; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G15020 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G15020
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon protein
Genome locationChr5:15807106..15807417
RNA-Seq ExpressionCSPI05G15020
SyntenyCSPI05G15020
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]5.3e-3977.88Show/hide
Query:  MASTNSKATKHRWTTI------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRKC
        MASTNSKATKHRWTTI            EEGGWRA NGTFK GYLVQVQKLMKEKI GSNIQVTPNL+ RVKILKKQY AI EMMGPACS F WNE+RKC
Subjt:  MASTNSKATKHRWTTI------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRKC

Query:  IESEKFVFDDLVK
        IE+EK VFDD VK
Subjt:  IESEKFVFDDLVK

KGN51053.1 hypothetical protein Csa_009100 [Cucumis sativus]7.2e-5297.12Show/hide
Query:  MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRKCIESEKFVFDDLV
        MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGP+CSRF WNEKRKCIE+EKFVFDDLV
Subjt:  MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRKCIESEKFVFDDLV

Query:  KVRQ
        KVRQ
Subjt:  KVRQ

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-3876.32Show/hide
Query:  MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRK
        MASTNSKATKHRWTTI             EEGGWRA N TFKP YLVQVQKLMKEKIP SNIQVT NLE RVK LKKQYTAI +MMGPACSRF WNE+RK
Subjt:  MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRK

Query:  CIESEKFVFDDLVK
        CIE+EK VFDD VK
Subjt:  CIESEKFVFDDLVK

XP_008455678.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]2.0e-3876.32Show/hide
Query:  MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRK
        MASTNSKATKHRWTTI             EEGGWRA N TFKP YLVQVQKLMKEKIP SNIQVT NLE RVK LKKQYTAI +MMGPACSRF WNE+RK
Subjt:  MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRK

Query:  CIESEKFVFDDLVK
        CIE+EK VFDD VK
Subjt:  CIESEKFVFDDLVK

XP_031741735.1 uncharacterized protein At2g29880-like [Cucumis sativus]3.0e-5097.03Show/hide
Query:  MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRKCIESEKFVFDDLV
        MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGP+CSRF WNEKRKCIE+EKFVFDDLV
Subjt:  MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRKCIESEKFVFDDLV

Query:  K
        K
Subjt:  K

TrEMBL top hitse value%identityAlignment
A0A0A0KNB4 Uncharacterized protein3.5e-5297.12Show/hide
Query:  MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRKCIESEKFVFDDLV
        MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGP+CSRF WNEKRKCIE+EKFVFDDLV
Subjt:  MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRKCIESEKFVFDDLV

Query:  KVRQ
        KVRQ
Subjt:  KVRQ

A0A1S3C252 uncharacterized protein At2g29880-like9.8e-3976.32Show/hide
Query:  MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRK
        MASTNSKATKHRWTTI             EEGGWRA N TFKP YLVQVQKLMKEKIP SNIQVT NLE RVK LKKQYTAI +MMGPACSRF WNE+RK
Subjt:  MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRK

Query:  CIESEKFVFDDLVK
        CIE+EK VFDD VK
Subjt:  CIESEKFVFDDLVK

A0A5A7TF70 Putative nuclease HARBI13.9e-3571.56Show/hide
Query:  KATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRKCIESEK
        +A KH+WTTI             EEGGWR  NGTFK GYLVQVQKLMKEKIP SNIQVTPNLE RVKILKKQYT I +MMGPAC+ F WNE+RKCIE+EK
Subjt:  KATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRKCIESEK

Query:  FVFDDLVKV
         VFDD VKV
Subjt:  FVFDDLVKV

A0A5A7U7F7 Retrotransposon protein2.6e-3977.88Show/hide
Query:  MASTNSKATKHRWTTI------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRKC
        MASTNSKATKHRWTTI            EEGGWRA NGTFK GYLVQVQKLMKEKI GSNIQVTPNL+ RVKILKKQY AI EMMGPACS F WNE+RKC
Subjt:  MASTNSKATKHRWTTI------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRKC

Query:  IESEKFVFDDLVK
        IE+EK VFDD VK
Subjt:  IESEKFVFDDLVK

A0A5D3BC95 Retrotransposon protein9.8e-3976.32Show/hide
Query:  MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRK
        MASTNSKATKHRWTTI             EEGGWRA N TFKP YLVQVQKLMKEKIP SNIQVT NLE RVK LKKQYTAI +MMGPACSRF WNE+RK
Subjt:  MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRK

Query:  CIESEKFVFDDLVK
        CIE+EK VFDD VK
Subjt:  CIESEKFVFDDLVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGACAAATTCAAAAGCCACAAAGCATCGATGGACAACCATTGAAGAAGGTGGTTGGAGGGCTTACAATGGGACATTCAAACCAGGATATTTAGTACAAGTACA
GAAACTAATGAAAGAAAAAATTCCTGGAAGCAACATACAAGTAACTCCAAATCTAGAGCCGAGAGTGAAAATTTTGAAGAAGCAGTACACTGCCATAGTAGAGATGATGG
GGCCAGCGTGTAGCAGGTTTGACTGGAATGAGAAACGAAAGTGCATTGAGTCAGAGAAATTTGTGTTCGATGACTTGGTTAAGGTAAGACAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGACAAATTCAAAAGCCACAAAGCATCGATGGACAACCATTGAAGAAGGTGGTTGGAGGGCTTACAATGGGACATTCAAACCAGGATATTTAGTACAAGTACA
GAAACTAATGAAAGAAAAAATTCCTGGAAGCAACATACAAGTAACTCCAAATCTAGAGCCGAGAGTGAAAATTTTGAAGAAGCAGTACACTGCCATAGTAGAGATGATGG
GGCCAGCGTGTAGCAGGTTTGACTGGAATGAGAAACGAAAGTGCATTGAGTCAGAGAAATTTGTGTTCGATGACTTGGTTAAGGTAAGACAG
Protein sequenceShow/hide protein sequence
MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPACSRFDWNEKRKCIESEKFVFDDLVKVRQ