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CSPI05G16680 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G16680
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationChr5:17979393..17980153
RNA-Seq ExpressionCSPI05G16680
SyntenyCSPI05G16680
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042492.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.2e-1457.32Show/hide
Query:  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITDPPSDPAGTISTPSSDLESSTSPPIVDQLKQVSIVDLEK
        K SNKV+ +LSKLEL D   YHRWS+K+L FF+++EV+YVL  DP SDP+ TI TP +   +  S  +VDQ+ +VSIVDLEK
Subjt:  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITDPPSDPAGTISTPSSDLESSTSPPIVDQLKQVSIVDLEK

KAA0043125.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.6e-1358.62Show/hide
Query:  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSDLESSTSP----PIVDQLKQVSIVDLEK
        K SNK+  +LSKLE LD   YHRWS+ +L FF+Q+EVDYVL TD P SDP+ T ST SSD ESST P     I DQ+K   ++DLEK
Subjt:  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSDLESSTSP----PIVDQLKQVSIVDLEK

KAA0045143.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.5e-1358.62Show/hide
Query:  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSDLESSTSP----PIVDQLKQVSIVDLEK
        K SNK+L +LSKLE LD   Y RWS+K+L FF+Q+EVDYVL TD P SDP  T ST SSDLESST P     + DQ+K+  ++D EK
Subjt:  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSDLESSTSP----PIVDQLKQVSIVDLEK

KAA0045258.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.2e-1461.18Show/hide
Query:  SNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSDLESSTSPP----IVDQLKQVSIVDLEK
        SNK+L +LSKLE LD   Y RWS+K+L FF+Q+EVDYVL TD P SDP  T ST SSDLESST PP    + DQ+K+  ++DLEK
Subjt:  SNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSDLESSTSPP----IVDQLKQVSIVDLEK

TYK23593.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.5e-1358.62Show/hide
Query:  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSDLESSTSP----PIVDQLKQVSIVDLEK
        K SNK+L +LSKLE LD   Y RWS+K+L FF+Q+EVDYVL TD P SDP  T ST SSDLESST P     + DQ+K+  ++D EK
Subjt:  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSDLESSTSP----PIVDQLKQVSIVDLEK

TrEMBL top hitse value%identityAlignment
A0A5A7TNP0 Ty1-copia retrotransposon protein1.7e-1358.62Show/hide
Query:  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSDLESSTSP----PIVDQLKQVSIVDLEK
        K SNK+L +LSKLE LD   Y RWS+K+L FF+Q+EVDYVL TD P SDP  T ST SSDLESST P     + DQ+K+  ++D EK
Subjt:  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSDLESSTSP----PIVDQLKQVSIVDLEK

A0A5A7TNY1 Ty1-copia retrotransposon protein2.2e-1358.62Show/hide
Query:  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSDLESSTSP----PIVDQLKQVSIVDLEK
        K SNK+  +LSKLE LD   YHRWS+ +L FF+Q+EVDYVL TD P SDP+ T ST SSD ESST P     I DQ+K   ++DLEK
Subjt:  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSDLESSTSP----PIVDQLKQVSIVDLEK

A0A5A7TQW7 Ty1-copia retrotransposon protein1.5e-1461.18Show/hide
Query:  SNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSDLESSTSPP----IVDQLKQVSIVDLEK
        SNK+L +LSKLE LD   Y RWS+K+L FF+Q+EVDYVL TD P SDP  T ST SSDLESST PP    + DQ+K+  ++DLEK
Subjt:  SNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSDLESSTSPP----IVDQLKQVSIVDLEK

A0A5D3DGZ1 Ty1-copia retrotransposon protein1.5e-1457.32Show/hide
Query:  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITDPPSDPAGTISTPSSDLESSTSPPIVDQLKQVSIVDLEK
        K SNKV+ +LSKLEL D   YHRWS+K+L FF+++EV+YVL  DP SDP+ TI TP +   +  S  +VDQ+ +VSIVDLEK
Subjt:  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITDPPSDPAGTISTPSSDLESSTSPPIVDQLKQVSIVDLEK

A0A5D3DJ22 Ty1-copia retrotransposon protein1.7e-1358.62Show/hide
Query:  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSDLESSTSP----PIVDQLKQVSIVDLEK
        K SNK+L +LSKLE LD   Y RWS+K+L FF+Q+EVDYVL TD P SDP  T ST SSDLESST P     + DQ+K+  ++D EK
Subjt:  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSDLESSTSP----PIVDQLKQVSIVDLEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTTGCCGCCCGGTAGGTCAGATAGGGCAGTGGTTTGTCACAACACAACAATCTATTTAGTTCAACATTCTAATCTTAAGTTCCAACAATCTGAAAACAATTATAA
TAATGTCGATAAAAATTCCAACAAGGTTCTTCTGAATTTGTCCAAGCTCGAATTGCTTGATAGAATGAAATATCATCGATGGTCCAAGAAAGTTCTAAACTTTTTCCAGC
AGGTGGAAGTTGACTATGTTCTTATCACTGATCCACCATCTGATCCAGCAGGAACCATTTCAACACCTTCTTCTGATCTAGAATCATCCACAAGTCCTCCTATCGTTGAC
CAATTGAAGCAAGTGTCTATAGTCGATCTTGAGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTTGCCGCCCGGTAGGTCAGATAGGGCAGTGGTTTGTCACAACACAACAATCTATTTAGTTCAACATTCTAATCTTAAGTTCCAACAATCTGAAAACAATTATAA
TAATGTCGATAAAAATTCCAACAAGGTTCTTCTGAATTTGTCCAAGCTCGAATTGCTTGATAGAATGAAATATCATCGATGGTCCAAGAAAGTTCTAAACTTTTTCCAGC
AGGTGGAAGTTGACTATGTTCTTATCACTGATCCACCATCTGATCCAGCAGGAACCATTTCAACACCTTCTTCTGATCTAGAATCATCCACAAGTCCTCCTATCGTTGAC
CAATTGAAGCAAGTGTCTATAGTCGATCTTGAGAAATAA
Protein sequenceShow/hide protein sequence
MLLPPGRSDRAVVCHNTTIYLVQHSNLKFQQSENNYNNVDKNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITDPPSDPAGTISTPSSDLESSTSPPIVD
QLKQVSIVDLEK