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CSPI05G16640 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G16640
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRRM domain-containing protein
Genome locationChr5:17948198..17952639
RNA-Seq ExpressionCSPI05G16640
SyntenyCSPI05G16640
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040563.1 glutamic acid-rich protein-like [Cucumis melo var. makuwa]1.4e-4784.43Show/hide
Query:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFF--------DEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYI
        MGFPVFA+KRLGKG IALT+PSDS I FDEFF        DEDEDNFQDED+ILLPLKNT+EWHAARPRGFGEGKVYDTSIED LLQEMEQIREAQAA I
Subjt:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFF--------DEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYI

Query:  NKLKDQSSSNPNSSRNVVEIAA
        NKLK+QSSS PNSSRNVVEIAA
Subjt:  NKLKDQSSSNPNSSRNVVEIAA

KAE8648511.1 hypothetical protein Csa_008404 [Cucumis sativus]1.1e-5296.46Show/hide
Query:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFFDEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYINKLKDQSS
        MGFPVFAVKRLGKG IALTEPSDS IGFDEFFDE EDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAA INKLKDQSS
Subjt:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFFDEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYINKLKDQSS

Query:  SNPNSSRNVVEIA
        SNPNSSRNVVEIA
Subjt:  SNPNSSRNVVEIA

KAE8648512.1 hypothetical protein Csa_008160, partial [Cucumis sativus]4.1e-5295.58Show/hide
Query:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFFDEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYINKLKDQSS
        MGFPVFAVKRLGKG IALTEPSDS IGFDEFFDE EDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAA INKLKDQS 
Subjt:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFFDEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYINKLKDQSS

Query:  SNPNSSRNVVEIA
        SNPNSSRNVVEIA
Subjt:  SNPNSSRNVVEIA

XP_011655304.2 uncharacterized protein LOC105435514 [Cucumis sativus]4.1e-5295.58Show/hide
Query:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFFDEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYINKLKDQSS
        MGFPVFAVKRLGKG IALTEPSDS IGFDEFFDE EDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAA INKLKDQS 
Subjt:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFFDEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYINKLKDQSS

Query:  SNPNSSRNVVEIA
        SNPNSSRNVVEIA
Subjt:  SNPNSSRNVVEIA

XP_031741253.1 uncharacterized protein LOC101210443 [Cucumis sativus]4.4e-5490.32Show/hide
Query:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFFDEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYINKLKDQSS
        MGFPVFAVKRLGKG IALTEPSDS IGFDEFFDE EDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAA INKLKDQSS
Subjt:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFFDEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYINKLKDQSS

Query:  SNPNSSRNVVEIAAKRNITFRKCV
        SNPNSSRNVVEIAA   ++   CV
Subjt:  SNPNSSRNVVEIAAKRNITFRKCV

TrEMBL top hitse value%identityAlignment
A0A0A0KQN3 Uncharacterized protein2.1e-5490.32Show/hide
Query:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFFDEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYINKLKDQSS
        MGFPVFAVKRLGKG IALTEPSDS IGFDEFFDE EDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAA INKLKDQSS
Subjt:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFFDEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYINKLKDQSS

Query:  SNPNSSRNVVEIAAKRNITFRKCV
        SNPNSSRNVVEIAA   ++   CV
Subjt:  SNPNSSRNVVEIAAKRNITFRKCV

A0A0A0KS07 Uncharacterized protein2.0e-5295.58Show/hide
Query:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFFDEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYINKLKDQSS
        MGFPVFAVKRLGKG IALTEPSDS IGFDEFFDE EDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAA INKLKDQS 
Subjt:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFFDEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYINKLKDQSS

Query:  SNPNSSRNVVEIA
        SNPNSSRNVVEIA
Subjt:  SNPNSSRNVVEIA

A0A1S3CPG6 uncharacterized protein LOC1035033173.3e-4783.61Show/hide
Query:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFF--------DEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYI
        MGFPVFA+KRLGKG IALT+PSDS I FDEFF        DEDEDNFQDED+ILLPLKNT+EWHAARPRGFGEGKVYDTSIED LLQEMEQIREAQAA I
Subjt:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFF--------DEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYI

Query:  NKLKDQSSSNPNSSRNVVEIAA
        NKLK+Q SS PNSSRNVVEIAA
Subjt:  NKLKDQSSSNPNSSRNVVEIAA

A0A5D3C5E5 Glutamic acid-rich protein-like6.7e-4884.43Show/hide
Query:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFF--------DEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYI
        MGFPVFA+KRLGKG IALT+PSDS I FDEFF        DEDEDNFQDED+ILLPLKNT+EWHAARPRGFGEGKVYDTSIED LLQEMEQIREAQAA I
Subjt:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFF--------DEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYI

Query:  NKLKDQSSSNPNSSRNVVEIAA
        NKLK+QSSS PNSSRNVVEIAA
Subjt:  NKLKDQSSSNPNSSRNVVEIAA

A0A6J1KJD4 uncharacterized protein LOC1114937281.2e-2860.31Show/hide
Query:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFFDEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYINKLKDQSS
        M FPVF++K+ GKG ++LT  SDS I FD   DED D     D++LLPL N +EW AARPRGFGEGK YDTSIE+ LLQE+EQ R+AQAA INKLK Q  
Subjt:  MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFFDEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYINKLKDQSS

Query:  SNPNSSRNVVEIAAKR--NITFRKCVSRFPK
        SNPNSSRNVV+  A    N   R  V   PK
Subjt:  SNPNSSRNVVEIAAKR--NITFRKCVSRFPK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G70200.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.5e-1539.26Show/hide
Query:  GFPVFAVKRLGKGRIALTEPSDSHIGFD----EFFDEDEDNFQDEDD-ILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYINKLK
        GF  FAV +   G   + E  D     D    EF  EDE   ++ED+   LP+   K+W   +PRGFG GK Y+T IED LL E+EQ  +AQAA +NKLK
Subjt:  GFPVFAVKRLGKGRIALTEPSDSHIGFD----EFFDEDEDNFQDEDD-ILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYINKLK

Query:  DQSSSNPNSSR--NVVEIAAKRNITFRKCVSRFPK
        +    +    R  N+++   +  I FR  V+  PK
Subjt:  DQSSSNPNSSR--NVVEIAAKRNITFRKCVSRFPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTTTCCTGTTTTTGCGGTGAAGAGGTTGGGGAAAGGTCGCATTGCCCTCACTGAGCCAAGTGATTCCCACATTGGCTTTGATGAATTTTTCGATGAGGATGAGGA
TAATTTTCAGGACGAGGATGATATTCTTTTGCCGTTAAAGAACACGAAAGAGTGGCATGCGGCGAGGCCTCGTGGATTTGGAGAAGGGAAGGTGTATGATACTTCGATTG
AAGACAACTTGCTACAAGAAATGGAGCAGATTAGGGAAGCTCAAGCTGCTTATATCAATAAGCTCAAGGATCAATCTTCTTCTAATCCCAACTCTAGTAGAAATGTCGTA
GAGATAGCAGCAAAAAGGAATATAACTTTTAGGAAATGTGTAAGCAGATTTCCAAAATACCCCTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTTTCCTGTTTTTGCGGTGAAGAGGTTGGGGAAAGGTCGCATTGCCCTCACTGAGCCAAGTGATTCCCACATTGGCTTTGATGAATTTTTCGATGAGGATGAGGA
TAATTTTCAGGACGAGGATGATATTCTTTTGCCGTTAAAGAACACGAAAGAGTGGCATGCGGCGAGGCCTCGTGGATTTGGAGAAGGGAAGGTGTATGATACTTCGATTG
AAGACAACTTGCTACAAGAAATGGAGCAGATTAGGGAAGCTCAAGCTGCTTATATCAATAAGCTCAAGGATCAATCTTCTTCTAATCCCAACTCTAGTAGAAATGTCGTA
GAGATAGCAGCAAAAAGGAATATAACTTTTAGGAAATGTGTAAGCAGATTTCCAAAATACCCCTCATGATATTTGATATTTGACGTTGACAAGGTGGAGCCATGGATGGA
TATGCACTTTTTAGAAGCTTTATAGGCTATGGATAGGCTTCTTGAGATGGGACTTATTTTAATTAAAGGCTCTGGATCGACGTATGCCTCTGCCACTCTAGTTGGAATAT
GTCAATCGTCAATTATCACCCTTGTAAGACATGCAGGAGCAGGAGATTGTTTGAGTTGAAGGCAAGTTTTGCATTTCTT
Protein sequenceShow/hide protein sequence
MGFPVFAVKRLGKGRIALTEPSDSHIGFDEFFDEDEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAAYINKLKDQSSSNPNSSRNVV
EIAAKRNITFRKCVSRFPKYPS