CuGenDBv2

Gene ID	CSPI05G17850
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	ribosomal RNA large subunit methyltransferase E isoform X1
Genome location	Chr5:19002995..19005172
RNA-Seq Expression	CSPI05G17850
Synteny	CSPI05G17850
Gene Ontology terms	GO:0006334 - nucleosome assembly (biological process) GO:0031167 - rRNA methylation (biological process) GO:0000786 - nucleosome (cellular component) GO:0003677 - DNA binding (molecular function) GO:0008650 - rRNA (uridine-2'-O-)-methyltransferase activity (molecular function)
InterPro domains	IPR002877 - Ribosomal RNA methyltransferase FtsJ domain IPR005819 - Linker histone H1/H5 IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004142767.1 uncharacterized protein LOC101216412 isoform X2 [Cucumis sativus]

1.8e-104

97.56

Show/hide

Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP

Query:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQ--G
        KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQ   
Subjt:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQ--G

Query:  RILFP
        R+L P
Subjt:  RILFP

XP_008458861.1 PREDICTED: ribosomal RNA large subunit methyltransferase E isoform X1 [Cucumis melo]

1.8e-112

94.98

Show/hide

Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPH+HCDSRVQTV ADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP

Query:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQGRI
        KSKLKSLSPKEKGFSVILSDMCP+VSGITTRDAALSVELGMQAVNLALGEAALGVG+VIHGKDKDS+DDSTSASDCDGVLR+GGHLVLKLLESEDTQGRI
Subjt:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQGRI

Query:  LFPQLVYTWFCLALRSSSI
        LFPQL YTWFCL  +SS I
Subjt:  LFPQLVYTWFCLALRSSSI

XP_008458862.1 PREDICTED: ribosomal RNA large subunit methyltransferase E isoform X3 [Cucumis melo]

3.7e-102

94.63

Show/hide

Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPH+HCDSRVQTV ADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP

Query:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQ--G
        KSKLKSLSPKEKGFSVILSDMCP+VSGITTRDAALSVELGMQAVNLALGEAALGVG+VIHGKDKDS+DDSTSASDCDGVLR+GGHLVLKLLESEDTQ   
Subjt:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQ--G

Query:  RILFP
        R+L P
Subjt:  RILFP

XP_016902309.1 PREDICTED: ribosomal RNA large subunit methyltransferase E isoform X2 [Cucumis melo]

2.4e-109

93.61

Show/hide

Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFK   IQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPH+HCDSRVQTV ADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP

Query:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQGRI
        KSKLKSLSPKEKGFSVILSDMCP+VSGITTRDAALSVELGMQAVNLALGEAALGVG+VIHGKDKDS+DDSTSASDCDGVLR+GGHLVLKLLESEDTQGRI
Subjt:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQGRI

Query:  LFPQLVYTWFCLALRSSSI
        LFPQL YTWFCL  +SS I
Subjt:  LFPQLVYTWFCLALRSSSI

XP_031741806.1 uncharacterized protein LOC101216412 isoform X1 [Cucumis sativus]

3.6e-129

99.58

Show/hide

Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP

Query:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQGRI
        KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQGRI
Subjt:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQGRI

Query:  LFPQLVYTWFCLALRSSSILYLRIQPDVETTLQKGILVEA
        LFPQLVYTWFCLAL SSSILYLRIQPDVETTLQKGILVEA
Subjt:  LFPQLVYTWFCLALRSSSILYLRIQPDVETTLQKGILVEA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQZ0 FtsJ domain-containing protein

8.7e-105

97.56

Show/hide

Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP

Query:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQ--G
        KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQ   
Subjt:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQ--G

Query:  RILFP
        R+L P
Subjt:  RILFP

A0A1S3C8U8 ribosomal RNA large subunit methyltransferase E isoform X1

8.6e-113

94.98

Show/hide

Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPH+HCDSRVQTV ADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP

Query:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQGRI
        KSKLKSLSPKEKGFSVILSDMCP+VSGITTRDAALSVELGMQAVNLALGEAALGVG+VIHGKDKDS+DDSTSASDCDGVLR+GGHLVLKLLESEDTQGRI
Subjt:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQGRI

Query:  LFPQLVYTWFCLALRSSSI
        LFPQL YTWFCL  +SS I
Subjt:  LFPQLVYTWFCLALRSSSI

A0A1S3C9F1 ribosomal RNA large subunit methyltransferase E isoform X3

1.8e-102

94.63

Show/hide

Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPH+HCDSRVQTV ADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP

Query:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQ--G
        KSKLKSLSPKEKGFSVILSDMCP+VSGITTRDAALSVELGMQAVNLALGEAALGVG+VIHGKDKDS+DDSTSASDCDGVLR+GGHLVLKLLESEDTQ   
Subjt:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQ--G

Query:  RILFP
        R+L P
Subjt:  RILFP

A0A1S4E250 ribosomal RNA large subunit methyltransferase E isoform X2

1.2e-109

93.61

Show/hide

Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFK   IQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPH+HCDSRVQTV ADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP

Query:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQGRI
        KSKLKSLSPKEKGFSVILSDMCP+VSGITTRDAALSVELGMQAVNLALGEAALGVG+VIHGKDKDS+DDSTSASDCDGVLR+GGHLVLKLLESEDTQGRI
Subjt:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQGRI

Query:  LFPQLVYTWFCLALRSSSI
        LFPQL YTWFCL  +SS I
Subjt:  LFPQLVYTWFCLALRSSSI

A0A5D3DGG0 Ribosomal RNA large subunit methyltransferase E isoform X3

2.0e-93

89.39

Show/hide

Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPH+HCDSRVQTV ADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP

Query:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQG
        KSKLKSLSPKEKGFSVILSDMCP+VSGITTRDAALSVELGMQAVNLALGEAALGVG+VIHGKDKDS+DDSTSASDCDGV++      L+ +   + QG
Subjt:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G13830.1 FtsJ-like methyltransferase family protein

8.1e-71

70.05

Show/hide

Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP
        MSGAG PDFFYREAQRLGYVARSAFKLLQIQ Q+KLI  GSSVLDLGCAPGAWLQVACQSLGP R+GG V+G+DIKKVKVP   CDSRVQT++ADV+N P
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLP

Query:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQ
        + K++ LSP++ GFSVILSDMC  VSGITTRDAALS ELGM+A++LA+G+AA+            + DD        GVLR GGHLV+KLLESED Q
Subjt:  KSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAACAAAATAGAAGGGTTTTAGATATAATCAATTCTCCGGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGCATTGGGGGAAGAACGAAATGAGTGGAGCAGGAGCACCCGATTTCTTCTACAGAGAGGCTCAACGCCTTGGCTATGTTGCAAGATCAGCCTTCAAGTTGCTT
CAGATTCAGAACCAATTCAAATTGATTACTTCAGGCTCCTCCGTCTTGGACCTTGGCTGCGCTCCCGGTGCCTGGCTTCAGGTAGCTTGCCAGAGTCTGGGGCCTCCCAG
AAATGGAGGCTCTGTTTTGGGTATTGATATCAAGAAGGTAAAGGTTCCTCATATGCATTGTGATTCAAGGGTACAAACTGTTAGTGCTGATGTTATGAACCTTCCTAAAA
GCAAATTGAAGTCACTATCCCCTAAGGAGAAGGGATTTTCTGTAATACTCTCAGACATGTGCCCCTTAGTATCTGGAATCACCACTAGAGATGCGGCATTATCAGTTGAA
TTGGGTATGCAAGCAGTTAATTTGGCACTCGGAGAAGCTGCCTTAGGTGTTGGAGATGTTATACATGGAAAGGACAAGGATAGTGTCGATGATTCAACTTCAGCTTCAGA
TTGTGATGGTGTTTTACGACAAGGAGGCCACCTTGTTTTAAAACTATTGGAGAGTGAAGACACACAAGGTAGAATTTTATTTCCACAGCTTGTTTATACTTGGTTTTGCC
TGGCTTTACGTTCTTCCTCTATTCTTTATCTCAGAATTCAGCCGGATGTTGAAACCACTCTTCAGAAAGGCATCCTGGTTGAGGCCTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKQNRRVLDIINSPGKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKHWGKNEMSGAGAPDFFYREAQRLGYVARSAFKLL
QIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLPKSKLKSLSPKEKGFSVILSDMCPLVSGITTRDAALSVE
LGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVLRQGGHLVLKLLESEDTQGRILFPQLVYTWFCLALRSSSILYLRIQPDVETTLQKGILVEA

CSPI05G17850 (gene) of Cucumber (PI 183967) v1 genome