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CSPI05G18940 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G18940
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Genome locationChr5:20130323..20131113
RNA-Seq ExpressionCSPI05G18940
SyntenyCSPI05G18940
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032454.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-5246.67Show/hide
Query:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN
        MVQTRIEER+E  EQ       EL K+  +E  L  +++NM+ ++ Q EK  Q ++ + E   KER +A  +  ES  Q +   K   G++S S +I   
Subjt:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN

Query:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC
        + ERK D+D   NDR+KFK                          KLT+SEK+ V++I F+GP LNWY SQEER+KF  W NLKERLL RF+S+R+ ++C
Subjt:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC

Query:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN
        GRFLRI+QET+VEEYRN FDK VAP+SD+ +++VEETFM GL PWI+ E   C+P+ LAE M   Q+VE+
Subjt:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN

TYK01796.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-5246.67Show/hide
Query:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN
        MVQTRIEER+E  EQ       EL K+  +E  L  +++NM+ ++ Q EK  Q ++ + E   KER +A  +  ES  Q +   K   G++S S +I   
Subjt:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN

Query:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC
        + ERK D+D   NDR+KFK                          KLT+SEK+ V++I F+GP LNWY SQEER+KF  W NLKERLL RF+S+R+ ++C
Subjt:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC

Query:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN
        GRFLRI+QET+VEEYRN FDK VAP+SD+ +++VEETFM GL PWI+ E   C+P+ LAE M   Q+VE+
Subjt:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN

TYK22240.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-5246.67Show/hide
Query:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN
        MVQTRIEER+E  EQ       EL K+  +E  L  +++NM+ ++ Q EK  Q ++ + E   KER +A  +  ES  Q +   K   G++S S +I   
Subjt:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN

Query:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC
        + ERK D+D   NDR+KFK                          KLT+SEK+ V++I F+GP LNWY SQEER+KF  W NLKERLL RF+S+R+ ++C
Subjt:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC

Query:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN
        GRFLRI+QET+VEEYRN FDK VAP+SD+ +++VEETFM GL PWI+ E   C+P+ LAE M   Q+VE+
Subjt:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN

TYK30083.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-5246.67Show/hide
Query:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN
        MVQTRIEER+E  EQ       EL K+  +E  L  +++NM+ ++ Q EK  Q ++ + E   KER +A  +  ES  Q +   K   G++S S +I   
Subjt:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN

Query:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC
        + ERK D+D   NDR+KFK                          KLT+SEK+ V++I F+GP LNWY SQEER+KF  W NLKERLL RF+S+R+ ++C
Subjt:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC

Query:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN
        GRFLRI+QET+VEEYRN FDK VAP+SD+ +++VEETFM GL PWI+ E   C+P+ LAE M   Q+VE+
Subjt:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN

XP_031745972.1 uncharacterized protein LOC116406393 [Cucumis sativus]7.6e-5749.05Show/hide
Query:  MVQTRIEERLENHEQELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNNTVERKAD
        MV TR EER+E ++QE+  I     K+ ++ +++  +  Q EKTHQM+MI  +++ KER   S K  +   QET   K  EGESS S+  +N T ER+ +
Subjt:  MVQTRIEERLENHEQELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNNTVERKAD

Query:  NDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLCGRFLRIR
        ++   N+R+KFK                          KL+D+EK+ VA+ISFEGP LNWY +QEERDKFT W NLKERLL RFRSSR+ S+CG+FLRI+
Subjt:  NDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLCGRFLRIR

Query:  QETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN
        Q+T+VEEYRN FD+ +AP++D+ +++VEETFM GL PWIK E  FC+P  LAEMM   Q+VEN
Subjt:  QETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN

TrEMBL top hitse value%identityAlignment
A0A1S4E5H0 uncharacterized protein LOC1079922069.4e-5346.3Show/hide
Query:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN
        MVQTRIEER+E+ EQ       EL K+  +E  L  +S+NM+ ++ Q EK  Q ++ + E   K R  A  +  ES  Q +   K  +G++S S++I   
Subjt:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN

Query:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC
        + ERK D+D   +D++KFK                          KLT+SEK+ V++I F+GP LNWY SQEER+KF  W NLKERL+ RF+S+R+ ++C
Subjt:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC

Query:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN
        GRFLRI+QET+VEEYRN FDK VAP+SD+ +++VEETFM GL PWI+ E   CRP+ LAEMM   Q+VE+
Subjt:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN

A0A5A7SMQ7 Ty3/gypsy retrotransposon protein9.4e-5346.67Show/hide
Query:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN
        MVQTRIEER+E  EQ       EL K+  +E  L  +++NM+ ++ Q EK  Q ++ + E   KER +A  +  ES  Q +   K   G++S S +I   
Subjt:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN

Query:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC
        + ERK D+D   NDR+KFK                          KLT+SEK+ V++I F+GP LNWY SQEER+KF  W NLKERLL RF+S+R+ ++C
Subjt:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC

Query:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN
        GRFLRI+QET+VEEYRN FDK VAP+SD+ +++VEETFM GL PWI+ E   C+P+ LAE M   Q+VE+
Subjt:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN

A0A5D3BU88 Ty3/gypsy retrotransposon protein9.4e-5346.67Show/hide
Query:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN
        MVQTRIEER+E  EQ       EL K+  +E  L  +++NM+ ++ Q EK  Q ++ + E   KER +A  +  ES  Q +   K   G++S S +I   
Subjt:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN

Query:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC
        + ERK D+D   NDR+KFK                          KLT+SEK+ V++I F+GP LNWY SQEER+KF  W NLKERLL RF+S+R+ ++C
Subjt:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC

Query:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN
        GRFLRI+QET+VEEYRN FDK VAP+SD+ +++VEETFM GL PWI+ E   C+P+ LAE M   Q+VE+
Subjt:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN

A0A5D3DFT1 Ty3/gypsy retrotransposon protein9.4e-5346.67Show/hide
Query:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN
        MVQTRIEER+E  EQ       EL K+  +E  L  +++NM+ ++ Q EK  Q ++ + E   KER +A  +  ES  Q +   K   G++S S +I   
Subjt:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN

Query:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC
        + ERK D+D   NDR+KFK                          KLT+SEK+ V++I F+GP LNWY SQEER+KF  W NLKERLL RF+S+R+ ++C
Subjt:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC

Query:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN
        GRFLRI+QET+VEEYRN FDK VAP+SD+ +++VEETFM GL PWI+ E   C+P+ LAE M   Q+VE+
Subjt:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN

A0A5D3E1V9 Ty3/gypsy retrotransposon protein9.4e-5346.67Show/hide
Query:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN
        MVQTRIEER+E  EQ       EL K+  +E  L  +++NM+ ++ Q EK  Q ++ + E   KER +A  +  ES  Q +   K   G++S S +I   
Subjt:  MVQTRIEERLENHEQ-------ELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNN

Query:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC
        + ERK D+D   NDR+KFK                          KLT+SEK+ V++I F+GP LNWY SQEER+KF  W NLKERLL RF+S+R+ ++C
Subjt:  TVERKADNDGENNDRNKFK--------------------------KLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLC

Query:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN
        GRFLRI+QET+VEEYRN FDK VAP+SD+ +++VEETFM GL PWI+ E   C+P+ LAE M   Q+VE+
Subjt:  GRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMVEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCAGACAAGAATTGAAGAGAGGTTGGAAAACCACGAACAAGAACTCAGCAAGATATCAACAATGGAAGACAAACTTACATCGATGTCGCAAAACATGAAGAACCT
GCAAGCTCAAGTGGAGAAAACTCACCAGATGGTGATGATTTTCAAGGAGACAATGGAGAAGGAACGAGTGCTGGCGAGTGGGAAGTCAGTCGAGTCTTCCGAACAAGAGA
CGTCGACATTGAAACCGGCCGAGGGAGAAAGTTCGGTGAGCAAGGAAATCAAAAACAACACGGTGGAAAGGAAAGCTGACAACGACGGAGAGAACAACGATCGAAACAAA
TTCAAGAAGTTAACTGATTCGGAAAAACTTACGGTAGCCTCGATTAGTTTTGAAGGTCCGACACTTAACTGGTATTGCTCACAAGAAGAGAGAGATAAGTTTACCGATTG
GTTAAACTTAAAGGAACGCCTATTAAGCCGATTCCGGTCATCCCGCCAAGAATCTCTCTGTGGCCGATTTTTGCGAATTCGACAGGAAACAAGCGTGGAAGAATACCGAA
ATCTTTTCGATAAATGGGTTGCACCAATATCGGATATTCTGGAGAAGATTGTGGAGGAAACATTTATGGAAGGGTTGTTACCGTGGATTAAGGTGGAGACGAAATTTTGC
CGACCACAGAAATTAGCGGAGATGATGAAATACGTGCAGATGGTGGAGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGCAGACAAGAATTGAAGAGAGGTTGGAAAACCACGAACAAGAACTCAGCAAGATATCAACAATGGAAGACAAACTTACATCGATGTCGCAAAACATGAAGAACCT
GCAAGCTCAAGTGGAGAAAACTCACCAGATGGTGATGATTTTCAAGGAGACAATGGAGAAGGAACGAGTGCTGGCGAGTGGGAAGTCAGTCGAGTCTTCCGAACAAGAGA
CGTCGACATTGAAACCGGCCGAGGGAGAAAGTTCGGTGAGCAAGGAAATCAAAAACAACACGGTGGAAAGGAAAGCTGACAACGACGGAGAGAACAACGATCGAAACAAA
TTCAAGAAGTTAACTGATTCGGAAAAACTTACGGTAGCCTCGATTAGTTTTGAAGGTCCGACACTTAACTGGTATTGCTCACAAGAAGAGAGAGATAAGTTTACCGATTG
GTTAAACTTAAAGGAACGCCTATTAAGCCGATTCCGGTCATCCCGCCAAGAATCTCTCTGTGGCCGATTTTTGCGAATTCGACAGGAAACAAGCGTGGAAGAATACCGAA
ATCTTTTCGATAAATGGGTTGCACCAATATCGGATATTCTGGAGAAGATTGTGGAGGAAACATTTATGGAAGGGTTGTTACCGTGGATTAAGGTGGAGACGAAATTTTGC
CGACCACAGAAATTAGCGGAGATGATGAAATACGTGCAGATGGTGGAGAATTAG
Protein sequenceShow/hide protein sequence
MVQTRIEERLENHEQELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNNTVERKADNDGENNDRNK
FKKLTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLCGRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFC
RPQKLAEMMKYVQMVEN