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CSPI05G14910 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G14910
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionNuclear transcription factor Y subunit C
Genome locationChr5:15638579..15638791
RNA-Seq ExpressionCSPI05G14910
SyntenyCSPI05G14910
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057769.1 nuclear transcription factor Y subunit C-1 [Cucumis melo var. makuwa]2.9e-2889.86Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS
        RTDIFDFLVDIVPRDEIKDEA +GGMVGAT SGVPYYYPP+GQP GAPGGMMIGRP MDPTGVYAQP S
Subjt:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS

XP_004138046.1 nuclear transcription factor Y subunit C-1 [Cucumis sativus]2.9e-2889.86Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS
        RTDIFDFLVDIVPRDEIKDEA +GGMVGAT SGVPYYYPP+GQP GAPGGMMIGRP MDPTGVYAQP S
Subjt:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS

XP_008464428.1 PREDICTED: nuclear transcription factor Y subunit C-1 [Cucumis melo]2.9e-2889.86Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS
        RTDIFDFLVDIVPRDEIKDEA +GGMVGAT SGVPYYYPP+GQP GAPGGMMIGRP MDPTGVYAQP S
Subjt:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS

XP_022134838.1 nuclear transcription factor Y subunit C-1-like [Momordica charantia]2.9e-2889.86Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS
        RTDIFDFLVDIVPRDEIKDEA +GGMVGAT SGVPYYYPP+GQP GAPGGMMIGRP MDPTGVYAQP S
Subjt:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS

XP_038878995.1 nuclear transcription factor Y subunit C-1 [Benincasa hispida]2.9e-2889.86Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS
        RTDIFDFLVDIVPRDEIKDEA +GGMVGAT SGVPYYYPP+GQP GAPGGMMIGRP MDPTGVYAQP S
Subjt:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS

TrEMBL top hitse value%identityAlignment
A0A0A0LNK7 CBFD_NFYB_HMF domain-containing protein1.4e-2889.86Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS
        RTDIFDFLVDIVPRDEIKDEA +GGMVGAT SGVPYYYPP+GQP GAPGGMMIGRP MDPTGVYAQP S
Subjt:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS

A0A1S3CLW7 nuclear transcription factor Y subunit C-11.4e-2889.86Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS
        RTDIFDFLVDIVPRDEIKDEA +GGMVGAT SGVPYYYPP+GQP GAPGGMMIGRP MDPTGVYAQP S
Subjt:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS

A0A5D3BF73 Nuclear transcription factor Y subunit C-11.4e-2889.86Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS
        RTDIFDFLVDIVPRDEIKDEA +GGMVGAT SGVPYYYPP+GQP GAPGGMMIGRP MDPTGVYAQP S
Subjt:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS

A0A6J1C352 nuclear transcription factor Y subunit C-1-like1.4e-2889.86Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS
        RTDIFDFLVDIVPRDEIKDEA +GGMVGAT SGVPYYYPP+GQP GAPGGMMIGRP MDPTGVYAQP S
Subjt:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS

A0A6J1JJG4 nuclear transcription factor Y subunit C-15.3e-2888.41Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS
        RTDIFDFLVDIVPRDEIKDEA +GGMVGAT SGVPYYYPP+GQP G PGGMMIGRP MDPTGVYAQP S
Subjt:  RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS

SwissProt top hitse value%identityAlignment
A6BLW4 Nuclear transcription factor Y subunit C-22.0e-0854.55Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEA------RMGGMVGAT-----VSGVPYYYPPIGQP
        RTD+FDFLVDIVPR+E K+E         GG  GA       +G+PYYYPP+GQP
Subjt:  RTDIFDFLVDIVPRDEIKDEA------RMGGMVGAT-----VSGVPYYYPPIGQP

Q8L4B2 Nuclear transcription factor Y subunit C-92.9e-0750.82Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEA----RMGGMVGATVSGVPYYYPPIG-QPVGAPGGMMIGRP
        RTDIFDFLVDIVPR++++DE       G +  A  +G PY Y P G  P+G P GM++G P
Subjt:  RTDIFDFLVDIVPRDEIKDEA----RMGGMVGATVSGVPYYYPPIG-QPVGAPGGMMIGRP

Q9FMV5 Nuclear transcription factor Y subunit C-41.9e-2270.67Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARM------GGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS
        RTDIFDFLVDIVPR+EIK+E         GGMV    SGVPYYYPP+GQP   PGGMMIGRP MDP+GVYAQP S
Subjt:  RTDIFDFLVDIVPRDEIKDEARM------GGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS

Q9SMP0 Nuclear transcription factor Y subunit C-12.6e-2480.56Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARM--GGMVGA-TVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS
        RTDIFDFLVDIVPRDEIKDEA +  GGMV A T SGVPYYYPP+GQP G PGGMMIGRP MDP GVY QP S
Subjt:  RTDIFDFLVDIVPRDEIKDEARM--GGMVGA-TVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS

Q9ZVL3 Nuclear transcription factor Y subunit C-31.1e-0953.03Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARMG-GMVGATVSGVPY-YYPPIGQPVGAPGGMMIGRPTMDPTGVY
        RTDIFDFLVDIVPR++++DE   G G   AT +G PY Y PP   P+G P GM++G P   P   Y
Subjt:  RTDIFDFLVDIVPRDEIKDEARMG-GMVGATVSGVPY-YYPPIGQPVGAPGGMMIGRPTMDPTGVY

Arabidopsis top hitse value%identityAlignment
AT1G54830.1 nuclear factor Y, subunit C37.6e-1153.03Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARMG-GMVGATVSGVPY-YYPPIGQPVGAPGGMMIGRPTMDPTGVY
        RTDIFDFLVDIVPR++++DE   G G   AT +G PY Y PP   P+G P GM++G P   P   Y
Subjt:  RTDIFDFLVDIVPRDEIKDEARMG-GMVGATVSGVPY-YYPPIGQPVGAPGGMMIGRPTMDPTGVY

AT1G54830.2 nuclear factor Y, subunit C37.6e-1153.03Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARMG-GMVGATVSGVPY-YYPPIGQPVGAPGGMMIGRPTMDPTGVY
        RTDIFDFLVDIVPR++++DE   G G   AT +G PY Y PP   P+G P GM++G P   P   Y
Subjt:  RTDIFDFLVDIVPRDEIKDEARMG-GMVGATVSGVPY-YYPPIGQPVGAPGGMMIGRPTMDPTGVY

AT3G48590.1 nuclear factor Y, subunit C11.9e-2580.56Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARM--GGMVGA-TVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS
        RTDIFDFLVDIVPRDEIKDEA +  GGMV A T SGVPYYYPP+GQP G PGGMMIGRP MDP GVY QP S
Subjt:  RTDIFDFLVDIVPRDEIKDEARM--GGMVGA-TVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS

AT5G63470.1 nuclear factor Y, subunit C41.3e-2370.67Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARM------GGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS
        RTDIFDFLVDIVPR+EIK+E         GGMV    SGVPYYYPP+GQP   PGGMMIGRP MDP+GVYAQP S
Subjt:  RTDIFDFLVDIVPRDEIKDEARM------GGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS

AT5G63470.2 nuclear factor Y, subunit C41.3e-2370.67Show/hide
Query:  RTDIFDFLVDIVPRDEIKDEARM------GGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS
        RTDIFDFLVDIVPR+EIK+E         GGMV    SGVPYYYPP+GQP   PGGMMIGRP MDP+GVYAQP S
Subjt:  RTDIFDFLVDIVPRDEIKDEARM------GGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGACCGATATCTTTGATTTCTTAGTTGACATTGTTCCTAGGGATGAGATCAAGGATGAGGCTAGGATGGGCGGTATGGTTGGAGCTACTGTTAGTGGAGTTCCCTA
CTATTATCCGCCTATAGGTCAACCTGTGGGGGCTCCCGGGGGAATGATGATTGGAAGACCGACAATGGATCCCACTGGAGTTTACGCTCAGCCGTCGTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGACCGATATCTTTGATTTCTTAGTTGACATTGTTCCTAGGGATGAGATCAAGGATGAGGCTAGGATGGGCGGTATGGTTGGAGCTACTGTTAGTGGAGTTCCCTA
CTATTATCCGCCTATAGGTCAACCTGTGGGGGCTCCCGGGGGAATGATGATTGGAAGACCGACAATGGATCCCACTGGAGTTTACGCTCAGCCGTCGTCCTAG
Protein sequenceShow/hide protein sequence
MRTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDPTGVYAQPSS