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CSPI05G16290 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G16290
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr5:17476554..17477875
RNA-Seq ExpressionCSPI05G16290
SyntenyCSPI05G16290
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033855.1 ty3-gypsy retroelement transposase [Cucumis melo var. makuwa]1.1e-2458.72Show/hide
Query:  QDFLILSSFTQDNMVPMPALQQSKNVNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSET
        ++F I+    ++  V   A++    V +VE  +  LSIN V GL NPGTMKVKGKVKNEEVVVLIDCGATHNFIF+KLVT LNL LK TT YGVI+G   
Subjt:  QDFLILSSFTQDNMVPMPALQQSKNVNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSET

Query:  AIKGKGVWQ
         +KGKG+++
Subjt:  AIKGKGVWQ
KAA0062046.1 ty3-gypsy retroelement transposase [Cucumis melo var. makuwa]6.9e-2772.04Show/hide
Query:  VNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSETAIKGKGVWQSRSI---DW
        V +VEN + ELSINSV GL NPGTMKVKGKVK+E+VVVLIDCGATHNFI KKLVT LNLPLK TT Y VILGS  AIKGKG++    +   DW
Subjt:  VNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSETAIKGKGVWQSRSI---DW
KAA0062226.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-2678.05Show/hide
Query:  VNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSETAIKGKGV
        V +V+N + ELSINSV GL NPGTMKVKGKVK+E+VVVLIDCGATHNFI +KLVT LNLPLK TT YGVILGS  AIKGKG+
Subjt:  VNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSETAIKGKGV
TYK01237.1 ty3-gypsy retroelement transposase [Cucumis melo var. makuwa]1.1e-2458.72Show/hide
Query:  QDFLILSSFTQDNMVPMPALQQSKNVNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSET
        ++F I+    ++  V   A++    V +VE  +  LSIN V GL NPGTMKVKGKVKNEEVVVLIDCGATHNFIF+KLVT LNL LK TT YGVI+G   
Subjt:  QDFLILSSFTQDNMVPMPALQQSKNVNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSET

Query:  AIKGKGVWQ
         +KGKG+++
Subjt:  AIKGKGVWQ
TYK04974.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-2576.83Show/hide
Query:  VNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSETAIKGKGV
        V +VEN + ELSINS+ GL NPG MKVKGKVK+E+VVVLIDCGATHNFI KKLVT LNLPLK TT Y VILGS  AIKGKG+
Subjt:  VNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSETAIKGKGV
TrEMBL top hitse value%identityAlignment
A0A5A7SXE3 Ty3-gypsy retroelement transposase5.3e-2558.72Show/hide
Query:  QDFLILSSFTQDNMVPMPALQQSKNVNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSET
        ++F I+    ++  V   A++    V +VE  +  LSIN V GL NPGTMKVKGKVKNEEVVVLIDCGATHNFIF+KLVT LNL LK TT YGVI+G   
Subjt:  QDFLILSSFTQDNMVPMPALQQSKNVNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSET

Query:  AIKGKGVWQ
         +KGKG+++
Subjt:  AIKGKGVWQ
A0A5A7V6C8 Ty3-gypsy retroelement transposase3.3e-2772.04Show/hide
Query:  VNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSETAIKGKGVWQSRSI---DW
        V +VEN + ELSINSV GL NPGTMKVKGKVK+E+VVVLIDCGATHNFI KKLVT LNLPLK TT Y VILGS  AIKGKG++    +   DW
Subjt:  VNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSETAIKGKGVWQSRSI---DW
A0A5A7V723 Ty3/gypsy retrotransposon protein1.3e-2678.05Show/hide
Query:  VNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSETAIKGKGV
        V +V+N + ELSINSV GL NPGTMKVKGKVK+E+VVVLIDCGATHNFI +KLVT LNLPLK TT YGVILGS  AIKGKG+
Subjt:  VNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSETAIKGKGV
A0A5D3BPJ9 Ty3-gypsy retroelement transposase5.3e-2558.72Show/hide
Query:  QDFLILSSFTQDNMVPMPALQQSKNVNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSET
        ++F I+    ++  V   A++    V +VE  +  LSIN V GL NPGTMKVKGKVKNEEVVVLIDCGATHNFIF+KLVT LNL LK TT YGVI+G   
Subjt:  QDFLILSSFTQDNMVPMPALQQSKNVNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSET

Query:  AIKGKGVWQ
         +KGKG+++
Subjt:  AIKGKGVWQ
A0A5D3C129 Ty3-gypsy retrotransposon protein6.3e-2676.83Show/hide
Query:  VNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSETAIKGKGV
        V +VEN + ELSINS+ GL NPG MKVKGKVK+E+VVVLIDCGATHNFI KKLVT LNLPLK TT Y VILGS  AIKGKG+
Subjt:  VNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSETAIKGKGV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29750.1 Eukaryotic aspartyl protease family protein1.3e-0440.35Show/hide
Query:  MKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSETAIKGKG
        M+  G + + +VVV ID GAT NFI  +L  +L LP   T    V+LG    I+  G
Subjt:  MKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSETAIKGKG
AT3G30770.1 Eukaryotic aspartyl protease family protein4.6e-0542.11Show/hide
Query:  MKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSETAIKGKG
        M+  G +   +VVV+ID GAT+NFI  +L   L LP  TT    V+LG    I+  G
Subjt:  MKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSETAIKGKG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGATTTCCTAATTCTTTCTTCCTTCACACAAGATAATATGGTACCCATGCCTGCATTGCAACAAAGCAAAAATGTGAATTCTGTGGAGAATTTTGACTTTGAGTT
ATCTATCAACTCAGTGGCGGGTCTAGACAATCCTGGAACCATGAAAGTGAAGGGAAAAGTGAAGAATGAGGAGGTAGTAGTATTAATTGACTGTGGAGCTACCCACAATT
TCATATTTAAAAAATTGGTGACTGCATTGAATCTTCCTTTGAAAACAACTACAACTTATGGAGTGATCCTTGGGTCAGAGACGGCCATCAAAGGGAAGGGTGTGTGGCAA
AGTAGAAGTATTGATTGGTGA
mRNA sequenceShow/hide mRNA sequence
GTATTTGATAATTACTCAAAGTAGCTTTTAGAAGACTTTACAATGTATTTTAAACAATTTTGTATCAGAAGACTTTAAATGTTTTAGTCAATTCAAATAGAAACTTAAAC
AATGATTGGTGGCCCCCAAGGAGACCTATTCTAACCACTGCTTCTATTCTCTTACCTTCATTATTCAACCTTCTTTTACAAACCAAGACTTTATTAATATTTGGATGCAA
CTAATACTTATCTGCTTTCCTACAACATTATTTTTCCTCAAATCAAGAGACAATCTTGTTATACATAAAATATCAAGACATAGTTCCATTATTACTAAATATTAATAAAA
ACAGATCACCAAACCCAACTATAGATACACGAAAATGTATGGTCATTGCTATTCTTCATTCCATGGCTGTAAAGAGAACAATAATCACAATACAGTGAACGAGTATTTTG
GTAGAGCTCATGAAAAGAAAAAAGTTGTGTACTGGAAATTATTATCGTCAATGCATACCCATATTTAGGATCTGTTCGAATGCAAGATTTCCTAATTCTTTCTTCCTTCA
CACAAGATAATATGGTACCCATGCCTGCATTGCAACAAAGCAAAAATGTGAATTCTGTGGAGAATTTTGACTTTGAGTTATCTATCAACTCAGTGGCGGGTCTAGACAAT
CCTGGAACCATGAAAGTGAAGGGAAAAGTGAAGAATGAGGAGGTAGTAGTATTAATTGACTGTGGAGCTACCCACAATTTCATATTTAAAAAATTGGTGACTGCATTGAA
TCTTCCTTTGAAAACAACTACAACTTATGGAGTGATCCTTGGGTCAGAGACGGCCATCAAAGGGAAGGGTGTGTGGCAAAGTAGAAGTATTGATTGGTGATGGGAAGGTT
ATTGATAGTTTATTACCTTTAGAATTGGGAGGAGTGGATGTGATTCTTGGAATGCAGTGATTACATTCTTTAGGTGTAACTGAAGTGGATTGGAGGGAAGTTAGTTATGA
CTTTTCAGCATAATGGAAAGAAGATTACAATCAAAGGTGATCCTAGCTTAATGAAGACAAGGGTTAGTTTGAAACATATGATGAAGACTTGGAATAATGAAGATTAGGGT
TATTTAATAGAGTGTCGAGCCTTGCACAGTAATTTATCTATAGAAGAAATGTACAATGAGGAGATTACACCTACAATTGATAATTCCCTACCATCCCTGTTAACTAAGTT
TGATGATGTATGTAGTTGGCCCGAGACATTACCACCAAAACGAGGGATTGAACACCATATTCATCTCAAACAAGGGACAGATGCAGTTAACGTGCTGCCATATAGATATG
CA
Protein sequenceShow/hide protein sequence
MQDFLILSSFTQDNMVPMPALQQSKNVNSVENFDFELSINSVAGLDNPGTMKVKGKVKNEEVVVLIDCGATHNFIFKKLVTALNLPLKTTTTYGVILGSETAIKGKGVWQ
SRSIDW