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CSPI05G18930 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G18930
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr5:20121113..20121451
RNA-Seq ExpressionCSPI05G18930
SyntenyCSPI05G18930
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648575.1 hypothetical protein Csa_007955 [Cucumis sativus]1.6e-5799.1Show/hide
Query:  MSITHRSMKNDNVKGSLELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTK
        MSITH SMKNDNVKGSLELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTK
Subjt:  MSITHRSMKNDNVKGSLELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTK

Query:  HYRKVRLREIK
        HYRKVRLREIK
Subjt:  HYRKVRLREIK

KAF4374839.1 hypothetical protein G4B88_031042, partial [Cannabis sativa]3.1e-0835.96Show/hide
Query:  GVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTKHYRKVRLRE
        G  K+SGS  P + EEW+ R+++ F+IIGC ++ K+++   +L  DA  WW  +K      +  +W  F+  F  +YF + YR  +LRE
Subjt:  GVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTKHYRKVRLRE

TYK07721.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]9.0e-0830.11Show/hide
Query:  LELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTKHYRKVRLRE
        L+  G   + GS  PT++E W++ ++KCF+++ C E+ KV L   +L  +A+ WW ++     +    +W  F+G F  +Y+   Y K +  E
Subjt:  LELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTKHYRKVRLRE

XP_017216862.1 PREDICTED: uncharacterized protein LOC108194427 [Daucus carota subsp. sativus]6.9e-0832.26Show/hide
Query:  LELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTKHYRKVRLRE
        L   G   + G++ PTE E W+ R ++ F ++ C+++ K     ++L DDA +WW T+ +   +  K  WD FQ  F  +Y  + YR  + RE
Subjt:  LELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTKHYRKVRLRE

XP_037446316.1 uncharacterized protein LOC119316015 [Triticum dicoccoides]1.4e-0832.17Show/hide
Query:  MSITHRSMKNDNVK---GSLELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEY
        M I  R +KND+ +   G  +      +SG+  P E E+W+  ++K FE +GC  + KV     ML   A EWW   K+   E     W +F+  F K+Y
Subjt:  MSITHRSMKNDNVK---GSLELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEY

Query:  FTKHYRKVRLREIKE
        F +  ++++ RE  E
Subjt:  FTKHYRKVRLREIKE

TrEMBL top hitse value%identityAlignment
A0A0A0KP78 Uncharacterized protein6.7e-5797.3Show/hide
Query:  MSITHRSMKNDNVKGSLELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTK
        MSITH SMKNDNVKGSLELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKV +VETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTK
Subjt:  MSITHRSMKNDNVKGSLELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTK

Query:  HYRKVRLREIK
        HYRKVRLREIK
Subjt:  HYRKVRLREIK

A0A5A7U6G1 Retrotrans_gag domain-containing protein7.5e-0830.11Show/hide
Query:  LELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTKHYRKVRLRE
        L+  GV  + GS  P + E W++ ++KCF+++ C E+ KV L   +L  +A+EWW ++     +    +W  F+G+F  +Y+   Y + +  E
Subjt:  LELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTKHYRKVRLRE

A0A5D3C756 Retrotransposon protein, putative, Ty3-gypsy subclass4.4e-0830.11Show/hide
Query:  LELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTKHYRKVRLRE
        L+  G   + GS  PT++E W++ ++KCF+++ C E+ KV L   +L  +A+ WW ++     +    +W  F+G F  +Y+   Y K +  E
Subjt:  LELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTKHYRKVRLRE

A0A7J6FYP4 Retrotrans_gag domain-containing protein (Fragment)1.5e-0835.96Show/hide
Query:  GVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTKHYRKVRLRE
        G  K+SGS  P + EEW+ R+++ F+IIGC ++ K+++   +L  DA  WW  +K      +  +W  F+  F  +YF + YR  +LRE
Subjt:  GVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTKHYRKVRLRE

Q8RU68 Putative 22 kDa kafirin cluster; Ty3-Gypsy type7.5e-0831.3Show/hide
Query:  MSITHRSMKND---NVKGSLELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEY
        M I  R  K+D   N  G  +      +SG+  P E EEW+  ++K FE +GC +  K+     ML   A EWW   K+   E     W++F+  F K+Y
Subjt:  MSITHRSMKND---NVKGSLELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEY

Query:  FTKHYRKVRLREIKE
        F +  ++++ +E  E
Subjt:  FTKHYRKVRLREIKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTATTACTCACAGATCCATGAAAAACGATAATGTAAAAGGAAGTCTAGAACTTTATGGAGTAGAAAAGTATAGTGGATCAATTTACCCTACTGAAATTGAAGAGTG
GATGCATAGGGTGCAAAAATGCTTTGAAATAATAGGTTGTGATGAGGATATTAAAGTAACATTAGTTGAAACCATGCTCATAGATGATGCAAAAGAATGGTGGTTCACAT
TGAAAGAAGATTTGGTCGAGGAAGCCAAACAGAATTGGGATGTATTCCAAGGTATGTTTGGAAAGGAATACTTTACCAAACACTATCGGAAGGTAAGATTAAGGGAAATA
AAGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTATTACTCACAGATCCATGAAAAACGATAATGTAAAAGGAAGTCTAGAACTTTATGGAGTAGAAAAGTATAGTGGATCAATTTACCCTACTGAAATTGAAGAGTG
GATGCATAGGGTGCAAAAATGCTTTGAAATAATAGGTTGTGATGAGGATATTAAAGTAACATTAGTTGAAACCATGCTCATAGATGATGCAAAAGAATGGTGGTTCACAT
TGAAAGAAGATTTGGTCGAGGAAGCCAAACAGAATTGGGATGTATTCCAAGGTATGTTTGGAAAGGAATACTTTACCAAACACTATCGGAAGGTAAGATTAAGGGAAATA
AAGGAATAA
Protein sequenceShow/hide protein sequence
MSITHRSMKNDNVKGSLELYGVEKYSGSIYPTEIEEWMHRVQKCFEIIGCDEDIKVTLVETMLIDDAKEWWFTLKEDLVEEAKQNWDVFQGMFGKEYFTKHYRKVRLREI
KE