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CSPI05G18880 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G18880
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Genome locationChr5:20056507..20057131
RNA-Seq ExpressionCSPI05G18880
SyntenyCSPI05G18880
Gene Ontology termsNA
InterPro domainsIPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037388.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]3.6e-2262.2Show/hide
Query:  YMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRKK
        YMTET+EW  VPDE +GY KN    W++L+  KGLP HEATWE Y++ ++   ++HLEDKV LE ECN RPPIIHQY RRKK
Subjt:  YMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRKK

KAA0040562.1 Pyridoxine/pyridoxamine 5'-phosphate oxidase [Cucumis melo var. makuwa]2.5e-2358.51Show/hide
Query:  MLENHQAEPSNMLYMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRK
        ML  H     ++ Y+TE +EW  +  E+YGYLKNK  GWD+L+  KGLP HEAT E Y+E+++L  EFHLEDKVNLE+ECNDR PII QY RR+
Subjt:  MLENHQAEPSNMLYMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRK

KAA0041840.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.7e-2256.25Show/hide
Query:  MLENHQAEPSNMLYMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRKKK
        +L  H     ++ YM + +EW  +  E+YGYLKNK   WD+LV  KGLP HEATWE Y+E+++L  EFHL+ KVNLE+E NDRP II QYSRR+KK
Subjt:  MLENHQAEPSNMLYMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRKKK

TYJ97524.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]3.6e-2262.2Show/hide
Query:  YMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRKK
        YMTET+EW  VPDE +GY KN    W++L+  KGLP HEATWE Y++ ++   ++HLEDKV LE ECN RPPIIHQY RRKK
Subjt:  YMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRKK

TYK07930.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]4.7e-2262.2Show/hide
Query:  YMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRKK
        YMTE +EW  VP+E YGY KN    W+LL+  KGLP HEATWE Y++ ++   ++HLEDKV LE+ECN RPPIIHQY RRKK
Subjt:  YMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRKK

TrEMBL top hitse value%identityAlignment
A0A5A7T3M0 Transposon Tf2-1 polyprotein isoform X11.7e-2262.2Show/hide
Query:  YMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRKK
        YMTET+EW  VPDE +GY KN    W++L+  KGLP HEATWE Y++ ++   ++HLEDKV LE ECN RPPIIHQY RRKK
Subjt:  YMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRKK

A0A5A7TEU6 Retrotransposable element Tf21.3e-2256.25Show/hide
Query:  MLENHQAEPSNMLYMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRKKK
        +L  H     ++ YM + +EW  +  E+YGYLKNK   WD+LV  KGLP HEATWE Y+E+++L  EFHL+ KVNLE+E NDRP II QYSRR+KK
Subjt:  MLENHQAEPSNMLYMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRKKK

A0A5D3BEN4 Transposon Tf2-1 polyprotein isoform X11.7e-2262.2Show/hide
Query:  YMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRKK
        YMTET+EW  VPDE +GY KN    W++L+  KGLP HEATWE Y++ ++   ++HLEDKV LE ECN RPPIIHQY RRKK
Subjt:  YMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRKK

A0A5D3C2J9 Pyridoxine/pyridoxamine 5'-phosphate oxidase1.2e-2358.51Show/hide
Query:  MLENHQAEPSNMLYMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRK
        ML  H     ++ Y+TE +EW  +  E+YGYLKNK  GWD+L+  KGLP HEAT E Y+E+++L  EFHLEDKVNLE+ECNDR PII QY RR+
Subjt:  MLENHQAEPSNMLYMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRK

A0A5D3C9B5 Transposon Tf2-6 polyprotein2.3e-2262.2Show/hide
Query:  YMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRKK
        YMTE +EW  VP+E YGY KN    W+LL+  KGLP HEATWE Y++ ++   ++HLEDKV LE+ECN RPPIIHQY RRKK
Subjt:  YMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAAAATCATCAAGCCGAGCCGTCTAATATGCTTTACATGACTGAGACCTATGAATGGTGGGTAGTACCTGATGAGATCTATGGCTACTTAAAGAATAAAACCGA
GGGGTGGGATTTGTTGGTCGGCGGGAAAGGACTACCTATGCATGAGGCTACGTGGGAAGACTATGAAGAAATGAAGCGGCTGTCTCAAGAGTTTCACCTTGAGGACAAGG
TGAATTTGGAGAAGGAATGTAATGATAGACCTCCTATCATTCACCAATATAGTAGAAGGAAGAAGAAGAAAGAGAGTGTTAGTGTTGGCACGTGTGAGTAG
mRNA sequenceShow/hide mRNA sequence
AAGAGATGCTGATTTGAAGCGTAGAGATGTGGAATATGGGGTAGGAGATCTGGTTTTTCTTAAAATAAGGCCATATTGGCAAGTCCCATTACAAAAAAGAAGAAATGAGA
AGTTATCAGCTATGTTCTTTGGTCCTTATAAGACCATAGAACGGATAGGCCTGGTTGCATACAAGTTAGAGTTACCAGAATCATCATCCATTCATCCTGTCTTCATGTTT
TCCAGTTGAAGAAAATGTTGGAAAATCATCAAGCCGAGCCGTCTAATATGCTTTACATGACTGAGACCTATGAATGGTGGGTAGTACCTGATGAGATCTATGGCTACTTA
AAGAATAAAACCGAGGGGTGGGATTTGTTGGTCGGCGGGAAAGGACTACCTATGCATGAGGCTACGTGGGAAGACTATGAAGAAATGAAGCGGCTGTCTCAAGAGTTTCA
CCTTGAGGACAAGGTGAATTTGGAGAAGGAATGTAATGATAGACCTCCTATCATTCACCAATATAGTAGAAGGAAGAAGAAGAAAGAGAGTGTTAGTGTTGGCACGTGTG
AGTAGGTTGAGTGAGTTAGTTAGGATATGCGTTTTAAATTATTATAAATAGAGTTGTAATCTTGGAGGGAAGGGC
Protein sequenceShow/hide protein sequence
MLENHQAEPSNMLYMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKVNLEKECNDRPPIIHQYSRRKKKKESVSVGTCE