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CSPI05G18810 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G18810
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr5:19958918..19959971
RNA-Seq ExpressionCSPI05G18810
SyntenyCSPI05G18810
Gene Ontology termsGO:0030833 - regulation of actin filament polymerization (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0031267 - small GTPase binding (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN68165.1 hypothetical protein VITISV_008538 [Vitis vinifera]3.7e-3933.33Show/hide
Query:  DKWCVAETLAEKFPNLFSLALNKEAYVAE-CWCTATHSWNLGLRRNMLDNEIANAASALEIL-HSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPN
        D W   ++L  +FP L  + ++K   ++     T   SWN   RRN+ D+EI    S ++ L H        D   W+ + +G FT KS FL L++ S  
Subjt:  DKWCVAETLAEKFPNLFSLALNKEAYVAE-CWCTATHSWNLGLRRNMLDNEIANAASALEIL-HSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPN

Query:  IVVPLIRQIWKNKIPKKMKFFLWSLAYRNLNTHEKLQKKIQNTLLSPSMCCLCAKDEETLDHLFLHCPFTRKAWNSVFGIFDLELCLPSKIDSWMIEGLN
          V   + +W +++P K+KFF+W +A++ +NT++ LQ +     LSP +C LC +  ET+DHLFLHC  T   W+ +F +  ++   P  +   +    N
Subjt:  IVVPLIRQIWKNKIPKKMKFFLWSLAYRNLNTHEKLQKKIQNTLLSPSMCCLCAKDEETLDHLFLHCPFTRKAWNSVFGIFDLELCLPSKIDSWMIEGLN

Query:  IRGYNPKGNILWKCATRSLLWSIWKERNSRIFEDRFNSFDSFWTVVQHTASWWTS
          G + +G +LW+ A  ++LW +W+ERN+RIFED+  + ++ W ++   AS W S
Subjt:  IRGYNPKGNILWKCATRSLLWSIWKERNSRIFEDRFNSFDSFWTVVQHTASWWTS

KAA0062399.1 THO complex subunit 1 [Cucumis melo var. makuwa]1.0e-4171.3Show/hide
Query:  DKWCVAETLAEKFPNLFSLALNKEAYVAECWCTATHSWNLGLRRNMLDNEIANAASALEILHSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPNIV
        D WC  E LA KFPNLFS++LNK+A+VA+CWC   H WNLGLRRN+LDN++ N A+ LEILHSWAP+   DSLKWTPN NG+F TKSTFLNLTKRSP+I 
Subjt:  DKWCVAETLAEKFPNLFSLALNKEAYVAECWCTATHSWNLGLRRNMLDNEIANAASALEILHSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPNIV

Query:  VPLIRQIWKNKIPKK
        VPLIR IWK KI KK
Subjt:  VPLIRQIWKNKIPKK

KAA0065914.1 uncharacterized protein E6C27_scaffold538G00970 [Cucumis melo var. makuwa]1.0e-4167.5Show/hide
Query:  DKWCVAETLAEKFPNLFSLALNKEAYVAECWCTATHSWNLGLRRNMLDNEIANAASALEILHSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPNIV
        D WC  E LAE FPNLFSL+LN +A+VA+CWC  THSWNL LRRN+LDN++ N AS LEILHSWAP++  DS KWTPN+NG+FT K+TFL+LTKRSP+I 
Subjt:  DKWCVAETLAEKFPNLFSLALNKEAYVAECWCTATHSWNLGLRRNMLDNEIANAASALEILHSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPNIV

Query:  VPLIRQIWKNKIPKKMKFFL
        VPL R IW+ KIPKK +  L
Subjt:  VPLIRQIWKNKIPKKMKFFL

RVW27524.1 putative ribonuclease H protein [Vitis vinifera]6.3e-3933.33Show/hide
Query:  DKWCVAETLAEKFPNLFSLALNKEAYVAE-CWCTATHSWNLGLRRNMLDNEIANAASALEIL-HSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPN
        D W   ++L  +FP L  + ++K   ++     T   SWN   RRN+ D+EI    S ++ L H        D   W+ + +G FT KS FL L++ S  
Subjt:  DKWCVAETLAEKFPNLFSLALNKEAYVAE-CWCTATHSWNLGLRRNMLDNEIANAASALEIL-HSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPN

Query:  IVVPLIRQIWKNKIPKKMKFFLWSLAYRNLNTHEKLQKKIQNTLLSPSMCCLCAKDEETLDHLFLHCPFTRKAWNSVFGIFDLELCLPSKIDSWMIEGLN
         +V   + +W +++P K+KFF+W +A++ +NT + LQ +     LSP +C LC +  ET+DHLFLHC  T   W+ +F +  ++   P  +   +    N
Subjt:  IVVPLIRQIWKNKIPKKMKFFLWSLAYRNLNTHEKLQKKIQNTLLSPSMCCLCAKDEETLDHLFLHCPFTRKAWNSVFGIFDLELCLPSKIDSWMIEGLN

Query:  IRGYNPKGNILWKCATRSLLWSIWKERNSRIFEDRFNSFDSFWTVVQHTASWWTS
          G + +G +LW+ A  ++LW +W+ERN+RIFED+  + ++ W ++   AS W S
Subjt:  IRGYNPKGNILWKCATRSLLWSIWKERNSRIFEDRFNSFDSFWTVVQHTASWWTS

TYK07901.1 DUF21 domain-containing protein [Cucumis melo var. makuwa]1.7e-4770.45Show/hide
Query:  EIANAASALEILHSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPNIVVPLIRQIWKNKIPKKMKFFLWSLAYRNLNTHEKLQKKIQNTLLSPSMCC
        E+ N A+ LE L SWAP + +DSLKWT N NG+FT KSTFL LTK SP+IV PLI  IWK KI K++KFFLWSLAYR+LNTH+K+QK  Q+T+LSPSMCC
Subjt:  EIANAASALEILHSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPNIVVPLIRQIWKNKIPKKMKFFLWSLAYRNLNTHEKLQKKIQNTLLSPSMCC

Query:  LCAKDEETLDHLFLHCPFTRKAWNSVFGIFDL
        LC K+EETLDHLFLHC FT+KAWN++F IFDL
Subjt:  LCAKDEETLDHLFLHCPFTRKAWNSVFGIFDL

TrEMBL top hitse value%identityAlignment
A0A438CWE0 Putative ribonuclease H protein3.1e-3933.33Show/hide
Query:  DKWCVAETLAEKFPNLFSLALNKEAYVAE-CWCTATHSWNLGLRRNMLDNEIANAASALEIL-HSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPN
        D W   ++L  +FP L  + ++K   ++     T   SWN   RRN+ D+EI    S ++ L H        D   W+ + +G FT KS FL L++ S  
Subjt:  DKWCVAETLAEKFPNLFSLALNKEAYVAE-CWCTATHSWNLGLRRNMLDNEIANAASALEIL-HSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPN

Query:  IVVPLIRQIWKNKIPKKMKFFLWSLAYRNLNTHEKLQKKIQNTLLSPSMCCLCAKDEETLDHLFLHCPFTRKAWNSVFGIFDLELCLPSKIDSWMIEGLN
         +V   + +W +++P K+KFF+W +A++ +NT + LQ +     LSP +C LC +  ET+DHLFLHC  T   W+ +F +  ++   P  +   +    N
Subjt:  IVVPLIRQIWKNKIPKKMKFFLWSLAYRNLNTHEKLQKKIQNTLLSPSMCCLCAKDEETLDHLFLHCPFTRKAWNSVFGIFDLELCLPSKIDSWMIEGLN

Query:  IRGYNPKGNILWKCATRSLLWSIWKERNSRIFEDRFNSFDSFWTVVQHTASWWTS
          G + +G +LW+ A  ++LW +W+ERN+RIFED+  + ++ W ++   AS W S
Subjt:  IRGYNPKGNILWKCATRSLLWSIWKERNSRIFEDRFNSFDSFWTVVQHTASWWTS

A0A5A7V9M3 THO complex subunit 15.0e-4271.3Show/hide
Query:  DKWCVAETLAEKFPNLFSLALNKEAYVAECWCTATHSWNLGLRRNMLDNEIANAASALEILHSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPNIV
        D WC  E LA KFPNLFS++LNK+A+VA+CWC   H WNLGLRRN+LDN++ N A+ LEILHSWAP+   DSLKWTPN NG+F TKSTFLNLTKRSP+I 
Subjt:  DKWCVAETLAEKFPNLFSLALNKEAYVAECWCTATHSWNLGLRRNMLDNEIANAASALEILHSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPNIV

Query:  VPLIRQIWKNKIPKK
        VPLIR IWK KI KK
Subjt:  VPLIRQIWKNKIPKK

A0A5A7VF37 Uncharacterized protein5.0e-4267.5Show/hide
Query:  DKWCVAETLAEKFPNLFSLALNKEAYVAECWCTATHSWNLGLRRNMLDNEIANAASALEILHSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPNIV
        D WC  E LAE FPNLFSL+LN +A+VA+CWC  THSWNL LRRN+LDN++ N AS LEILHSWAP++  DS KWTPN+NG+FT K+TFL+LTKRSP+I 
Subjt:  DKWCVAETLAEKFPNLFSLALNKEAYVAECWCTATHSWNLGLRRNMLDNEIANAASALEILHSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPNIV

Query:  VPLIRQIWKNKIPKKMKFFL
        VPL R IW+ KIPKK +  L
Subjt:  VPLIRQIWKNKIPKKMKFFL

A0A5D3C7R2 DUF21 domain-containing protein8.0e-4870.45Show/hide
Query:  EIANAASALEILHSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPNIVVPLIRQIWKNKIPKKMKFFLWSLAYRNLNTHEKLQKKIQNTLLSPSMCC
        E+ N A+ LE L SWAP + +DSLKWT N NG+FT KSTFL LTK SP+IV PLI  IWK KI K++KFFLWSLAYR+LNTH+K+QK  Q+T+LSPSMCC
Subjt:  EIANAASALEILHSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPNIVVPLIRQIWKNKIPKKMKFFLWSLAYRNLNTHEKLQKKIQNTLLSPSMCC

Query:  LCAKDEETLDHLFLHCPFTRKAWNSVFGIFDL
        LC K+EETLDHLFLHC FT+KAWN++F IFDL
Subjt:  LCAKDEETLDHLFLHCPFTRKAWNSVFGIFDL

A5BPI6 Uncharacterized protein1.8e-3933.33Show/hide
Query:  DKWCVAETLAEKFPNLFSLALNKEAYVAE-CWCTATHSWNLGLRRNMLDNEIANAASALEIL-HSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPN
        D W   ++L  +FP L  + ++K   ++     T   SWN   RRN+ D+EI    S ++ L H        D   W+ + +G FT KS FL L++ S  
Subjt:  DKWCVAETLAEKFPNLFSLALNKEAYVAE-CWCTATHSWNLGLRRNMLDNEIANAASALEIL-HSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPN

Query:  IVVPLIRQIWKNKIPKKMKFFLWSLAYRNLNTHEKLQKKIQNTLLSPSMCCLCAKDEETLDHLFLHCPFTRKAWNSVFGIFDLELCLPSKIDSWMIEGLN
          V   + +W +++P K+KFF+W +A++ +NT++ LQ +     LSP +C LC +  ET+DHLFLHC  T   W+ +F +  ++   P  +   +    N
Subjt:  IVVPLIRQIWKNKIPKKMKFFLWSLAYRNLNTHEKLQKKIQNTLLSPSMCCLCAKDEETLDHLFLHCPFTRKAWNSVFGIFDLELCLPSKIDSWMIEGLN

Query:  IRGYNPKGNILWKCATRSLLWSIWKERNSRIFEDRFNSFDSFWTVVQHTASWWTS
          G + +G +LW+ A  ++LW +W+ERN+RIFED+  + ++ W ++   AS W S
Subjt:  IRGYNPKGNILWKCATRSLLWSIWKERNSRIFEDRFNSFDSFWTVVQHTASWWTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G45063.1 copper ion binding;electron carriers8.3e-0523.94Show/hide
Query:  TFLNLTKRSPNIVVPLIRQIWKNKIPKKMKFFLWSLAYRNLNTHEKLQKKIQNTLLSPSMCCLCAKDEETLDHLFLHCPFTRKAWNSVFGIFDLELCLPS
        T LN+ K SP      + ++ +N++    +F  W +                     PS+C LC   +ET  H+F  CPF+ + W+  F   +  +  P 
Subjt:  TFLNLTKRSPNIVVPLIRQIWKNKIPKKMKFFLWSLAYRNLNTHEKLQKKIQNTLLSPSMCCLCAKDEETLDHLFLHCPFTRKAWNSVFGIFDLELCLPS

Query:  KIDSWMIEGLNIRGYNPKGNILWKCATRSLLWSIWKERNSRI
        ++       L     + K   + K A ++ ++ IW+ERN R+
Subjt:  KIDSWMIEGLNIRGYNPKGNILWKCATRSLLWSIWKERNSRI

AT2G06845.1 Beta-galactosidase related protein1.2e-0622.4Show/hide
Query:  QKKIQNTLLSPSMCCLCAKDEETLDHLFLHCPFTRKAWNSVFGIFDLELCLPSKIDSWMIEGLNIRGYNPKGNILWKCATRSLLWSIWKERNSRIFEDR-
        Q+ +   +   + CC C  + ET+ H+  HC F +  W+               +   +I G  +    P G      A   + WS+WK RN ++F  R 
Subjt:  QKKIQNTLLSPSMCCLCAKDEETLDHLFLHCPFTRKAWNSVFGIFDLELCLPSKIDSWMIEGLNIRGYNPKGNILWKCATRSLLWSIWKERNSRIFEDR-

Query:  FNSFDSFWTVVQHTASWWTSSGEGP
        F   ++    + +   W  + G+ P
Subjt:  FNSFDSFWTVVQHTASWWTSSGEGP

AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.5e-0926.63Show/hide
Query:  KDSLKWTPNMNG----NFTTKSTFLNLTKRSPNIVVPLIRQIWKNKIPKKMKFFLWSLAYRNLNTHEKLQKKIQNTLLSPSMCCLCAKDEETLDHLFLHC
        +DS  W  N  G    +F+++ T+  +   SP   VP  + +W  +   +     W      L T ++L+    N    PS   LC+  +ET  HLF  C
Subjt:  KDSLKWTPNMNG----NFTTKSTFLNLTKRSPNIVVPLIRQIWKNKIPKKMKFFLWSLAYRNLNTHEKLQKKIQNTLLSPSMCCLCAKDEETLDHLFLHC

Query:  PFTRKAWNSVFGIF--DLELCLPSKIDSWMIEGLNIRGYNPKGNILWKCATRSLLWSIWKERNSRIFEDRFNSFDSFWTVVQHT
         F+   W      F       LP+   SW+++ L +R ++     + K   +S ++ +WKERN+RIF    +S  S    +  T
Subjt:  PFTRKAWNSVFGIF--DLELCLPSKIDSWMIEGLNIRGYNPKGNILWKCATRSLLWSIWKERNSRIFEDRFNSFDSFWTVVQHT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTTACCTTGACGGACTCATGGGATAAATGGTGTGTCGCGGAAACACTTGCAGAAAAATTCCCTAACTTATTCTCTTTGGCGCTGAATAAGGAAGCTTATGTGGC
TGAATGCTGGTGTACTGCTACTCATTCTTGGAATTTGGGCCTTAGAAGAAATATGCTCGACAACGAGATTGCCAATGCGGCCTCAGCTTTAGAAATTCTTCACTCTTGGG
CCCCCACTGAAAGGAAGGATAGTCTTAAATGGACTCCTAACATGAATGGCAATTTCACTACAAAATCCACTTTTCTTAACTTAACTAAGAGATCCCCCAACATTGTCGTT
CCCTTGATTCGCCAGATTTGGAAGAATAAAATCCCAAAGAAGATGAAGTTTTTCTTATGGTCGCTTGCTTACAGAAACCTCAACACCCATGAGAAACTACAAAAAAAAAT
TCAGAACACATTGCTTAGCCCCTCGATGTGCTGCCTATGCGCTAAAGATGAGGAAACCTTGGATCATTTATTTTTACATTGTCCCTTCACAAGAAAAGCTTGGAACAGTG
TGTTTGGAATTTTTGATTTGGAGCTTTGCCTTCCTAGCAAGATTGATAGCTGGATGATTGAAGGTCTTAACATCAGAGGTTACAACCCTAAAGGAAACATCTTATGGAAA
TGTGCGACGCGTTCCCTTTTGTGGAGCATTTGGAAAGAAAGGAATAGCAGAATTTTTGAAGATAGATTTAATTCTTTTGATTCTTTTTGGACTGTGGTTCAACACACAGC
CTCTTGGTGGACTTCTTCCGGGGAGGGCCCTCTTGTCCCTCGCCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAATTTACCTTGACGGACTCATGGGATAAATGGTGTGTCGCGGAAACACTTGCAGAAAAATTCCCTAACTTATTCTCTTTGGCGCTGAATAAGGAAGCTTATGTGGC
TGAATGCTGGTGTACTGCTACTCATTCTTGGAATTTGGGCCTTAGAAGAAATATGCTCGACAACGAGATTGCCAATGCGGCCTCAGCTTTAGAAATTCTTCACTCTTGGG
CCCCCACTGAAAGGAAGGATAGTCTTAAATGGACTCCTAACATGAATGGCAATTTCACTACAAAATCCACTTTTCTTAACTTAACTAAGAGATCCCCCAACATTGTCGTT
CCCTTGATTCGCCAGATTTGGAAGAATAAAATCCCAAAGAAGATGAAGTTTTTCTTATGGTCGCTTGCTTACAGAAACCTCAACACCCATGAGAAACTACAAAAAAAAAT
TCAGAACACATTGCTTAGCCCCTCGATGTGCTGCCTATGCGCTAAAGATGAGGAAACCTTGGATCATTTATTTTTACATTGTCCCTTCACAAGAAAAGCTTGGAACAGTG
TGTTTGGAATTTTTGATTTGGAGCTTTGCCTTCCTAGCAAGATTGATAGCTGGATGATTGAAGGTCTTAACATCAGAGGTTACAACCCTAAAGGAAACATCTTATGGAAA
TGTGCGACGCGTTCCCTTTTGTGGAGCATTTGGAAAGAAAGGAATAGCAGAATTTTTGAAGATAGATTTAATTCTTTTGATTCTTTTTGGACTGTGGTTCAACACACAGC
CTCTTGGTGGACTTCTTCCGGGGAGGGCCCTCTTGTCCCTCGCCCTTAG
Protein sequenceShow/hide protein sequence
MKFTLTDSWDKWCVAETLAEKFPNLFSLALNKEAYVAECWCTATHSWNLGLRRNMLDNEIANAASALEILHSWAPTERKDSLKWTPNMNGNFTTKSTFLNLTKRSPNIVV
PLIRQIWKNKIPKKMKFFLWSLAYRNLNTHEKLQKKIQNTLLSPSMCCLCAKDEETLDHLFLHCPFTRKAWNSVFGIFDLELCLPSKIDSWMIEGLNIRGYNPKGNILWK
CATRSLLWSIWKERNSRIFEDRFNSFDSFWTVVQHTASWWTSSGEGPLVPRP