; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G15960 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G15960
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr5:17104935..17105836
RNA-Seq ExpressionCSPI05G15960
SyntenyCSPI05G15960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042384.1 pol polyprotein [Cucumis melo var. makuwa]4.1e-4647.23Show/hide
Query:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKI-----------------------------DFKNTLRHKMKEFSLKNLIIQMRI
        KE+WD LQKKYD ++A SK Y V++YLRY++ DD+S+EAQS+E+QKI                             DFKNTLRHK KEFSL++LI ++RI
Subjt:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKI-----------------------------DFKNTLRHKMKEFSLKNLIIQMRI

Query:  EEETRKHDQKEEE-----------VKPDLKPKENKMKVNNRDLNNQKNSQKSHFRNTANMVEEKLVAMITSINVIGGSEGSWLDINASSH----------
        EEE RKHD+KEE            +KPDLK K NKMK  NR     +          AN++E++LVAMI+ +NVIG SEG WLD  AS H          
Subjt:  EEETRKHDQKEEE-----------VKPDLKPKENKMKVNNRDLNNQKNSQKSHFRNTANMVEEKLVAMITSINVIGGSEGSWLDINASSH----------

Query:  --------------------------LKFTSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT
                                  LKFTS KTL+LKEVLHT +I+KNLV GYLLNKA FTQTIGS LFT
Subjt:  --------------------------LKFTSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT

KAA0050409.1 hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa]2.5e-5149.45Show/hide
Query:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKI-----------------------------DFKNTLRHKMKEFSLKNLIIQMRI
        K++W+ LQKKYD ++A SK YAVS+YLRYQ+ DDRS+EAQS+E+QKI                             DFKNTLRHK KEFSL+NL  ++RI
Subjt:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKI-----------------------------DFKNTLRHKMKEFSLKNLIIQMRI

Query:  EEETRKHDQKEE-----------EVKPDLKPKENKMKVNNRDLNNQKNSQKSHFRNTANMVEEKLVAMITSINVIGGSEGSWLDINASSH----------
        EEE +KHD+KEE            +K DLKPK NKMK   +  N Q N Q +   + AN++E +LVAMI+ +NVIGGSEG WLD  AS H          
Subjt:  EEETRKHDQKEE-----------EVKPDLKPKENKMKVNNRDLNNQKNSQKSHFRNTANMVEEKLVAMITSINVIGGSEGSWLDINASSH----------

Query:  --------------------------LKFTSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT
                                  LKFTSGKTL++K+VLHTPKI+KNLV  YLLNKAGFTQTIGSNLFT
Subjt:  --------------------------LKFTSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT

KAA0059670.1 putative Polyprotein [Cucumis melo var. makuwa]2.6e-4852.48Show/hide
Query:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKIDFKNTLRHKMKEFSLKNLIIQMRIEEETRKHDQKEE-----------EVKPDL
        KE+WDVLQ KYDI++  SK Y VS+YLRYQ+ DD+S+E         DFKNTLRHK KE SLK+LI ++RIEEE RKH++KEE            +KPDL
Subjt:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKIDFKNTLRHKMKEFSLKNLIIQMRIEEETRKHDQKEE-----------EVKPDL

Query:  KPKENKMKVNNRDLNNQKNSQKSHFRNTANMVEEKLVAMITSINVIGGSEGSWLDINASSH------------------------------------LKF
        KPK NKMK   R+ N Q N Q    R+TAN++E++LVAMI+ +NVI G EG WLD  AS H                                    LKF
Subjt:  KPKENKMKVNNRDLNNQKNSQKSHFRNTANMVEEKLVAMITSINVIGGSEGSWLDINASSH------------------------------------LKF

Query:  TSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT
        TSGK L+LKEVLHT +I+KNLV  YLLNKAGFTQTIGS+LFT
Subjt:  TSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT

KAA0067915.1 putative Polyprotein [Cucumis melo var. makuwa]3.8e-4443.84Show/hide
Query:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKI-----------------------------DFKNTLRHKMKEFSLKNLIIQMRI
        KE+WD LQKKYD ++A  K YA+SQYLRYQ+ D++ +EAQS+E+QKI                             DFKNTLRHK KEF L++LI ++ I
Subjt:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKI-----------------------------DFKNTLRHKMKEFSLKNLIIQMRI

Query:  EEETRKHDQKEE-----------EVKPDLKPKENKMKVNNRDLNNQKNS---------------------QKSHFRNTANMVEEKLVAMITSINVIGGSE
        EEE RKHD+KEE            +K DLKPK NKMK  +   NN ++                       +SH    AN++E +LVAMI  +NVIGGSE
Subjt:  EEETRKHDQKEE-----------EVKPDLKPKENKMKVNNRDLNNQKNS---------------------QKSHFRNTANMVEEKLVAMITSINVIGGSE

Query:  GSWLDINASSH------------------------------------LKFTSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT
        G WLD  A  H                                    LKFT  K L+LKEVLHTPKI+KNLV  YLLNKAGFTQTIGS+LFT
Subjt:  GSWLDINASSH------------------------------------LKFTSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT

TYJ98000.1 hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa]6.1e-5048.71Show/hide
Query:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKI-----------------------------DFKNTLRHKMKEFSLKNLIIQMRI
        K++W+ LQKKYD ++A SK YAVS+YLRYQ+ DDRS+EAQS+E+QKI                             DFKNTLRHK KEFSL+NLI +++I
Subjt:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKI-----------------------------DFKNTLRHKMKEFSLKNLIIQMRI

Query:  EEETRKHDQKEE-----------EVKPDLKPKENKMKVNNRDLNNQKNSQKSHFRNTANMVEEKLVAMITSINVIGGSEGSWLDINASSH----------
        EEE +K D+K+E            +K DLKPK NKMK   +  N Q N Q +   + AN++E +LVAMI+ +NVIGGSEG WLD NAS H          
Subjt:  EEETRKHDQKEE-----------EVKPDLKPKENKMKVNNRDLNNQKNSQKSHFRNTANMVEEKLVAMITSINVIGGSEGSWLDINASSH----------

Query:  --------------------------LKFTSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT
                                  L+FTSGKTL+LK+V HTPKI+KNLV  YLLNKAGFTQTIGSNLFT
Subjt:  --------------------------LKFTSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT

TrEMBL top hitse value%identityAlignment
A0A5A7TG34 Pol polyprotein2.0e-4647.23Show/hide
Query:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKI-----------------------------DFKNTLRHKMKEFSLKNLIIQMRI
        KE+WD LQKKYD ++A SK Y V++YLRY++ DD+S+EAQS+E+QKI                             DFKNTLRHK KEFSL++LI ++RI
Subjt:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKI-----------------------------DFKNTLRHKMKEFSLKNLIIQMRI

Query:  EEETRKHDQKEEE-----------VKPDLKPKENKMKVNNRDLNNQKNSQKSHFRNTANMVEEKLVAMITSINVIGGSEGSWLDINASSH----------
        EEE RKHD+KEE            +KPDLK K NKMK  NR     +          AN++E++LVAMI+ +NVIG SEG WLD  AS H          
Subjt:  EEETRKHDQKEEE-----------VKPDLKPKENKMKVNNRDLNNQKNSQKSHFRNTANMVEEKLVAMITSINVIGGSEGSWLDINASSH----------

Query:  --------------------------LKFTSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT
                                  LKFTS KTL+LKEVLHT +I+KNLV GYLLNKA FTQTIGS LFT
Subjt:  --------------------------LKFTSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT

A0A5A7UA92 Uncharacterized protein1.2e-5149.45Show/hide
Query:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKI-----------------------------DFKNTLRHKMKEFSLKNLIIQMRI
        K++W+ LQKKYD ++A SK YAVS+YLRYQ+ DDRS+EAQS+E+QKI                             DFKNTLRHK KEFSL+NL  ++RI
Subjt:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKI-----------------------------DFKNTLRHKMKEFSLKNLIIQMRI

Query:  EEETRKHDQKEE-----------EVKPDLKPKENKMKVNNRDLNNQKNSQKSHFRNTANMVEEKLVAMITSINVIGGSEGSWLDINASSH----------
        EEE +KHD+KEE            +K DLKPK NKMK   +  N Q N Q +   + AN++E +LVAMI+ +NVIGGSEG WLD  AS H          
Subjt:  EEETRKHDQKEE-----------EVKPDLKPKENKMKVNNRDLNNQKNSQKSHFRNTANMVEEKLVAMITSINVIGGSEGSWLDINASSH----------

Query:  --------------------------LKFTSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT
                                  LKFTSGKTL++K+VLHTPKI+KNLV  YLLNKAGFTQTIGSNLFT
Subjt:  --------------------------LKFTSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT

A0A5A7VQD4 Putative Polyprotein1.9e-4443.84Show/hide
Query:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKI-----------------------------DFKNTLRHKMKEFSLKNLIIQMRI
        KE+WD LQKKYD ++A  K YA+SQYLRYQ+ D++ +EAQS+E+QKI                             DFKNTLRHK KEF L++LI ++ I
Subjt:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKI-----------------------------DFKNTLRHKMKEFSLKNLIIQMRI

Query:  EEETRKHDQKEE-----------EVKPDLKPKENKMKVNNRDLNNQKNS---------------------QKSHFRNTANMVEEKLVAMITSINVIGGSE
        EEE RKHD+KEE            +K DLKPK NKMK  +   NN ++                       +SH    AN++E +LVAMI  +NVIGGSE
Subjt:  EEETRKHDQKEE-----------EVKPDLKPKENKMKVNNRDLNNQKNS---------------------QKSHFRNTANMVEEKLVAMITSINVIGGSE

Query:  GSWLDINASSH------------------------------------LKFTSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT
        G WLD  A  H                                    LKFT  K L+LKEVLHTPKI+KNLV  YLLNKAGFTQTIGS+LFT
Subjt:  GSWLDINASSH------------------------------------LKFTSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT

A0A5D3BDS3 Uncharacterized protein3.0e-5048.71Show/hide
Query:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKI-----------------------------DFKNTLRHKMKEFSLKNLIIQMRI
        K++W+ LQKKYD ++A SK YAVS+YLRYQ+ DDRS+EAQS+E+QKI                             DFKNTLRHK KEFSL+NLI +++I
Subjt:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKI-----------------------------DFKNTLRHKMKEFSLKNLIIQMRI

Query:  EEETRKHDQKEE-----------EVKPDLKPKENKMKVNNRDLNNQKNSQKSHFRNTANMVEEKLVAMITSINVIGGSEGSWLDINASSH----------
        EEE +K D+K+E            +K DLKPK NKMK   +  N Q N Q +   + AN++E +LVAMI+ +NVIGGSEG WLD NAS H          
Subjt:  EEETRKHDQKEE-----------EVKPDLKPKENKMKVNNRDLNNQKNSQKSHFRNTANMVEEKLVAMITSINVIGGSEGSWLDINASSH----------

Query:  --------------------------LKFTSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT
                                  L+FTSGKTL+LK+V HTPKI+KNLV  YLLNKAGFTQTIGSNLFT
Subjt:  --------------------------LKFTSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT

A0A5D3DRT2 Putative Polyprotein1.2e-4852.48Show/hide
Query:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKIDFKNTLRHKMKEFSLKNLIIQMRIEEETRKHDQKEE-----------EVKPDL
        KE+WDVLQ KYDI++  SK Y VS+YLRYQ+ DD+S+E         DFKNTLRHK KE SLK+LI ++RIEEE RKH++KEE            +KPDL
Subjt:  KEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKIDFKNTLRHKMKEFSLKNLIIQMRIEEETRKHDQKEE-----------EVKPDL

Query:  KPKENKMKVNNRDLNNQKNSQKSHFRNTANMVEEKLVAMITSINVIGGSEGSWLDINASSH------------------------------------LKF
        KPK NKMK   R+ N Q N Q    R+TAN++E++LVAMI+ +NVI G EG WLD  AS H                                    LKF
Subjt:  KPKENKMKVNNRDLNNQKNSQKSHFRNTANMVEEKLVAMITSINVIGGSEGSWLDINASSH------------------------------------LKF

Query:  TSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT
        TSGK L+LKEVLHT +I+KNLV  YLLNKAGFTQTIGS+LFT
Subjt:  TSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAAGGAAATTTGGGATGTGCTGCAAAAGAAGTACGACATTGACAAAGCTGCATCTAAGAACTATGCAGTAAGCCAATACTTGCGGTACCAGGTGGTTGACGACAG
ATCAATAGAAGCCCAATCATATGAACTGCAGAAGATTGACTTTAAAAATACCCTGAGGCATAAAATGAAGGAGTTTTCTTTGAAGAACCTGATCATCCAGATGCGAATTG
AGGAGGAGACCCGCAAGCATGACCAGAAGGAGGAGGAGGTGAAACCAGACCTGAAGCCTAAAGAGAATAAGATGAAGGTGAATAATAGAGATCTCAACAACCAGAAGAAC
TCTCAGAAATCTCATTTCAGAAATACGGCGAACATGGTAGAAGAAAAATTAGTAGCTATGATCACATCAATAAATGTGATCGGGGGGTCTGAAGGTTCGTGGCTAGACAT
TAATGCATCAAGTCATTTGAAGTTCACCTCCGGCAAGACACTCATTCTAAAGGAAGTCTTGCACACTCCTAAAATTCAAAAGAACCTAGTCTTGGGCTATCTTCTCAACA
AGGCGGGCTTCACTCAAACTATAGGATCTAACCTCTTTACTTCTCAACAAGGCGAACAACAGATGAGATGTTCAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGAAGGAAATTTGGGATGTGCTGCAAAAGAAGTACGACATTGACAAAGCTGCATCTAAGAACTATGCAGTAAGCCAATACTTGCGGTACCAGGTGGTTGACGACAG
ATCAATAGAAGCCCAATCATATGAACTGCAGAAGATTGACTTTAAAAATACCCTGAGGCATAAAATGAAGGAGTTTTCTTTGAAGAACCTGATCATCCAGATGCGAATTG
AGGAGGAGACCCGCAAGCATGACCAGAAGGAGGAGGAGGTGAAACCAGACCTGAAGCCTAAAGAGAATAAGATGAAGGTGAATAATAGAGATCTCAACAACCAGAAGAAC
TCTCAGAAATCTCATTTCAGAAATACGGCGAACATGGTAGAAGAAAAATTAGTAGCTATGATCACATCAATAAATGTGATCGGGGGGTCTGAAGGTTCGTGGCTAGACAT
TAATGCATCAAGTCATTTGAAGTTCACCTCCGGCAAGACACTCATTCTAAAGGAAGTCTTGCACACTCCTAAAATTCAAAAGAACCTAGTCTTGGGCTATCTTCTCAACA
AGGCGGGCTTCACTCAAACTATAGGATCTAACCTCTTTACTTCTCAACAAGGCGAACAACAGATGAGATGTTCAAATTAA
Protein sequenceShow/hide protein sequence
MTKEIWDVLQKKYDIDKAASKNYAVSQYLRYQVVDDRSIEAQSYELQKIDFKNTLRHKMKEFSLKNLIIQMRIEEETRKHDQKEEEVKPDLKPKENKMKVNNRDLNNQKN
SQKSHFRNTANMVEEKLVAMITSINVIGGSEGSWLDINASSHLKFTSGKTLILKEVLHTPKIQKNLVLGYLLNKAGFTQTIGSNLFTSQQGEQQMRCSN