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CSPI05G15610 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G15610
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationChr5:16614516..16615101
RNA-Seq ExpressionCSPI05G15610
SyntenyCSPI05G15610
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW38187.1 hypothetical protein CK203_106211 [Vitis vinifera]2.8e-1872.06Show/hide
Query:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKN
        MSMMGEL+FF+GLQIKQLK+G FI++ KY RDLLK+F + E K  KTPMS++ KLDKDEKDFNL+LKN
Subjt:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKN

RVW88079.1 hypothetical protein CK203_044410 [Vitis vinifera]3.1e-1771.43Show/hide
Query:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKNHI
        MSM+GEL+FFL LQIKQLK+G FI+Q KY RDLLK+F + E K  KTPMS++ KL+KDEKDFNLVLKN I
Subjt:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKNHI

RVW96197.1 hypothetical protein CK203_037733 [Vitis vinifera]8.1e-1873.53Show/hide
Query:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKN
        MSMMGEL+FFLGLQIKQLK G FI++ KY RDLLK+F + E K  KTPMS++ KLD+DEKDFNLVLKN
Subjt:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKN

RVX02732.1 hypothetical protein CK203_016560 [Vitis vinifera]1.4e-1771.43Show/hide
Query:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKNHI
        MSMMGEL+FFLGLQIKQLK+G FI+Q KY +DLLK+F + E K  KTPMS++ KLD +EKDFNLVLKN I
Subjt:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKNHI

WP_217833186.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]1.0e-2091.67Show/hide
Query:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK
        MSMMGELSFFLG+QIKQLKD IFISQEKYTRDLLK+FK NEGK+AKTPMSTTTKLDKDEK
Subjt:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK

TrEMBL top hitse value%identityAlignment
A0A438DRR9 Reverse transcriptase Ty1/copia-type domain-containing protein1.3e-1872.06Show/hide
Query:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKN
        MSMMGEL+FF+GLQIKQLK+G FI++ KY RDLLK+F + E K  KTPMS++ KLDKDEKDFNL+LKN
Subjt:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKN

A0A438HUF5 CCHC-type domain-containing protein1.5e-1771.43Show/hide
Query:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKNHI
        MSM+GEL+FFL LQIKQLK+G FI+Q KY RDLLK+F + E K  KTPMS++ KL+KDEKDFNLVLKN I
Subjt:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKNHI

A0A438IHN9 Reverse transcriptase Ty1/copia-type domain-containing protein3.9e-1873.53Show/hide
Query:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKN
        MSMMGEL+FFLGLQIKQLK G FI++ KY RDLLK+F + E K  KTPMS++ KLD+DEKDFNLVLKN
Subjt:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKN

A0A438J1E6 Reverse transcriptase Ty1/copia-type domain-containing protein6.7e-1871.43Show/hide
Query:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKNHI
        MSMMGEL+FFLGLQIKQLK+G FI+Q KY +DLLK+F + E K  KTPMS++ KLD +EKDFNLVLKN I
Subjt:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKNHI

A0A6A3AQW2 Uncharacterized protein9.6e-1770Show/hide
Query:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKNHI
        MSMMGELSFFLGLQIKQ KD IFI+Q KY +D+LKKF L  GK   TPMS++TKLD DE DFN  L+NH+
Subjt:  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKNHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGATGGGAGAACTTAGTTTCTTCCTTGGTCTTCAAATCAAACAACTCAAGGATGGCATCTTCATAAGTCAAGAAAAATACACAAGGGATTTGCTCAAGAAATT
CAAATTAAATGAAGGTAAAGTTGCAAAAACTCCTATGAGCACTACCACTAAGCTTGACAAAGATGAAAAAGATTTCAATCTTGTCCTAAAGAATCACATTTCCATGCCGT
TAAAAGGATACTTAAATATTTGCTTGGAACTATTGATGTTGGATTATGGTATCCTAGAAATGTTGAGTTTAATTTGGTATGATATTCCGATACGGATTTTGCCGGTAGTT
TACTTGACCGTAAAAGTACTAGTGGGACTTGCCAATTTCTTGGTAGTCCTTTGGTATCTTGGTTTAGTAAAAAGCAAAATTTGGTTGCGTTATCCACTACCGAAGCAGAA
TATATTGCGGTTGCTAGTTGTTGTGCACAAATTCTTTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGATGGGAGAACTTAGTTTCTTCCTTGGTCTTCAAATCAAACAACTCAAGGATGGCATCTTCATAAGTCAAGAAAAATACACAAGGGATTTGCTCAAGAAATT
CAAATTAAATGAAGGTAAAGTTGCAAAAACTCCTATGAGCACTACCACTAAGCTTGACAAAGATGAAAAAGATTTCAATCTTGTCCTAAAGAATCACATTTCCATGCCGT
TAAAAGGATACTTAAATATTTGCTTGGAACTATTGATGTTGGATTATGGTATCCTAGAAATGTTGAGTTTAATTTGGTATGATATTCCGATACGGATTTTGCCGGTAGTT
TACTTGACCGTAAAAGTACTAGTGGGACTTGCCAATTTCTTGGTAGTCCTTTGGTATCTTGGTTTAGTAAAAAGCAAAATTTGGTTGCGTTATCCACTACCGAAGCAGAA
TATATTGCGGTTGCTAGTTGTTGTGCACAAATTCTTTGGATGA
Protein sequenceShow/hide protein sequence
MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKNHISMPLKGYLNICLELLMLDYGILEMLSLIWYDIPIRILPVV
YLTVKVLVGLANFLVVLWYLGLVKSKIWLRYPLPKQNILRLLVVVHKFFG