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CSPI05G17440 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G17440
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGag/pol protein
Genome locationChr5:18675742..18676083
RNA-Seq ExpressionCSPI05G17440
SyntenyCSPI05G17440
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033904.1 uncharacterized protein E6C27_scaffold43059G00950 [Cucumis melo var. makuwa]5.2e-1153.97Show/hide
Query:  DTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT
        D P P+ +TL LS +LFQ SHVPDI+H++   R +R+FD EDVN SLEG  +P ++ S+ INT
Subjt:  DTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT

KAA0041656.1 uncharacterized protein E6C27_scaffold93G001360 [Cucumis melo var. makuwa]1.0e-1148.68Show/hide
Query:  LIIHIVDHLFV--DTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT
        L+IH+  ++    D PRP+ + LSLS RLFQ SHVP++KH+  P+R  R+FD  D+N S EG  +P D+AS+ I+T
Subjt:  LIIHIVDHLFV--DTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT

KAE8651849.1 hypothetical protein Csa_006761 [Cucumis sativus]1.6e-1257.89Show/hide
Query:  LIIHIVD--HLFVDTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT
        L++H+    H   D    N +TLSLS RLFQ SHVP+IKH + P REAR+FD EDVN+S EGI IP  VASQ IN+
Subjt:  LIIHIVD--HLFVDTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT

KGN53793.1 hypothetical protein Csa_015153 [Cucumis sativus]9.1e-2470.59Show/hide
Query:  RMRESLLRVFLLIIHIVDHLFVDTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT
        +  E++ R FLLIIH VDHLFVD  +PN RT  L  RLFQ+SHVPDIKHNV PFREARIFD E+VNIS EGICIPS VA + INT
Subjt:  RMRESLLRVFLLIIHIVDHLFVDTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT

XP_008466685.1 PREDICTED: uncharacterized protein LOC103504037 [Cucumis melo]1.0e-1148.68Show/hide
Query:  LIIHIVDHLFV--DTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT
        L+IH+  ++    D PRP+ + LSLS RLFQ SHVP++KH+  P+R  R+FD  D+N S EG  +P D+AS+ I+T
Subjt:  LIIHIVDHLFV--DTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT

TrEMBL top hitse value%identityAlignment
A0A0A0KW57 Uncharacterized protein4.4e-2470.59Show/hide
Query:  RMRESLLRVFLLIIHIVDHLFVDTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT
        +  E++ R FLLIIH VDHLFVD  +PN RT  L  RLFQ+SHVPDIKHNV PFREARIFD E+VNIS EGICIPS VA + INT
Subjt:  RMRESLLRVFLLIIHIVDHLFVDTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT

A0A1S3CS01 uncharacterized protein LOC1035040375.0e-1248.68Show/hide
Query:  LIIHIVDHLFV--DTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT
        L+IH+  ++    D PRP+ + LSLS RLFQ SHVP++KH+  P+R  R+FD  D+N S EG  +P D+AS+ I+T
Subjt:  LIIHIVDHLFV--DTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT

A0A5A7SRT0 Uncharacterized protein2.5e-1153.97Show/hide
Query:  DTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT
        D P P+ +TL LS +LFQ SHVPDI+H++   R +R+FD EDVN SLEG  +P ++ S+ INT
Subjt:  DTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT

A0A5A7THX8 Uncharacterized protein5.0e-1248.68Show/hide
Query:  LIIHIVDHLFV--DTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT
        L+IH+  ++    D PRP+ + LSLS RLFQ SHVP++KH+  P+R  R+FD  D+N S EG  +P D+AS+ I+T
Subjt:  LIIHIVDHLFV--DTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT

A0A5A7V746 Uncharacterized protein1.2e-1050Show/hide
Query:  LIIHI-VDHLFV-DTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT
        L++H+ VD L + DTP PN +TLSLS +LFQ SHVPDI+H++ P +  R+FD++DV+ + EG  +   +AS+ INT
Subjt:  LIIHI-VDHLFV-DTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQSINT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAATACTTGTCGTGCAAAGTATCAAGATCCTTCAGTTGTTCTAGAATATTATAATATCATAATTAACTTGCATGCAGTCCGAATGAGAGAAAGTCTTTTAAGAGT
GTTCCTACTCATCATTCATATAGTTGACCATCTGTTCGTAGATACTCCTAGACCAAATTCGAGGACTCTGTCGCTAAGTTGTAGGCTATTCCAGAACTCTCATGTTCCTG
ATATTAAGCATAATGTATGGCCTTTCAGGGAAGCTCGAATATTTGATTTAGAGGATGTCAATATATCTTTAGAAGGAATTTGTATTCCTAGTGATGTTGCCTCACAAAGT
ATCAACACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAATACTTGTCGTGCAAAGTATCAAGATCCTTCAGTTGTTCTAGAATATTATAATATCATAATTAACTTGCATGCAGTCCGAATGAGAGAAAGTCTTTTAAGAGT
GTTCCTACTCATCATTCATATAGTTGACCATCTGTTCGTAGATACTCCTAGACCAAATTCGAGGACTCTGTCGCTAAGTTGTAGGCTATTCCAGAACTCTCATGTTCCTG
ATATTAAGCATAATGTATGGCCTTTCAGGGAAGCTCGAATATTTGATTTAGAGGATGTCAATATATCTTTAGAAGGAATTTGTATTCCTAGTGATGTTGCCTCACAAAGT
ATCAACACTTAG
Protein sequenceShow/hide protein sequence
MVNTCRAKYQDPSVVLEYYNIIINLHAVRMRESLLRVFLLIIHIVDHLFVDTPRPNSRTLSLSCRLFQNSHVPDIKHNVWPFREARIFDLEDVNISLEGICIPSDVASQS
INT