; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G18750 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G18750
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibonuclease H
Genome locationChr5:19846048..19847529
RNA-Seq ExpressionCSPI05G18750
SyntenyCSPI05G18750
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]1.5e-17861.6Show/hide
Query:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD
        MK+KKL+V+GDS+L+IHQL GEWETRD KL+PY ++I EL+Q F+ I+F ++PRE+NQ+  ALAT + MF++  NE+++PI++ +R+ P  CM++E+E D
Subjt:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD

Query:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC
         K W+H IK YI+ +EYP  A EN +RTLRKL + FFLNGE+LY +N+DM LLRCV+  +A  I++E+HEGVCGTHANGHMMARQI+RAGYYW T+ +DC
Subjt:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC

Query:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN
        IKYARKCHKCQIY+DK HA AS  H LTA WPFSMW MDVIGPIEPKASNGH+FILVAIDYFTKWVEA SY+ V+K  VVKFI+K+IICR+ LP+ II++
Subjt:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN

Query:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVPS--
        NA+NLNNKLM +L  Q KI H NST Y PKMN A+E ANKNIKRI+EKMTVTY+DWHEMLPFALHGYRTSV TSTG TPFSL+YG+EVVLPIE E+PS  
Subjt:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVPS--

Query:  -----------------------------------------------------FREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR
                                                             F+E DLVLK++LP QKDHRGKWTPNYEGP+VVK+
Subjt:  -----------------------------------------------------FREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]8.0e-17761.4Show/hide
Query:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD
        MK+KKL+V+GDS+L+IHQL GEWETRD KL+PY + I EL+Q F+ I+F ++PRE+NQ+  ALAT + MF++  NE++ PI++ +R+ P  CM++E+E D
Subjt:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD

Query:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC
           W+H IK YI+ +EYP  A EN +RTLRKL M FFLNGE+LY +N+DM LLRCV+  +A  I++EVHEGVCGTHANGHMMARQI+RAGYYW T+ +DC
Subjt:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC

Query:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN
        IKYARKCHKCQIY+DK HA AS  H LTA WPFSMW MD+IGPIEPKASNGHRFILVAIDYFTKWVEA S + V+K  VVKFI+ +IICR+ LP+ II++
Subjt:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN

Query:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVPS--
        NA+NLNNKLM +LC   KI HFNST Y PKMN A+E ANKNIKRI+EKMTVTY+DWHEMLPFALHGYRTSV TSTG TPFSL+YG++ VLPIE E+PS  
Subjt:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVPS--

Query:  -----------------------------------------------------FREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR
                                                             FREGDLVLK +LP QKDHRGKWT NYEGP+VVK+
Subjt:  -----------------------------------------------------FREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR

XP_031738857.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]1.0e-17661.4Show/hide
Query:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD
        M +KKL+V GDS+L+IHQ+  EWETRD KL+PY++YI +L+Q FE I+F HV RE N++  ALAT + MF++    E+ PI+I KR+ P YCMN+E   D
Subjt:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD

Query:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC
         K WY  IK YI+CREYP GA +N +RT+R+L MNFFL+GEVLY +N+DM LLRCVD  EAK I+ E+HEG+CGTHANGH MARQI+R+GYYW+TM SDC
Subjt:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC

Query:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN
        IKYAR+C KCQIY D+IHA ASP HVL+A WPFS+W +DVIGPI+PKASNGHRFILVAIDYFTKW+EA SY +V++  V+KFI+K++ICR+ LPE IIT+
Subjt:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN

Query:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVP---
        NAKNLNNK+M++LC + KI H NST Y PKMN A+E ANKNIKRIIEKMT TYKDWHE+LPFALHGYRTSV TSTG TPFSL+YG+E VLP+E E+P   
Subjt:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVP---

Query:  ----------------------------------------------------SFREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR
                                                            SFREGDLVLK++LPF KDHRGKWTPNYEGP+VVK+
Subjt:  ----------------------------------------------------SFREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR

XP_031739260.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402917 [Cucumis sativus]6.1e-17761.35Show/hide
Query:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD
        M +KKL+V GDS+L+IHQ+  EWETRD KL+PY++YI +L+Q FE I+F HV RE N++  ALAT + MF++    E+ PI+I KR+ P YCMN+E   D
Subjt:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD

Query:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC
         K WY  IK YI+CREYP GA +N +RT+R+L MNFFL+GEVLY +N+DM LLRCVD  EAK I+ E+HEG+CGTHANGH MARQI R+GYYW+TM SDC
Subjt:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC

Query:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN
        IKYAR+C KCQIY D+IHA ASP HVL+A WPFS+W +DVIGPI+PKASNGHRFILVAIDYFTKW+EA SY +V++  V+KFI+K++ICR+ LPE IIT+
Subjt:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN

Query:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVP---
        NAKNLNNK+M++LC + KI H NST YHPKMN A+E ANKNIKRIIEKMT TYKDWHE+LPFALHGYRTSV TSTG TPFSL+YG+E VLP+E E+P   
Subjt:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVP---

Query:  ------------------------------------------------------SFREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR
                                                              SFREGDLVLK++LPF KDHRGKWTPNYEGP+VVK+
Subjt:  ------------------------------------------------------SFREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR

XP_031741309.1 LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus]1.4e-17661.4Show/hide
Query:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD
        M +KKL+V GDS+L+IHQ+  EWETRD KL+PY++YI +L+Q FE I+F HV RE N++  ALAT + MF++    E+ PI+I KR+ P YCMN+E   D
Subjt:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD

Query:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC
         K WY  IK YI+CREYP GA +N +RT+R+L MNFFL+GEVLY +N+DM LLRCVD  EAK I+ E+HEG+CGTHANGH MARQI+R+GYYW+TM SDC
Subjt:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC

Query:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN
        IKYAR+C KCQIY D+IHA ASP HVL+A WPFS+W +DVIGPI+PKASNGHRFILVAIDYFTKW+EA SY +V++  V+KFI+K++ICR+ LPE IIT+
Subjt:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN

Query:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVP---
        NAKNLNNK+M++LC + KI H NST Y PKMN A+E ANKNIKRIIEKMT TYKDWHE+LPFALHGYRTSV TSTG TPFSL+YG+E VLP+E E+P   
Subjt:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVP---

Query:  ----------------------------------------------------SFREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR
                                                            SFREGDLVLK++LPF KDHRGKWTPNYEGP+VVK+
Subjt:  ----------------------------------------------------SFREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR

TrEMBL top hitse value%identityAlignment
A0A5A7U7X5 Ribonuclease H6.2e-17573.25Show/hide
Query:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD
        MKIKKL+V GDS+L++HQLNGEWETRD KLIPYN YI  +AQTF SITF+HVPRESNQ+  ALAT SAMF+VAY+E +QPIR+EK +TP YCM++E+E +
Subjt:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD

Query:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC
         K+WYH IKHYI  REYP GA ENS+RT+R+L M FFLNGEVLY +NY MTLLRCVDA E + IL+E+HEGV  TH N HMMA Q++RAGY+W  M S+C
Subjt:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC

Query:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN
        IKY R+C+KCQIYADK HA   P HVLTA WPFSMW +DVIGPIEPKASNGHRFILVAIDYFTKWVEA SYKSV+KQAVVKFI+KDIICR+ LPERII N
Subjt:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN

Query:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVPSFR
        N KN+NNKLME+LC+Q K+ H NSTLY PKMN A+E ANKNIK+I+EKM+VTY+DWHEMLPF LHGYR  V TSTG TPFSL+YG +VVLP++ EVPS R
Subjt:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVPSFR

A0A6J1CNY7 Ribonuclease H2.5e-17661.19Show/hide
Query:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD
        MK+KKL+V+GDS+L+IHQL GEWETRD KL+PY + I EL+Q F+ ++F ++PRE+NQ+  ALAT + MF++  NE++ PI++ +R+ P  CM++E+E D
Subjt:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD

Query:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC
           W+H IK YI  +EYP  A EN +RT RKL M FFLNGE+LY +N+DM LLRCV+  +A  I++EVHEGVC THANGHM+ARQI+RAGYYW T+ +DC
Subjt:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC

Query:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN
        IKYARKCHKCQIYADK HA AS  H LTA WPFSMW MDVIGPIEPKASNGHRFILVAIDYFT WVEA SY+ V+K  VVKFI+K+IICR+ LPE II++
Subjt:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN

Query:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVPS--
        NA+NLNNKL  +LC Q KI H NST Y PKMN A+E ANKNIKRI+EKMTVTY+DWH MLPFALHGYRTSV TSTG TPFSL+YG+ VVLPIE E+PS  
Subjt:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVPS--

Query:  -----------------------------------------------------FREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR
                                                             FREGDLVLK++LP QKDHRGKWTPNYEGP++VK+
Subjt:  -----------------------------------------------------FREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR

A0A6J1D099 Ribonuclease H7.0e-17961.6Show/hide
Query:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD
        MK+KKL+V+GDS+L+IHQL GEWETRD KL+PY ++I EL+Q F+ I+F ++PRE+NQ+  ALAT + MF++  NE+++PI++ +R+ P  CM++E+E D
Subjt:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD

Query:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC
         K W+H IK YI+ +EYP  A EN +RTLRKL + FFLNGE+LY +N+DM LLRCV+  +A  I++E+HEGVCGTHANGHMMARQI+RAGYYW T+ +DC
Subjt:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC

Query:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN
        IKYARKCHKCQIY+DK HA AS  H LTA WPFSMW MDVIGPIEPKASNGH+FILVAIDYFTKWVEA SY+ V+K  VVKFI+K+IICR+ LP+ II++
Subjt:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN

Query:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVPS--
        NA+NLNNKLM +L  Q KI H NST Y PKMN A+E ANKNIKRI+EKMTVTY+DWHEMLPFALHGYRTSV TSTG TPFSL+YG+EVVLPIE E+PS  
Subjt:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVPS--

Query:  -----------------------------------------------------FREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR
                                                             F+E DLVLK++LP QKDHRGKWTPNYEGP+VVK+
Subjt:  -----------------------------------------------------FREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR

A0A6J1DZ90 Ribonuclease H8.6e-17761.81Show/hide
Query:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD
        MK+KK +V+GDS L+IHQL GEWETRD KL+PY + I EL+Q F+ I+F ++PRE+NQ+  ALAT + MF++  NE+++PI++ +R+ P  CM++E+E D
Subjt:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD

Query:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC
           W+H IK YI+ +EY   A EN +RTLRKL M FFLNGE+LY +N+DM LLRCV+  +A  I++EVHEGVCGTHANGHMMARQI+RAGYYW T+ +DC
Subjt:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC

Query:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN
        IKYARKCHKCQIY+DK HA  S  H LTA WPFSMW MDVIGPIEPKAS+GHRFILVAIDYFTKWVEA SY+ V+K  VVKFI+K IICR+ LPE II++
Subjt:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN

Query:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVPS--
        NA+NLNNKLM +LC Q KI H NST Y PKMN A+E ANKNIKRI+EKMTVTY DWHEMLPFALHGYRTSV TSTG TPFSL+YG+EVVL IE E+PS  
Subjt:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVPS--

Query:  -----------------------------------------------------FREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR
                                                             FREGDLVLK++LP QKDHRGKWTPNYEGP+VVK+
Subjt:  -----------------------------------------------------FREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR

A0A6J1E2J7 Ribonuclease H3.9e-17761.4Show/hide
Query:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD
        MK+KKL+V+GDS+L+IHQL GEWETRD KL+PY + I EL+Q F+ I+F ++PRE+NQ+  ALAT + MF++  NE++ PI++ +R+ P  CM++E+E D
Subjt:  MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFD

Query:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC
           W+H IK YI+ +EYP  A EN +RTLRKL M FFLNGE+LY +N+DM LLRCV+  +A  I++EVHEGVCGTHANGHMMARQI+RAGYYW T+ +DC
Subjt:  RKQWYHKIKHYIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDC

Query:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN
        IKYARKCHKCQIY+DK HA AS  H LTA WPFSMW MD+IGPIEPKASNGHRFILVAIDYFTKWVEA S + V+K  VVKFI+ +IICR+ LP+ II++
Subjt:  IKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITN

Query:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVPS--
        NA+NLNNKLM +LC   KI HFNST Y PKMN A+E ANKNIKRI+EKMTVTY+DWHEMLPFALHGYRTSV TSTG TPFSL+YG++ VLPIE E+PS  
Subjt:  NAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVPS--

Query:  -----------------------------------------------------FREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR
                                                             FREGDLVLK +LP QKDHRGKWT NYEGP+VVK+
Subjt:  -----------------------------------------------------FREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKR

SwissProt top hitse value%identityAlignment
P03360 Gag-Pol polyprotein (Fragment)6.9e-1431.85Show/hide
Query:  PFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITNNAKNLNNKLMEDLCNQLKIMHFNSTLYHPKM
        P   W +D    I   A  G++++LV +D F+ WVEA   K  + Q V+K +  DII R  LP +I ++N      K+ + LC  L +       Y P+ 
Subjt:  PFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITNNAKNLNNKLMEDLCNQLKIMHFNSTLYHPKM

Query:  NRAIEMANKNIKRIIEKMTV-TYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVE
        +  +E  N+ +K  I K+ + T  DW  +LP AL   R +     G +PF ++YG++
Subjt:  NRAIEMANKNIKRIIEKMTV-TYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVE

P10273 Gag-Pol polyprotein2.9e-1226.52Show/hide
Query:  AKIILQEVHEGVCGTHANGHMMARQIMR--AGYYWSTMGSDCIKYARKCHKC-QIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILV
        AK ++  +H+    TH +   M   + R   G+Y         +    C  C QI A KI     P        P + W +D    I+P    G++++LV
Subjt:  AKIILQEVHEGVCGTHANGHMMARQIMR--AGYYWSTMGSDCIKYARKCHKC-QIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILV

Query:  AIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITNNAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVT--YKD
         ID F+ W EA   K  + + V K + ++I  R+ +P+ + ++N     +++ + +   L I       Y P+ +  +E  N++IK  + K+T+    KD
Subjt:  AIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITNNAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVT--YKD

Query:  WHEMLPFALHGYRTSVHTSTGGTPFSLMYG
        W  +LP  L+  R +     G TPF ++YG
Subjt:  WHEMLPFALHGYRTSVHTSTGGTPFSLMYG

P31792 Pol polyprotein (Fragment)5.4e-1125.97Show/hide
Query:  EAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDCIKYARKCHKCQIYADKIHALAS--PSHVLT-ATWPFSMWRMDVIGPIEPKASNGHRFIL
        EA  ++Q++H     TH +   +   I +  +     G+   +    C  CQ    +++A A+  P    T    P   W +D    ++P  + G++++L
Subjt:  EAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDCIKYARKCHKCQIYADKIHALAS--PSHVLT-ATWPFSMWRMDVIGPIEPKASNGHRFIL

Query:  VAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITNNAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVT--YK
        V +D F+ WVEA   +  +   V K I ++I  R  LP+ I ++N     +++ + L   L I       Y P+ +  +E  N+ IK  + K+T+    K
Subjt:  VAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITNNAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVT--YK

Query:  DWHEMLPFALHGYRTSVHTSTGGTPFSLMYG
        DW  +L  AL   R + +   G TP+ ++YG
Subjt:  DWHEMLPFALHGYRTSVHTSTGGTPFSLMYG

Q09575 Uncharacterized protein K02A2.61.6e-1527.1Show/hide
Query:  VDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDCIKYARKCHKCQIYADKIHAL-ASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRF
        V  S  KI+L+++HEG       G +  +Q  R+  +W  + SD     R C+ CQ  +     +  +P  V  A W      +D  GP+     NG  +
Subjt:  VDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDCIKYARKCHKCQIYADKIHAL-ASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRF

Query:  ILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITNNAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYK
        +LV +D  TK+ E    +S+S    +  ++ +I   H  PE II++N   L + L   +C    I H  S +Y+P+ N A E     +KR I K+     
Subjt:  ILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITNNAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTYK

Query:  DWHEMLPFALHGYRTSVHTS-TGGTPFSLMYGVEVVLPIEAEVPSFREGDLVLKKMLPFQKD
           ++L   L  YR + H++  G TP    +G ++   +   +P+ R   L + K+  +Q++
Subjt:  DWHEMLPFALHGYRTSVHTS-TGGTPFSLMYGVEVVLPIEAEVPSFREGDLVLKKMLPFQKD

Q9TTC1 Gag-Pol polyprotein8.4e-1224.56Show/hide
Query:  EAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDCIKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAI
        + +  +Q +H+    TH     + + + R  ++   + S   +   KC  C +  + +     P        P   W +D    ++P    G+R++LV I
Subjt:  EAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDCIKYARKCHKCQIYADKIHALASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAI

Query:  DYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITNNAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTY--KDWH
        D F+ WVEA   K+ +   V K I ++I+ R  +P+ + ++N      ++ + L  QL I       Y P+ +  +E  N+ IK  + K+ +    KDW 
Subjt:  DYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITNNAKNLNNKLMEDLCNQLKIMHFNSTLYHPKMNRAIEMANKNIKRIIEKMTVTY--KDWH

Query:  EMLPFALHGYRTSVHTSTGGTPFSLMYG
         +LP AL   R +     G TP+ +++G
Subjt:  EMLPFALHGYRTSVHTSTGGTPFSLMYG

Arabidopsis top hitse value%identityAlignment
AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.0e-0537.04Show/hide
Query:  KKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESN
        K + V GDS+L+  Q+ G W+T   K+    K  +EL  +F++   KH+ RE N
Subjt:  KKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESN

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.0e-0537.04Show/hide
Query:  KKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESN
        K + V GDS+L+  Q+ G W+T   K+    K  +EL  +F++   KH+ RE N
Subjt:  KKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATTAAGAAGTTACAAGTTTATGGGGATTCTCTCTTGCTAATACATCAACTCAATGGGGAGTGGGAAACCAGAGACTTTAAATTGATTCCATATAACAAGTACAT
TCGAGAATTGGCTCAAACATTTGAGTCAATTACATTCAAGCATGTCCCACGTGAAAGTAATCAATTAGTATATGCATTGGCTACTTATTCTGCCATGTTTAGTGTGGCCT
ACAACGAGGAAATTCAGCCTATAAGAATTGAAAAGCGTGAAACACCAGTGTATTGCATGAACGTTGAGCAAGAGTTTGACAGAAAACAATGGTACCACAAAATTAAGCAT
TACATTAGATGTCGAGAATATCCTTTAGGAGCATTTGAAAATAGTAGACGTACCCTTAGAAAGTTGGTCATGAATTTTTTTCTTAACGGAGAAGTGTTGTACAACAAAAA
TTATGATATGACTCTTTTAAGATGTGTGGATGCATCAGAGGCTAAAATAATTCTGCAAGAAGTTCATGAGGGAGTTTGCGGAACGCATGCAAATGGACACATGATGGCAA
GACAAATTATGCGTGCTGGTTATTATTGGTCGACTATGGGGTCAGATTGCATAAAATACGCAAGAAAATGTCATAAATGTCAAATATATGCTGATAAAATTCATGCTTTG
GCTTCACCCTCGCATGTATTAACAGCCACATGGCCTTTCTCTATGTGGAGAATGGATGTAATTGGACCAATTGAACCAAAGGCGTCAAATGGTCATCGATTCATTTTGGT
AGCCATAGATTATTTTACTAAATGGGTGGAAGCTACATCGTACAAGAGTGTCTCCAAGCAAGCTGTTGTCAAATTCATACAGAAAGATATTATATGTCGGCACAACCTTC
CTGAACGTATAATCACCAATAATGCCAAGAACTTAAACAATAAGTTAATGGAGGATTTATGTAATCAGCTTAAAATTATGCACTTCAATTCTACCCTGTACCACCCTAAG
ATGAATAGAGCAATAGAGATGGCAAATAAAAATATCAAAAGAATTATTGAAAAGATGACTGTCACGTATAAAGATTGGCATGAGATGTTACCATTTGCATTACACGGTTA
CCGAACGTCAGTTCACACATCAACTGGGGGAACTCCGTTCTCTTTGATGTATGGCGTAGAAGTTGTTTTGCCTATTGAGGCCGAGGTGCCATCCTTCAGGGAAGGGGATT
TGGTCTTAAAAAAGATGCTGCCATTTCAAAAAGATCATAGAGGAAAGTGGACCCCTAATTATGAGGGACCATACGTAGTAAAGCGACATTCTCTGGTGGAGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATTAAGAAGTTACAAGTTTATGGGGATTCTCTCTTGCTAATACATCAACTCAATGGGGAGTGGGAAACCAGAGACTTTAAATTGATTCCATATAACAAGTACAT
TCGAGAATTGGCTCAAACATTTGAGTCAATTACATTCAAGCATGTCCCACGTGAAAGTAATCAATTAGTATATGCATTGGCTACTTATTCTGCCATGTTTAGTGTGGCCT
ACAACGAGGAAATTCAGCCTATAAGAATTGAAAAGCGTGAAACACCAGTGTATTGCATGAACGTTGAGCAAGAGTTTGACAGAAAACAATGGTACCACAAAATTAAGCAT
TACATTAGATGTCGAGAATATCCTTTAGGAGCATTTGAAAATAGTAGACGTACCCTTAGAAAGTTGGTCATGAATTTTTTTCTTAACGGAGAAGTGTTGTACAACAAAAA
TTATGATATGACTCTTTTAAGATGTGTGGATGCATCAGAGGCTAAAATAATTCTGCAAGAAGTTCATGAGGGAGTTTGCGGAACGCATGCAAATGGACACATGATGGCAA
GACAAATTATGCGTGCTGGTTATTATTGGTCGACTATGGGGTCAGATTGCATAAAATACGCAAGAAAATGTCATAAATGTCAAATATATGCTGATAAAATTCATGCTTTG
GCTTCACCCTCGCATGTATTAACAGCCACATGGCCTTTCTCTATGTGGAGAATGGATGTAATTGGACCAATTGAACCAAAGGCGTCAAATGGTCATCGATTCATTTTGGT
AGCCATAGATTATTTTACTAAATGGGTGGAAGCTACATCGTACAAGAGTGTCTCCAAGCAAGCTGTTGTCAAATTCATACAGAAAGATATTATATGTCGGCACAACCTTC
CTGAACGTATAATCACCAATAATGCCAAGAACTTAAACAATAAGTTAATGGAGGATTTATGTAATCAGCTTAAAATTATGCACTTCAATTCTACCCTGTACCACCCTAAG
ATGAATAGAGCAATAGAGATGGCAAATAAAAATATCAAAAGAATTATTGAAAAGATGACTGTCACGTATAAAGATTGGCATGAGATGTTACCATTTGCATTACACGGTTA
CCGAACGTCAGTTCACACATCAACTGGGGGAACTCCGTTCTCTTTGATGTATGGCGTAGAAGTTGTTTTGCCTATTGAGGCCGAGGTGCCATCCTTCAGGGAAGGGGATT
TGGTCTTAAAAAAGATGCTGCCATTTCAAAAAGATCATAGAGGAAAGTGGACCCCTAATTATGAGGGACCATACGTAGTAAAGCGACATTCTCTGGTGGAGCTTTGA
Protein sequenceShow/hide protein sequence
MKIKKLQVYGDSLLLIHQLNGEWETRDFKLIPYNKYIRELAQTFESITFKHVPRESNQLVYALATYSAMFSVAYNEEIQPIRIEKRETPVYCMNVEQEFDRKQWYHKIKH
YIRCREYPLGAFENSRRTLRKLVMNFFLNGEVLYNKNYDMTLLRCVDASEAKIILQEVHEGVCGTHANGHMMARQIMRAGYYWSTMGSDCIKYARKCHKCQIYADKIHAL
ASPSHVLTATWPFSMWRMDVIGPIEPKASNGHRFILVAIDYFTKWVEATSYKSVSKQAVVKFIQKDIICRHNLPERIITNNAKNLNNKLMEDLCNQLKIMHFNSTLYHPK
MNRAIEMANKNIKRIIEKMTVTYKDWHEMLPFALHGYRTSVHTSTGGTPFSLMYGVEVVLPIEAEVPSFREGDLVLKKMLPFQKDHRGKWTPNYEGPYVVKRHSLVEL