CuGenDBv2

Gene ID	CSPI05G18640
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	squamous cell carcinoma antigen recognized by T-cells 3 isoform X3
Genome location	Chr5:19705103..19705663
RNA-Seq Expression	CSPI05G18640
Synteny	CSPI05G18640
Gene Ontology terms	GO:0006396 - RNA processing (biological process) GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

TYK15073.1 squamous cell carcinoma antigen recognized by T-cells 3 isoform X3 [Cucumis melo var. makuwa]

2.8e-33

86.21

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Query:  GHGTDKAGAGKRFESR-SSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHG D+AG GKRFESR SSKE HK NEQPSG+R+HGGNSV+LKGKNTFAVPRNVRALGWT DKPKTLEQDDE PK+NDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESR-SSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

XP_004142811.2 squamous cell carcinoma antigen recognized by T-cells 3 isoform X1 [Cucumis sativus]

1.4e-40

100

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Query:  GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

XP_011655427.1 squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [Cucumis sativus]

1.4e-40

100

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Query:  GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

XP_016902571.1 PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [Cucumis melo]

2.8e-33

86.21

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Query:  GHGTDKAGAGKRFESR-SSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHG D+AG GKRFESR SSKE HK NEQPSG+R+HGGNSV+LKGKNTFAVPRNVRALGWT DKPKTLEQDDE PK+NDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESR-SSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

XP_031740936.1 squamous cell carcinoma antigen recognized by T-cells 3 isoform X3 [Cucumis sativus]

1.4e-40

100

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Query:  GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CCC2 squamous cell carcinoma antigen recognized by T-cells 3 isoform X1

1.4e-33

86.21

Show/hide

Query:  GHGTDKAGAGKRFESR-SSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHG D+AG GKRFESR SSKE HK NEQPSG+R+HGGNSV+LKGKNTFAVPRNVRALGWT DKPKTLEQDDE PK+NDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESR-SSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

A0A1S3CCW0 squamous cell carcinoma antigen recognized by T-cells 3 isoform X3

1.4e-33

86.21

Show/hide

Query:  GHGTDKAGAGKRFESR-SSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHG D+AG GKRFESR SSKE HK NEQPSG+R+HGGNSV+LKGKNTFAVPRNVRALGWT DKPKTLEQDDE PK+NDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESR-SSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

A0A1S4E2W5 squamous cell carcinoma antigen recognized by T-cells 3 isoform X2

1.4e-33

86.21

Show/hide

Query:  GHGTDKAGAGKRFESR-SSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHG D+AG GKRFESR SSKE HK NEQPSG+R+HGGNSV+LKGKNTFAVPRNVRALGWT DKPKTLEQDDE PK+NDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESR-SSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

A0A5A7UG19 Squamous cell carcinoma antigen recognized by T-cells 3 isoform X1

1.4e-33

86.21

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Query:  GHGTDKAGAGKRFESR-SSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHG D+AG GKRFESR SSKE HK NEQPSG+R+HGGNSV+LKGKNTFAVPRNVRALGWT DKPKTLEQDDE PK+NDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESR-SSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

A0A5D3CT38 Squamous cell carcinoma antigen recognized by T-cells 3 isoform X3

1.4e-33

86.21

Show/hide

Query:  GHGTDKAGAGKRFESR-SSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHG D+AG GKRFESR SSKE HK NEQPSG+R+HGGNSV+LKGKNTFAVPRNVRALGWT DKPKTLEQDDE PK+NDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESR-SSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G24270.1 EMBRYO DEFECTIVE 140

2.1e-10

45.78

Show/hide

Query:  GTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFK
        G D +G  K     S K       +  G R+  GN V+++GKNTFAVPRNV+ LG+TT KP      DE PK+NDEFR ++ K
Subjt:  GTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFK

AT4G24270.2 EMBRYO DEFECTIVE 140

1.0e-09

45.68

Show/hide

Query:  DKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFK
        D +G  K     S K       +  G R+  GN V+++GKNTFAVPRNV+ LG+TT KP      DE PK+NDEFR ++ K
Subjt:  DKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFK

Sequences

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CDS sequence

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GGCCATGGTACGGATAAAGCTGGTGCAGGCAAGAGATTTGAGTCGAGAAGTTCAAAGGAGTCTCATAAAGGCAATGAGCAACCATCTGGGGTGAGGAGACATGGAGGGAA
CAGTGTTGATCTCAAGGGAAAGAACACGTTTGCGGTGCCTAGAAATGTTAGAGCACTTGGTTGGACTACAGATAAACCTAAAACCTTGGAACAAGATGATGAGAAGCCAA
AAACCAATGATGAATTCAGGAAACTGTATTTTAAAGGCTGA

mRNA sequence

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GAGGCCATGGTACGGATAAAGCTGGTGCAGGCAAGAGATTTGAGTCGAGAAGTTCAAAGGAGTCTCATAAAGGCAATGAGCAACCATCTGGGGTGAGGAGACATGGAGGG
AACAGTGTTGATCTCAAGGGAAAGAACACGTTTGCGGTGCCTAGAAATGTTAGAGCACTTGGTTGGACTACAGATAAACCTAAAACCTTGGAACAAGATGATGAGAAGCC
AAAAACCAATGATGAATTCAGGAAACTGTATTTTAAAGGCTGAAGCTGTGTTTGTTGTAACTATTATTTATGGACAAAGAGATTCTGATGTAGATTAGAGTTTATCCCTA
GACATACCCATCCCATACCATACCAGAAAGGAAATTTGATTTTTGTAATCTCTTACAAGTGGAGTTTCGTTTAGTCATTTACTATGGTATCCTAATGTTTGGATACCTGA
TTTGGCTATGTTGTATATATAGTTCAATCGAGATTTTAGGCCTTTTTATAAAATCTAGCAGTTAACTATATGATTGTGCTTTTGATTATTCATGCTTGAAGAGAAGTTAT
ACTAGTAGCTT

Protein sequence

Show/hide protein sequence

GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

CSPI05G18640 (gene) of Cucumber (PI 183967) v1 genome