IYKERTKA+HD+ I ++EF  GQ VLLF+SRL   
Subjt:  YKTPIEMSPYAIIFGKACHLPLELEHKALW-------------------IGILKPMRM-----PKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRL---

Query:  ------HWFGPFLVKEVFPHGAVEITSTGGTNTFE
               W GP+LV +VFPHGAV+IT+    NTF+
Subjt:  ------HWFGPFLVKEVFPHGAVEITSTGGTNTFE

A0A5H2XH13 Transposable element protein8.2e-2447.37Show/hide
Query:  YKTPIEMSPYAIIFGKACHLPLELEHKALW-----------------IGILKPMRM-----PKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRL-----
        YKTPI MSP+ +++GKACHLP+ELEHKA W                 +  L+ +R       +IYKERTKA+HD+ I ++EF  GQ VLLF+SRL     
Subjt:  YKTPIEMSPYAIIFGKACHLPLELEHKALW-----------------IGILKPMRM-----PKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRL-----

Query:  ----HWFGPFLVKEVFPHGAVEITSTGGTNTFE
             W GP+LV +VFPHGAV+IT+    NTF+
Subjt:  ----HWFGPFLVKEVFPHGAVEITSTGGTNTFE

A0A6P5TAD6 LOW QUALITY PROTEIN: uncharacterized protein LOC1107652324.8e-2447.69Show/hide
Query:  YKTPIEMSPYAIIFGKACHLPLELEHKALW-------------------IGILKPMRMPKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRL--------
        YKTPI MSPY ++FGKACHLP+ELEH+A W                   I  L+ +R  KIYKERTK +HD  I ++EF  G  VLL++SRL        
Subjt:  YKTPIEMSPYAIIFGKACHLPLELEHKALW-------------------IGILKPMRMPKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRL--------

Query:  -HWFGPFLVKEVFPHGAVEITSTGGTNTFE
          W GPF V +VFPHGAVEI +     TF+
Subjt:  -HWFGPFLVKEVFPHGAVEITSTGGTNTFE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAAGACACCGATTGAAATGTCTCCTTACGCAATAATCTTTGGGAAAGCATGCCACTTACCACTGGAGTTGGAGCACAAGGCGTTATGGATTGGCATTCTCAAGCC
TATGAGAATGCCAAAAATTTACAAGGAAAGGACAAAGGCATGGCATGATAACTGCATCCGTAAACGTGAATTTAGCATTGGTCAGAATGTGTTATTATTCAATTCACGTT
TGCATTGGTTTGGGCCATTTTTGGTCAAGGAAGTTTTTCCGCATGGTGCAGTAGAGATCACATCGACAGGTGGAACAAACACGTTTGAGGAATCATTGGACAACTTGCTG
CTATGTGAGAAATCCAAGGACAATGGCGCGATGAAAACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTACAAGACACCGATTGAAATGTCTCCTTACGCAATAATCTTTGGGAAAGCATGCCACTTACCACTGGAGTTGGAGCACAAGGCGTTATGGATTGGCATTCTCAAGCC
TATGAGAATGCCAAAAATTTACAAGGAAAGGACAAAGGCATGGCATGATAACTGCATCCGTAAACGTGAATTTAGCATTGGTCAGAATGTGTTATTATTCAATTCACGTT
TGCATTGGTTTGGGCCATTTTTGGTCAAGGAAGTTTTTCCGCATGGTGCAGTAGAGATCACATCGACAGGTGGAACAAACACGTTTGAGGAATCATTGGACAACTTGCTG
CTATGTGAGAAATCCAAGGACAATGGCGCGATGAAAACCTAG
Protein sequenceShow/hide protein sequence
MYKTPIEMSPYAIIFGKACHLPLELEHKALWIGILKPMRMPKIYKERTKAWHDNCIRKREFSIGQNVLLFNSRLHWFGPFLVKEVFPHGAVEITSTGGTNTFEESLDNLL
LCEKSKDNGAMKT