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CSPI05G18530 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G18530
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionsurvival of motor neuron-related-splicing factor 30
Genome locationChr5:19551318..19553124
RNA-Seq ExpressionCSPI05G18530
SyntenyCSPI05G18530
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054176.1 survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis melo var. makuwa]5.6e-4284.48Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMDCF-----CVR
        MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQ KENEM+CF     C  
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMDCF-----CVR

Query:  AHIRYCKHICVCALKD
        A+      + VCALKD
Subjt:  AHIRYCKHICVCALKD

XP_004142808.1 survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis sativus]2.6e-3998.89Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMD
        MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEM+
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMD

XP_022155149.1 survival of motor neuron-related-splicing factor 30 [Momordica charantia]3.6e-3381.44Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMDCFCVRAH
        MQGGEDVSIEELA+NLSTYKDQL QVRQLLDDDP NSEYIDMEKELEEVI+LTEELL+TAKQNE+SGSNVETGD+SASI F QSKE +M+   +  H
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMDCFCVRAH

XP_022933076.1 survival of motor neuron-related-splicing factor 30 [Cucurbita moschata]1.5e-3488.89Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMD
        MQGGEDVS+EELA NLSTYKDQL QVR+LLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNE+SGSNVETGDDSASI FQQ+K N+M+
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMD

XP_038876515.1 survival of motor neuron-related-splicing factor 30 [Benincasa hispida]7.8e-3692.22Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMD
        MQGGEDVSIEELANNLSTYKDQL QVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNE+ GSNVETGDDSASI F Q KENEM+
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMD

TrEMBL top hitse value%identityAlignment
A0A0A0KUI2 Uncharacterized protein1.3e-3985.45Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMDCFCVRAHIRY
        MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEM    V +H+  
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMDCFCVRAHIRY

Query:  CKHICVCALK
          H C+  L+
Subjt:  CKHICVCALK

A0A5A7UIS4 Survival of motor neuron-related-splicing factor 30 isoform X12.7e-4284.48Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMDCF-----CVR
        MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQ KENEM+CF     C  
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMDCF-----CVR

Query:  AHIRYCKHICVCALKD
        A+      + VCALKD
Subjt:  AHIRYCKHICVCALKD

A0A6J1DPE2 survival of motor neuron-related-splicing factor 301.8e-3381.44Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMDCFCVRAH
        MQGGEDVSIEELA+NLSTYKDQL QVRQLLDDDP NSEYIDMEKELEEVI+LTEELL+TAKQNE+SGSNVETGD+SASI F QSKE +M+   +  H
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMDCFCVRAH

A0A6J1EY48 survival of motor neuron-related-splicing factor 307.1e-3588.89Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMD
        MQGGEDVS+EELA NLSTYKDQL QVR+LLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNE+SGSNVETGDDSASI FQQ+K N+M+
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMD

A0A6J1K7R2 survival of motor neuron-related-splicing factor 307.1e-3588.89Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMD
        MQGGEDVS+EELA NLSTYKDQL QVR+LLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNE+SGSNVETGDDSASI FQQ+K N+M+
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMD

SwissProt top hitse value%identityAlignment
O75940 Survival of motor neuron-related-splicing factor 303.7e-0440Show/hide
Query:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSN
        E+LA  L++YK QL QV   L  +  N + + ++K+L+EVI LT++LLST     ++ S+
Subjt:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSN

Q3T045 Survival of motor neuron-related-splicing factor 303.7e-0440Show/hide
Query:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSN
        E+LA  L++YK QL QV   L  +  N + + ++K+L+EVI LT++LLST     ++ S+
Subjt:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSN

Q5R591 Survival of motor neuron-related-splicing factor 303.7e-0440Show/hide
Query:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSN
        E+LA  L++YK QL QV   L  +  N + + ++K+L+EVI LT++LLST     ++ S+
Subjt:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSN

Q7ZV80 Survival of motor neuron-related-splicing factor 307.4e-0548Show/hide
Query:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLST
        EEL   LS YK QL QV   L  DP N + + ++K+L+EVI LT++LL++
Subjt:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLST

Q8BGT7 Survival of motor neuron-related-splicing factor 303.7e-0440Show/hide
Query:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSN
        E+LA  L++YK QL QV   L  +  N + + ++K+L+EVI LT++LLST     ++ S+
Subjt:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSN

Arabidopsis top hitse value%identityAlignment
AT2G02570.1 nucleic acid binding;RNA binding6.4e-2071.64Show/hide
Query:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSN
        G E++SIE+LA+++STYK+QL QVRQLL +DP NSEY DMEKEL+EVIALTEE+L+TAKQNE+S S+
Subjt:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSN

AT2G02570.2 nucleic acid binding;RNA binding6.4e-2071.64Show/hide
Query:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSN
        G E++SIE+LA+++STYK+QL QVRQLL +DP NSEY DMEKEL+EVIALTEE+L+TAKQNE+S S+
Subjt:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSN

AT2G02570.3 nucleic acid binding;RNA binding6.4e-2071.64Show/hide
Query:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSN
        G E++SIE+LA+++STYK+QL QVRQLL +DP NSEY DMEKEL+EVIALTEE+L+TAKQNE+S S+
Subjt:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSN

AT2G02570.4 nucleic acid binding;RNA binding6.4e-2071.64Show/hide
Query:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSN
        G E++SIE+LA+++STYK+QL QVRQLL +DP NSEY DMEKEL+EVIALTEE+L+TAKQNE+S S+
Subjt:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGGAGGAGAAGATGTTAGCATTGAAGAGTTGGCTAATAATCTGTCTACCTACAAAGACCAGCTTCACCAGGTCAGACAGCTGTTAGATGATGATCCCGGCAACTC
TGAATACATTGATATGGAAAAGGAGCTTGAAGAGGTTATTGCTTTGACGGAAGAACTTCTTTCAACAGCAAAGCAAAATGAGGTTTCTGGATCAAATGTAGAAACGGGTG
ATGACAGTGCATCAATTGGTTTCCAGCAGTCTAAAGAAAATGAAATGGACTGTTTTTGTGTACGTGCTCATATTCGTTACTGCAAACACATTTGTGTCTGTGCTTTGAAG
GATTAA
mRNA sequenceShow/hide mRNA sequence
CACTGATCATCAAAAGGGCTGTCTTAATCTGGACGGGGAGAGTTAGCGTTCGTGTGTGTGTTCTTCATCCTCTGATTCTCTTTCTCAAAATTTTTCCAATCTTACGCTCT
TTTTCTCCCTCCTCTTCCTCTGCTCATCCAATTCTACCAAAATAATGCAAGGAGGAGAAGATGTTAGCATTGAAGAGTTGGCTAATAATCTGTCTACCTACAAAGACCAG
CTTCACCAGGTCAGACAGCTGTTAGATGATGATCCCGGCAACTCTGAATACATTGATATGGAAAAGGAGCTTGAAGAGGTTATTGCTTTGACGGAAGAACTTCTTTCAAC
AGCAAAGCAAAATGAGGTTTCTGGATCAAATGTAGAAACGGGTGATGACAGTGCATCAATTGGTTTCCAGCAGTCTAAAGAAAATGAAATGGACTGTTTTTGTGTACGTG
CTCATATTCGTTACTGCAAACACATTTGTGTCTGTGCTTTGAAGGATTAA
Protein sequenceShow/hide protein sequence
MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMDCFCVRAHIRYCKHICVCALK
D