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CSPI05G16400 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G16400
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr5:17663183..17663835
RNA-Seq ExpressionCSPI05G16400
SyntenyCSPI05G16400
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011658449.1 uncharacterized protein LOC105436008 [Cucumis sativus]3.8e-6678.65Show/hide
Query:  MASISQQTKENGGMQILYSMLTPHNYTVWTIKAEAILDAQGVWES------------KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSER
        MAS+SQQTKENG M I Y ML PHNYT+WTIK EAILD Q VWE+            KDKK   YILQCI EDVLLQIAKKK+AKEIWD+LKTRYLGSER
Subjt:  MASISQQTKENGGMQILYSMLTPHNYTVWTIKAEAILDAQGVWES------------KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSER

Query:  VKMARVQTLKSEFNVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLETI
        VKMARV  LKSEFNVLRMKETETIDEFAGKIS LASKFTTLGVALEDSSLVKKLLDSVP+KYL  V  IEQFQDLET+
Subjt:  VKMARVQTLKSEFNVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLETI

XP_031737549.1 uncharacterized protein LOC116402439 [Cucumis sativus]1.4e-7687.64Show/hide
Query:  MASISQQTKENGGMQILYSMLTPHNYTVWTIKAEAILDAQGVWES------------KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSER
        MASISQQTKENGGM ILYSMLTPHNYTVWTIKAEAILDAQGV E+            KDKK R+YILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSER
Subjt:  MASISQQTKENGGMQILYSMLTPHNYTVWTIKAEAILDAQGVWES------------KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSER

Query:  VKMARVQTLKSEFNVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLETI
        VKMARVQTLKSEF+VLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVP+KYLP V GIEQFQDLET+
Subjt:  VKMARVQTLKSEFNVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLETI

XP_031741709.1 uncharacterized protein LOC116403904 [Cucumis sativus]2.2e-6684.66Show/hide
Query:  MQILYSMLTPHNYTVWTIKAEAILDAQGVWES------------KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEF
        M ILY MLTPHNYTVWTIKAEAILDAQGVWE+            KDKKV AYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSE+VKMARVQTLKSEF
Subjt:  MQILYSMLTPHNYTVWTIKAEAILDAQGVWES------------KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEF

Query:  NVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLE
        NVLRMKETET+DEF+GKISGLASKFTTLGVALEDSSLVKKLLD VP+KYL  V  IEQFQDLE
Subjt:  NVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLE

XP_031741713.1 uncharacterized protein LOC116403908 [Cucumis sativus]2.0e-6784.24Show/hide
Query:  MQILYSMLTPHNYTVWTIKAEAILDAQGVWES------------KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEF
        M ILY MLTPHNYTVWTIKAEAIL+AQGVWE+            KDKK RAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEF
Subjt:  MQILYSMLTPHNYTVWTIKAEAILDAQGVWES------------KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEF

Query:  NVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLETI
        NVLRMKE ETIDEF GKISGLASKFTTL VALEDSSLV KLLDSVP+KYLP V GI+QFQDLET+
Subjt:  NVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLETI

XP_031745073.1 uncharacterized protein LOC116405251 [Cucumis sativus]3.4e-7585.96Show/hide
Query:  MASISQQTKENGGMQILYSMLTPHNYTVWTIKAEAILDAQGVWES------------KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSER
        M S SQQTKENGGM ILY MLTPHNYTVWTIKAEAILDAQGVWE+            KDKK  AYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSER
Subjt:  MASISQQTKENGGMQILYSMLTPHNYTVWTIKAEAILDAQGVWES------------KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSER

Query:  VKMARVQTLKSEFNVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLETI
        VKMARVQTLK EFNVLRMKETE IDEFAGKISGLASKFTTLGVAL+DSSLVKKLLDSVP+KYLP VAGIEQFQDLET+
Subjt:  VKMARVQTLKSEFNVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLETI

TrEMBL top hitse value%identityAlignment
A0A251VAV7 Putative zinc finger, CCHC-type1.8e-4554.24Show/hide
Query:  ASISQQTKENGGMQILYSMLTPHNYTVWTIKAEAILDAQGVWES------------KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSERV
        A+ S   KE   + +    LT  NYT W IK EA++DAQG+WES            K+K  RA+I Q IPEDVLLQ+AKKKTAKEIW+SLKTRY+G+ERV
Subjt:  ASISQQTKENGGMQILYSMLTPHNYTVWTIKAEAILDAQGVWES------------KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSERV

Query:  KMARVQTLKSEFNVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLETI
        + AR+ TL SEF  L+ K+ E+ID+FAGK+SGL SK+ +LG  LED  LV+KLLD+VP++YL  VA +EQ+ D++++
Subjt:  KMARVQTLKSEFNVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLETI

A0A5A7SWG6 Uncharacterized protein1.7e-4890.35Show/hide
Query:  KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDS
        KDK  RAYILQCIP+DVLLQIAKKKTAKEIWDSLK +YLGSERVKMARVQTLK EF+VL+MKETETIDEFAGKISGLASKF+TLGVALEDSSLVKKLLDS
Subjt:  KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDS

Query:  VPNKYLPFVAGIEQ
        VPNKYLP +AGIEQ
Subjt:  VPNKYLPFVAGIEQ

A0A5N6MA89 Uncharacterized protein9.4e-4758.24Show/hide
Query:  KENGGMQILYSMLTPHNYTVWTIKAEAILDAQGVWES------------KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSERVKMARVQT
        KE G + +    LT  NYT W+IK EAI+DAQG+WES            K K  RA++ Q IPEDVLLQ+AKKKTAKE+W+SLK RYLG++RV+ AR+ T
Subjt:  KENGGMQILYSMLTPHNYTVWTIKAEAILDAQGVWES------------KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSERVKMARVQT

Query:  LKSEFNVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLETI
        LKSEF+ LRM+ETE+IDE+AGK+S + SK ++LG  LEDS +V+KLLD+VP+KYL  VA IEQ  DL+T+
Subjt:  LKSEFNVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLETI

A0A5N6NYJ8 CCHC-type domain-containing protein1.6e-4653.37Show/hide
Query:  MASISQQTKENGGMQILYSMLTPHNYTVWTIKAEAILDAQGVWES------------KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSER
        +A+ S   K+   + +    LT  NYT W IK EA++DAQG+WES            K+K  RA+I Q IPEDVLLQ+AKKKTAKEIWDSLK RY+G++R
Subjt:  MASISQQTKENGGMQILYSMLTPHNYTVWTIKAEAILDAQGVWES------------KDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSER

Query:  VKMARVQTLKSEFNVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLETI
        V+ AR+ TLK+EF +L+MKE E++DEFAGK++G+ +K+ +LG  ++D  LV+KLLDSVP+KYL  VA IEQ+ D++T+
Subjt:  VKMARVQTLKSEFNVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLETI

A0A5N6P849 Uncharacterized protein1.0e-4553.93Show/hide
Query:  MASISQQTKENGGMQILYSMLTPHNYTVWTIKAEAILDAQGVW------------ESKDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSER
        MA  +   KE+  M +   +LT  NYT W IK EAILDAQG+W            E K K  RA++ Q IPEDVLLQ++KKKTA+E+W+SLK RYLG+ER
Subjt:  MASISQQTKENGGMQILYSMLTPHNYTVWTIKAEAILDAQGVW------------ESKDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSER

Query:  VKMARVQTLKSEFNVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLETI
        V+ AR+ TL+SEF  LRMK+ ETIDE+ GK+SG+ SK ++LG  L DS LV+KL D+VP+K++P VA IEQ+ DL+++
Subjt:  VKMARVQTLKSEFNVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLETI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCATCTCGCAGCAAACAAAGGAGAATGGTGGAATGCAGATTCTCTACTCGATGTTAACTCCACACAACTACACGGTGTGGACGATAAAGGCAGAAGCAATCCT
CGATGCCCAAGGAGTTTGGGAATCAAAAGATAAGAAGGTGCGTGCATACATTCTCCAATGCATCCCGGAAGATGTGCTTCTACAAATCGCTAAGAAGAAGACCGCAAAGG
AAATATGGGATAGTCTCAAGACAAGGTACTTGGGCAGTGAGCGGGTGAAGATGGCGAGAGTTCAAACCTTGAAGAGTGAGTTTAATGTTCTTCGGATGAAGGAAACCGAG
ACGATCGATGAGTTCGCAGGAAAAATCAGCGGATTAGCAAGCAAGTTCACCACCCTCGGGGTTGCACTTGAGGATTCATCATTGGTCAAGAAGCTCCTCGATTCCGTCCC
CAACAAATATCTTCCCTTTGTCGCCGGAATCGAGCAATTCCAAGATCTCGAAACCATAATGGAAAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGCATCTCGCAGCAAACAAAGGAGAATGGTGGAATGCAGATTCTCTACTCGATGTTAACTCCACACAACTACACGGTGTGGACGATAAAGGCAGAAGCAATCCT
CGATGCCCAAGGAGTTTGGGAATCAAAAGATAAGAAGGTGCGTGCATACATTCTCCAATGCATCCCGGAAGATGTGCTTCTACAAATCGCTAAGAAGAAGACCGCAAAGG
AAATATGGGATAGTCTCAAGACAAGGTACTTGGGCAGTGAGCGGGTGAAGATGGCGAGAGTTCAAACCTTGAAGAGTGAGTTTAATGTTCTTCGGATGAAGGAAACCGAG
ACGATCGATGAGTTCGCAGGAAAAATCAGCGGATTAGCAAGCAAGTTCACCACCCTCGGGGTTGCACTTGAGGATTCATCATTGGTCAAGAAGCTCCTCGATTCCGTCCC
CAACAAATATCTTCCCTTTGTCGCCGGAATCGAGCAATTCCAAGATCTCGAAACCATAATGGAAAGCTAG
Protein sequenceShow/hide protein sequence
MASISQQTKENGGMQILYSMLTPHNYTVWTIKAEAILDAQGVWESKDKKVRAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLRMKETE
TIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPNKYLPFVAGIEQFQDLETIMES