CuGenDBv2

Gene ID	CSPI05G15890
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic
Genome location	Chr5:17016819..17019260
RNA-Seq Expression	CSPI05G15890
Synteny	CSPI05G15890
Gene Ontology terms	GO:0010190 - cytochrome b6f complex assembly (biological process) GO:0009507 - chloroplast (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR021919 - Cofactor assembly of complex C subunit B, CCB1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0066087.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1 [Cucumis melo var. makuwa]

1.0e-93

97.27

Show/hide

Query:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV
        MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSED SKKEPNQIAGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLV
Subjt:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV

Query:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
        LTIT+PDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEI+VQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
Subjt:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ

XP_004143764.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucumis sativus]

1.3e-96

100

Show/hide

Query:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV
        MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV
Subjt:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV

Query:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
        LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
Subjt:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ

XP_008465491.1 PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucumis melo]

1.0e-93

97.27

Show/hide

Query:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV
        MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSED SKKEPNQIAGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLV
Subjt:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV

Query:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
        LTIT+PDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEI+VQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
Subjt:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ

XP_022938901.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita moschata]

3.1e-90

93.96

Show/hide

Query:  ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVL
        ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSE  SKK PNQ AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVL
Subjt:  ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVL

Query:  TITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
        TIT+PD GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDG LGEI+VQGDDQQ++QMRKEL+LSEKGMVYVKGIFEQ
Subjt:  TITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ

XP_038874658.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Benincasa hispida]

7.4e-92

95.08

Show/hide

Query:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV
        MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKT VSE  SKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV
Subjt:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV

Query:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
        LTIT+PDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDG LGEI+VQGDDQQ++QMRKEL+LSEKGMVYVKGIFEQ
Subjt:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KRU8 Uncharacterized protein

6.3e-97

100

Show/hide

Query:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV
        MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV
Subjt:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV

Query:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
        LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
Subjt:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ

A0A1S3CPE0 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic

5.0e-94

97.27

Show/hide

Query:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV
        MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSED SKKEPNQIAGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLV
Subjt:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV

Query:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
        LTIT+PDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEI+VQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
Subjt:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ

A0A5A7VG78 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1

5.0e-94

97.27

Show/hide

Query:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV
        MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSED SKKEPNQIAGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLV
Subjt:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV

Query:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
        LTIT+PDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEI+VQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
Subjt:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ

A0A6J1FEF5 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic

1.5e-90

93.96

Show/hide

Query:  ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVL
        ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSE  SKK PNQ AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVL
Subjt:  ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVL

Query:  TITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
        TIT+PD GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDG LGEI+VQGDDQQ++QMRKEL+LSEKGMVYVKGIFEQ
Subjt:  TITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ

A0A6J1JUD8 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic

1.7e-89

92.86

Show/hide

Query:  ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVL
        ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSE  SKK PNQ AGEILSFFTRNNF+VTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVL
Subjt:  ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVL

Query:  TITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
        TIT+PD GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIV EDG LGEI+VQGDDQQ++QMRKEL+LSEKGMVYVKGIFEQ
Subjt:  TITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ

SwissProt top hits

e value

%identity

Alignment

Q9LSE4 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic

4.7e-81

82.51

Show/hide

Query:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV
        +ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTFV  D  KKEP Q+AGEILSFFTR NF +TDRGETITFEG MVPSRGQAALLTFCTCISLASVGLV
Subjt:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV

Query:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
        LTIT PDFGNNWF++  LSPLAG YYW KASRKEEIKVKM+VG  GRL EIVVQGDD Q+++MRKEL+L+EKGMVYVKG+FE+
Subjt:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G26710.1 cofactor assembly of complex C

3.3e-82

82.51

Show/hide

Query:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV
        +ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTFV  D  KKEP Q+AGEILSFFTR NF +TDRGETITFEG MVPSRGQAALLTFCTCISLASVGLV
Subjt:  MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLV

Query:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ
        LTIT PDFGNNWF++  LSPLAG YYW KASRKEEIKVKM+VG  GRL EIVVQGDD Q+++MRKEL+L+EKGMVYVKG+FE+
Subjt:  LTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTAGTTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCTTATGGTCTCTTATCAAACGATCCGTCAAGTCCAAGGTTGTGAAGAAGACGTTCGTTAG
CGAAGATGGATCGAAGAAGGAGCCGAATCAGATTGCTGGAGAGATCTTGTCGTTCTTCACTCGGAATAATTTTCAAGTCACTGATAGAGGTGAAACCATAACGTTTGAAG
GAACGATGGTTCCGAGTCGAGGACAAGCGGCATTGTTGACATTCTGTACGTGCATTAGCTTGGCCAGTGTGGGACTTGTTCTGACCATAACATATCCAGATTTTGGCAAC
AATTGGTTTTGGCTGAGCAGCTTGAGTCCCCTGGCTGGAGCATATTACTGGGTGAAAGCATCAAGAAAGGAAGAAATCAAAGTTAAAATGATAGTTGGAGAAGATGGAAG
GTTGGGAGAGATTGTTGTTCAAGGAGATGACCAACAGATAGACCAAATGAGAAAGGAGCTTAAGTTGAGTGAGAAAGGCATGGTTTATGTCAAAGGTATTTTTGAACAAT
AA

mRNA sequence

Show/hide mRNA sequence

CCTCGCTGAGTCTGTCGGCTATTCCATGGCTAGTTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCTTATGGTCTCTTATCAAACGATCCGTCAAGTCCA
AGGTTGTGAAGAAGACGTTCGTTAGCGAAGATGGATCGAAGAAGGAGCCGAATCAGATTGCTGGAGAGATCTTGTCGTTCTTCACTCGGAATAATTTTCAAGTCACTGAT
AGAGGTGAAACCATAACGTTTGAAGGAACGATGGTTCCGAGTCGAGGACAAGCGGCATTGTTGACATTCTGTACGTGCATTAGCTTGGCCAGTGTGGGACTTGTTCTGAC
CATAACATATCCAGATTTTGGCAACAATTGGTTTTGGCTGAGCAGCTTGAGTCCCCTGGCTGGAGCATATTACTGGGTGAAAGCATCAAGAAAGGAAGAAATCAAAGTTA
AAATGATAGTTGGAGAAGATGGAAGGTTGGGAGAGATTGTTGTTCAAGGAGATGACCAACAGATAGACCAAATGAGAAAGGAGCTTAAGTTGAGTGAGAAAGGCATGGTT
TATGTCAAAGGTATTTTTGAACAATAATTATTAGTCTCTTTTTCTTTTCCCTTTTTTTCTTTCCTGCTTTACCATAGTTGAAGGCATCTTCATGAGTCCGTATATTCTTG
TT

Protein sequence

Show/hide protein sequence

MASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITYPDFGN
NWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ

CSPI05G15890 (gene) of Cucumber (PI 183967) v1 genome