; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G18620 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G18620
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPMD domain-containing protein
Genome locationChr5:19663639..19664538
RNA-Seq ExpressionCSPI05G18620
SyntenyCSPI05G18620
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033822.1 uncharacterized protein E6C27_scaffold1735G00180 [Cucumis melo var. makuwa]1.8e-7058.8Show/hide
Query:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG
        MICV E+ LSQVYL+ PTL+   +ITS YK WWLAKHGDYLQEG+ +LIDR TP  IKSK+TKKIE+N     + IC  K EEL         V+K+ EG
Subjt:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG

Query:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPMSSLGDHDLHIEGT
         K LV     S +FK   R G DN+ KD   L T K P   TED  NNNDDRHWKR KR +KQSIDDE+PPIEVLDVAQFF+I  PMSSLGDH L IEGT
Subjt:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPMSSLGDHDLHIEGT

Query:  LKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDLR
         K M + +     L+ SEN+KTPIG        LV K SPQQV GT+PI  SEIS FC  +LISDLR
Subjt:  LKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDLR

TYK21863.1 uncharacterized protein E5676_scaffold836G00160 [Cucumis melo var. makuwa]3.0e-6552.16Show/hide
Query:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG
        MICV E+ LSQVYL+ PTL+   +ITS YK WWLAKHGDYLQEG+ +LIDR TP  IKSK+TKKIE+N     + IC  K EEL         V+K+ EG
Subjt:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG

Query:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPM-------------
         K LV     S +FK   R G DN+ KD   L T K P   TED  NNNDDRHWKR KR +KQSIDDE+PPIEVLDVAQFF+I  PM             
Subjt:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPM-------------

Query:  ---------------------SSLGDHDLHIEGTLKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDL
                             SSLGDH L IEGT K M + +     L+ SEN+KTPIG        LV K SPQQV GT+PI  SEIS FC  +LISDL
Subjt:  ---------------------SSLGDHDLHIEGTLKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDL

Query:  R
        R
Subjt:  R

TYK22840.1 uncharacterized protein E5676_scaffold115G00220 [Cucumis melo var. makuwa]1.5e-5350.75Show/hide
Query:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG
        MI V +N LSQVYL    L+   +ITS YKV WLAKH DYLQEGV +LID   P+H+ S                                         
Subjt:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG

Query:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPMSSLGDHDLHIEGT
        KKC V      T+FK   R GTDN+GKD  +L T K     TED+Q+NNDDRH KR KR +KQSIDDE+ PIEV DVAQFF+I   MSSLGDH L IEGT
Subjt:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPMSSLGDHDLHIEGT

Query:  LKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDLRR
         K MV+ +    VL+ SEN+K PIG      R LVIK SPQ+VEG KPI ASEIS FC  +LISDL+R
Subjt:  LKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDLRR

XP_031739998.1 uncharacterized protein LOC116403342 [Cucumis sativus]1.5e-8060.79Show/hide
Query:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG
        MIC+ ENTLSQVYL     N D ++TS YKVWWLAKHGDYLQEGV HLIDR TP HIKSK+TKKIE+NFGSG+Q ICS         + +E  V+KIE G
Subjt:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG

Query:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPMSSLGDHDLHIEGT
         K LVD L LSTRFK  I+GG DN+GKDNRL I  KHP +R ED+Q++NDDRHWKR K+PNKQSIDDEE PI               SSLGDHDLHIE T
Subjt:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPMSSLGDHDLHIEGT

Query:  LKSM----------VNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDLRR
        L+SM           NL+  N+VL+Y+ N+K PIG  I  A   VIK  PQ+VEGT+PI  SEIS FC  SLISDLRR
Subjt:  LKSM----------VNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDLRR

XP_031745312.1 uncharacterized protein LOC116405439 [Cucumis sativus]4.7e-8760.07Show/hide
Query:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG
        MIC+ ENTLSQVYL     N D ++TS YKVWWLAKHGDYLQEGV HLIDR TP HIKSK+TKKIE+NFGSG+Q ICS         + +E  V+KIE G
Subjt:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG

Query:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPM-------------
         K LVD L LSTRFK  I+GG DN+GKDNRL I  KHP +R ED+Q++NDDRHWKR K+PNKQSIDDEE PI V D AQFF++P PM             
Subjt:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPM-------------

Query:  -----------------SSLGDHDLHIEGTLKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDLRR
                         SSLGDHDLHIE TL+SM NL+  NVVL+Y+ N+K PIG  I  A   VIK  PQ+VEGT+PI  SEIS FC  SLISDLRR
Subjt:  -----------------SSLGDHDLHIEGTLKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDLRR

TrEMBL top hitse value%identityAlignment
A0A5A7SJR1 Uncharacterized protein1.1e-5250.37Show/hide
Query:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG
        MI V +N LSQVYL    L+   +ITS YKV WLAKH DYLQEGV +LID   P+H+ S                                         
Subjt:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG

Query:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPMSSLGDHDLHIEGT
        KKC V      T+FK   R GTDN+GKD  +L T K     TED+Q+NNDDRH KR KR +KQSIDDE+ PIEV DVAQFF+I   MS LGDH L IEGT
Subjt:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPMSSLGDHDLHIEGT

Query:  LKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDLRR
         K MV+ +    VL+ SEN K PIG      R LVIK SPQ+VEG KPI ASEIS FC  +LISDL+R
Subjt:  LKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDLRR

A0A5A7SRI5 Uncharacterized protein8.7e-7158.8Show/hide
Query:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG
        MICV E+ LSQVYL+ PTL+   +ITS YK WWLAKHGDYLQEG+ +LIDR TP  IKSK+TKKIE+N     + IC  K EEL         V+K+ EG
Subjt:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG

Query:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPMSSLGDHDLHIEGT
         K LV     S +FK   R G DN+ KD   L T K P   TED  NNNDDRHWKR KR +KQSIDDE+PPIEVLDVAQFF+I  PMSSLGDH L IEGT
Subjt:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPMSSLGDHDLHIEGT

Query:  LKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDLR
         K M + +     L+ SEN+KTPIG        LV K SPQQV GT+PI  SEIS FC  +LISDLR
Subjt:  LKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDLR

A0A5A7U4C3 Uncharacterized protein2.4e-5248.88Show/hide
Query:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG
        MICV E+TLSQVYL  PTL+   +ITS YK WWLAKHGDYLQEG+ +LIDR TP  IKSK+TKKIE+N     + IC  K +E                 
Subjt:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG

Query:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPMSSLGDHDLHIEGT
                 +  +FK   R G DNM KD   L T K P   TED+ ++NDDRHWKR KRP+KQSIDDE+PPIEV DV        PM+S  D        
Subjt:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPMSSLGDHDLHIEGT

Query:  LKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDLRR
                     L+ SEN+KTPIG  I     LV K SPQ+V GT+PI  SEIS FC  +LISDLR+
Subjt:  LKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDLRR

A0A5D3DEA3 Uncharacterized protein1.4e-6552.16Show/hide
Query:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG
        MICV E+ LSQVYL+ PTL+   +ITS YK WWLAKHGDYLQEG+ +LIDR TP  IKSK+TKKIE+N     + IC  K EEL         V+K+ EG
Subjt:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG

Query:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPM-------------
         K LV     S +FK   R G DN+ KD   L T K P   TED  NNNDDRHWKR KR +KQSIDDE+PPIEVLDVAQFF+I  PM             
Subjt:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPM-------------

Query:  ---------------------SSLGDHDLHIEGTLKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDL
                             SSLGDH L IEGT K M + +     L+ SEN+KTPIG        LV K SPQQV GT+PI  SEIS FC  +LISDL
Subjt:  ---------------------SSLGDHDLHIEGTLKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDL

Query:  R
        R
Subjt:  R

A0A5D3DHK0 Uncharacterized protein7.4e-5450.75Show/hide
Query:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG
        MI V +N LSQVYL    L+   +ITS YKV WLAKH DYLQEGV +LID   P+H+ S                                         
Subjt:  MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEG

Query:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPMSSLGDHDLHIEGT
        KKC V      T+FK   R GTDN+GKD  +L T K     TED+Q+NNDDRH KR KR +KQSIDDE+ PIEV DVAQFF+I   MSSLGDH L IEGT
Subjt:  KKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPMSSLGDHDLHIEGT

Query:  LKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDLRR
         K MV+ +    VL+ SEN+K PIG      R LVIK SPQ+VEG KPI ASEIS FC  +LISDL+R
Subjt:  LKSMVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDLRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTGCGTTCACGAGAACACACTTTCCCAAGTATATCTTTCTACGCCTACCCTTAACCTAGATGCCTATATTACTTCTGATTATAAGGTCTGGTGGCTTGCAAAACA
CGGTGATTACCTCCAAGAAGGAGTGCACCATTTGATAGATCGTCTTACTCCCCTTCACATTAAATCCAAAAGCACAAAAAAAATTGAGAATAATTTTGGTAGTGGAAGTC
AAACGATATGCTCTAAGAAAATTGAGGAACTGTTCGTGAAGAAAATTGAGGAACTGTTCGTGAAGAAAATTGAGGAAGGTAAAAAATGCTTGGTGGATAAATTGATCCTT
TCTACACGATTTAAACTTTGTATTAGAGGTGGTACTGACAATATGGGTAAGGACAACCGCTTATTGATAACTGTGAAGCACCCTTTTGAACGTACCGAGGACAATCAAAA
CAACAATGATGATCGTCATTGGAAGAGACTTAAGAGGCCCAACAAACAATCAATTGATGATGAAGAGCCTCCTATTGAAGTCCTCGATGTCGCACAATTTTTTAACATCC
CCTTCCCCATGTCCTCTTTAGGTGACCATGACCTACACATCGAAGGAACCTTAAAGTCGATGGTGAATCTAGACAGCTATAATGTTGTACTTACTTATAGTGAGAACAAT
AAGACACCTATAGGTGTAGCTATTAGGTTAGCTCGTTCTCTTGTGATTAAGCAGTCCCCTCAACAAGTGGAAGGAACGAAGCCTATTGCAGCTTCTGAGATTTCTCAATT
TTGTGTCGGTAGCTTAATTTCTGACCTTCGACGATAG
mRNA sequenceShow/hide mRNA sequence
ATGATTTGCGTTCACGAGAACACACTTTCCCAAGTATATCTTTCTACGCCTACCCTTAACCTAGATGCCTATATTACTTCTGATTATAAGGTCTGGTGGCTTGCAAAACA
CGGTGATTACCTCCAAGAAGGAGTGCACCATTTGATAGATCGTCTTACTCCCCTTCACATTAAATCCAAAAGCACAAAAAAAATTGAGAATAATTTTGGTAGTGGAAGTC
AAACGATATGCTCTAAGAAAATTGAGGAACTGTTCGTGAAGAAAATTGAGGAACTGTTCGTGAAGAAAATTGAGGAAGGTAAAAAATGCTTGGTGGATAAATTGATCCTT
TCTACACGATTTAAACTTTGTATTAGAGGTGGTACTGACAATATGGGTAAGGACAACCGCTTATTGATAACTGTGAAGCACCCTTTTGAACGTACCGAGGACAATCAAAA
CAACAATGATGATCGTCATTGGAAGAGACTTAAGAGGCCCAACAAACAATCAATTGATGATGAAGAGCCTCCTATTGAAGTCCTCGATGTCGCACAATTTTTTAACATCC
CCTTCCCCATGTCCTCTTTAGGTGACCATGACCTACACATCGAAGGAACCTTAAAGTCGATGGTGAATCTAGACAGCTATAATGTTGTACTTACTTATAGTGAGAACAAT
AAGACACCTATAGGTGTAGCTATTAGGTTAGCTCGTTCTCTTGTGATTAAGCAGTCCCCTCAACAAGTGGAAGGAACGAAGCCTATTGCAGCTTCTGAGATTTCTCAATT
TTGTGTCGGTAGCTTAATTTCTGACCTTCGACGATAG
Protein sequenceShow/hide protein sequence
MICVHENTLSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEELFVKKIEELFVKKIEEGKKCLVDKLIL
STRFKLCIRGGTDNMGKDNRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPMSSLGDHDLHIEGTLKSMVNLDSYNVVLTYSENN
KTPIGVAIRLARSLVIKQSPQQVEGTKPIAASEISQFCVGSLISDLRR