CuGenDBv2

Gene ID	CSPI05G15680
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	U3 small nucleolar ribonucleoprotein protein IMP4
Genome location	Chr5:16729776..16732350
RNA-Seq Expression	CSPI05G15680
Synteny	CSPI05G15680
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0016363 - nuclear matrix (cellular component) GO:0032040 - small-subunit processome (cellular component) GO:0034457 - Mpp10 complex (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0030515 - snoRNA binding (molecular function) GO:0042134 - rRNA primary transcript binding (molecular function)
InterPro domains	IPR044281 - U3 snoRNP protein/Ribosome production factor 1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6579112.1 U3 small nucleolar ribonucleoprotein IMP4, partial [Cucurbita argyrosperma subsp. sororia]

2.8e-21

94.55

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Query:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLG
        ++HGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKR FLG
Subjt:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLG

KAG7016636.1 U3 small nucleolar ribonucleoprotein IMP4, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.8e-21

94.55

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Query:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLG
        ++HGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKR FLG
Subjt:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLG

XP_004143747.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Cucumis sativus]

1.5e-22

96.43

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Query:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLGV
        ++HGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLGV
Subjt:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLGV

XP_008465711.1 PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Cucumis melo]

1.5e-22

96.43

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Query:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLGV
        ++HGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLGV
Subjt:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLGV

XP_038907229.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Benincasa hispida]

5.6e-22

96.36

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Query:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLG
        ++HGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLG
Subjt:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQG1 Uncharacterized protein

2.0e-41

53.27

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Query:  TLYSPKVTENPFVEGIDWSPILLREDELVVPFTIEEIKKIVLSCNGNNAPGANRQILDQALIANEAIEEYRSKKLEGVTLKFDFEKANVKYSILINGVVP
        TL  PKVTENPFVEGIDWSPIL RED LVVPFTIEEIKKIVLSCNGNNAPGANR  +                          +EK              
Subjt:  TLYSPKVTENPFVEGIDWSPILLREDELVVPFTIEEIKKIVLSCNGNNAPGANRQILDQALIANEAIEEYRSKKLEGVTLKFDFEKANVKYSILINGVVP

Query:  KGAIQASKGLRWGDPLSLSLFLFLLVVDILSQLISVEPFKIGRDEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLGV
                                                     HGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLGV
Subjt:  KGAIQASKGLRWGDPLSLSLFLFLLVVDILSQLISVEPFKIGRDEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLGV

A0A1S3CPI1 U3 small nucleolar ribonucleoprotein protein IMP4

7.2e-23

96.43

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Query:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLGV
        ++HGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLGV
Subjt:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLGV

A0A5D3BJ53 U3 small nucleolar ribonucleoprotein IMP4

7.2e-23

96.43

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Query:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLGV
        ++HGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLGV
Subjt:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLGV

A0A6J1FFE4 U3 small nucleolar ribonucleoprotein protein IMP4

1.4e-21

94.55

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Query:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLG
        ++HGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKR FLG
Subjt:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLG

A0A6J1K117 U3 small nucleolar ribonucleoprotein protein IMP4

1.1e-20

92.73

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Query:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLG
        ++ GGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKR FLG
Subjt:  DEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLG

SwissProt top hits

e value

%identity

Alignment

O62518 Brix domain-containing protein ZK795.3

2.2e-08

55.1

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Query:  IELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRDFLGV
        +EL E GPRFEL+ YQIKLGT++    A++EWV+R Y  T +KR FL +
Subjt:  IELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRDFLGV

P53941 U3 small nucleolar ribonucleoprotein protein IMP4

6.3e-08

41.67

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Query:  KSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFL
        + +E+ E+GPRFE+RL++++LGT++  +A  EW +R +++T  K+D+L
Subjt:  KSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFL

Q6BYD9 U3 small nucleolar ribonucleoprotein protein IMP4

4.8e-08

41.67

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Query:  SIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLG
        ++EL E+GPRFE+RLY+++LG +D  +++ EW +R +++T  ++++LG
Subjt:  SIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLG

Q6C804 U3 small nucleolar ribonucleoprotein protein IMP4

4.8e-08

45.83

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Query:  KSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFL
        + +EL E+GPRFE+RLY ++LGT++  +A  EW +  +M+T  K+D+L
Subjt:  KSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFL

Q755T8 U3 small nucleolar ribonucleoprotein protein IMP4

1.8e-07

43.48

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Query:  IELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFL
        +EL E+GPRFE++LY++ LGT++  +A  EW +R +++T  ++D+L
Subjt:  IELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G63780.1 Ribosomal RNA processing Brix domain protein

1.6e-19

80.77

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Query:  GGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLG
        GG KSIELKEIGPRFELRLYQ+KLGTV+Q EA+ EWVIRPYM T+KKR F+G
Subjt:  GGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLG

AT4G01560.1 Ribosomal RNA processing Brix domain protein

2.3e-05

38.33

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Query:  KIGRDEHGGAKSIE--LKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFL
        K  + + G  ++I+  L+E GPRF L+L  ++ GT D    + EWV +P M T+++R FL
Subjt:  KIGRDEHGGAKSIE--LKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFL

Sequences

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CDS sequence

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ATGGGGTTTGTACCAGTGATAGAAGAGGAAATTGAGGGGGAAATTTTGAAGTTTTTCTTTACTCTTTATAGCCCTAAGGTGACGGAGAATCCATTTGTAGAGGGTATTGA
TTGGAGCCCTATTTTGTTGAGGGAAGATGAGTTAGTGGTCCCTTTTACAATTGAGGAGATCAAGAAGATTGTCTTAAGTTGCAATGGCAACAACGCTCCTGGAGCTAACA
GACAGATTTTGGACCAAGCTTTGATTGCAAATGAAGCTATTGAGGAGTATAGATCGAAGAAGTTGGAGGGTGTTACGTTAAAGTTTGACTTTGAGAAAGCAAACGTTAAG
TATTCTATTCTCATCAATGGAGTAGTCCCAAAAGGGGCGATTCAAGCATCGAAGGGCCTTAGATGGGGTGATCCTTTGTCTTTGTCTTTGTTTTTGTTCTTATTGGTTGT
GGATATTCTAAGCCAGTTGATAAGTGTTGAGCCTTTTAAGATTGGTAGAGATGAACATGGAGGTGCCAAATCAATTGAGCTGAAGGAGATTGGTCCACGGTTTGAATTGC
GACTGTACCAGATAAAGTTAGGAACTGTGGACCAAACGGAAGCTCAGAATGAATGGGTGATTCGACCATATATGAAAACAACCAAGAAACGTGACTTCCTTGGTGTTTAA

mRNA sequence

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Protein sequence

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MGFVPVIEEEIEGEILKFFFTLYSPKVTENPFVEGIDWSPILLREDELVVPFTIEEIKKIVLSCNGNNAPGANRQILDQALIANEAIEEYRSKKLEGVTLKFDFEKANVK
YSILINGVVPKGAIQASKGLRWGDPLSLSLFLFLLVVDILSQLISVEPFKIGRDEHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRDFLGV

CSPI05G15680 (gene) of Cucumber (PI 183967) v1 genome