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CSPI05G18970 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G18970
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr5:20138339..20139569
RNA-Seq ExpressionCSPI05G18970
SyntenyCSPI05G18970
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsIPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036990.1 protein SDA1-like protein isoform X2 [Cucumis melo var. makuwa]6.0e-4551.28Show/hide
Query:  TPPALISYGDRET--STLDEQLKERDIALDALKEHL----------------------------------------------------------QNWPVA
        TPP L+ YGD  T  STLD+QLK+RDIAL ALKEHL                                                          +   VA
Subjt:  TPPALISYGDRET--STLDEQLKERDIALDALKEHL----------------------------------------------------------QNWPVA

Query:  YKLELPAAATIHPVFHISQLKKAFGECAKKEELVPYMTEHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWENYDDFHQSFPDYHLEDK
        Y+LELP  ATIHPVFHISQLK+AFG+C   +EL PYMTE H+WLA+PDE +GYQ+ +KG WEVL+SWKGLP HEATWE YDDF QSFPDYHLEDK
Subjt:  YKLELPAAATIHPVFHISQLKKAFGECAKKEELVPYMTEHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWENYDDFHQSFPDYHLEDK

KAA0037388.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]3.5e-3752.76Show/hide
Query:  TPPALISYGDRET--STLDEQLKERDIALDALKEHLQNWPVAYKLELP-------------AAATIHPVFHISQLK--------KAFGECAKKEELVPYM
        TPP L+SYGD  T  STL+EQLK+RDIAL ALKEHL+      K                     + P   +S  K        KAFG+C   ++L PYM
Subjt:  TPPALISYGDRET--STLDEQLKERDIALDALKEHLQNWPVAYKLELP-------------AAATIHPVFHISQLK--------KAFGECAKKEELVPYM

Query:  TEHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWENYDDFHQSFPDYHLEDKYAHEI
        TE H+WLA+PDE +GYQ+  KG WEVL+SWKGLP HEATWE YDDF QSFPDYHLEDK   E+
Subjt:  TEHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWENYDDFHQSFPDYHLEDKYAHEI

KAA0066077.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]1.1e-4149.23Show/hide
Query:  TPPALISYGDRET--STLDEQLKERDIALDALKEHL----------------------------------------------------------QNWPVA
        TP  L+SYGD  T  STLDEQLK+RDIAL ALKEHL                                                          +   VA
Subjt:  TPPALISYGDRET--STLDEQLKERDIALDALKEHL----------------------------------------------------------QNWPVA

Query:  YKLELPAAATIHPVFHISQLKKAFGECAKKEELVPYMTEHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWENYDDFHQSFPDYHLEDK
        Y+LELP  ATIHPVFHISQLK+AFG+C   + L PYMTE H+WLA+PDE +GYQ+  KG WEVL+SWKGLP HEATWE Y DF QSF DYH+ED+
Subjt:  YKLELPAAATIHPVFHISQLKKAFGECAKKEELVPYMTEHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWENYDDFHQSFPDYHLEDK

TYK07930.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]5.8e-4047.69Show/hide
Query:  TPPALISYGDRET--STLDEQLKERDIALDALKEHL----------------------------------------------------------QNWPVA
        TPP L+ YGD  T  STLD+QLK+RDIAL  LKEHL                                                          +   VA
Subjt:  TPPALISYGDRET--STLDEQLKERDIALDALKEHL----------------------------------------------------------QNWPVA

Query:  YKLELPAAATIHPVFHISQLKKAFGECAKKEELVPYMTEHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWENYDDFHQSFPDYHLEDK
        YKLELP +  IH VF I QLK+AFGEC   ++L PYMTE+H+W A+P+E YGY++ +KG WE+L+SWKGLPSHEATWE YDDF QSFPDYHLEDK
Subjt:  YKLELPAAATIHPVFHISQLKKAFGECAKKEELVPYMTEHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWENYDDFHQSFPDYHLEDK

TYK19390.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]7.5e-4061.43Show/hide
Query:  TPPALISYGDRET--STLDEQLKERDIALDALKEHL--------------------QNWPVAYKLELPAAATIHPVFHISQLKKAFGECAKKEELVPYMT
        TPP L+ YGD  T  STLD+QLK+RDIAL ALKEHL                    +   +AYKLELP +ATIHPVFHISQLK+AFG+C   +E  PYMT
Subjt:  TPPALISYGDRET--STLDEQLKERDIALDALKEHL--------------------QNWPVAYKLELPAAATIHPVFHISQLKKAFGECAKKEELVPYMT

Query:  EHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWE
        E+H+WLAIPDE YGYQ+  KG WEVL+SWKGLP+HEATWE
Subjt:  EHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWE

TrEMBL top hitse value%identityAlignment
A0A5A7T0V2 Protein SDA1-like protein isoform X22.9e-4551.28Show/hide
Query:  TPPALISYGDRET--STLDEQLKERDIALDALKEHL----------------------------------------------------------QNWPVA
        TPP L+ YGD  T  STLD+QLK+RDIAL ALKEHL                                                          +   VA
Subjt:  TPPALISYGDRET--STLDEQLKERDIALDALKEHL----------------------------------------------------------QNWPVA

Query:  YKLELPAAATIHPVFHISQLKKAFGECAKKEELVPYMTEHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWENYDDFHQSFPDYHLEDK
        Y+LELP  ATIHPVFHISQLK+AFG+C   +EL PYMTE H+WLA+PDE +GYQ+ +KG WEVL+SWKGLP HEATWE YDDF QSFPDYHLEDK
Subjt:  YKLELPAAATIHPVFHISQLKKAFGECAKKEELVPYMTEHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWENYDDFHQSFPDYHLEDK

A0A5A7VG68 Transposon Tf2-9 polyprotein5.1e-4249.23Show/hide
Query:  TPPALISYGDRET--STLDEQLKERDIALDALKEHL----------------------------------------------------------QNWPVA
        TP  L+SYGD  T  STLDEQLK+RDIAL ALKEHL                                                          +   VA
Subjt:  TPPALISYGDRET--STLDEQLKERDIALDALKEHL----------------------------------------------------------QNWPVA

Query:  YKLELPAAATIHPVFHISQLKKAFGECAKKEELVPYMTEHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWENYDDFHQSFPDYHLEDK
        Y+LELP  ATIHPVFHISQLK+AFG+C   + L PYMTE H+WLA+PDE +GYQ+  KG WEVL+SWKGLP HEATWE Y DF QSF DYH+ED+
Subjt:  YKLELPAAATIHPVFHISQLKKAFGECAKKEELVPYMTEHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWENYDDFHQSFPDYHLEDK

A0A5D3BEN4 Transposon Tf2-1 polyprotein isoform X11.7e-3752.76Show/hide
Query:  TPPALISYGDRET--STLDEQLKERDIALDALKEHLQNWPVAYKLELP-------------AAATIHPVFHISQLK--------KAFGECAKKEELVPYM
        TPP L+SYGD  T  STL+EQLK+RDIAL ALKEHL+      K                     + P   +S  K        KAFG+C   ++L PYM
Subjt:  TPPALISYGDRET--STLDEQLKERDIALDALKEHLQNWPVAYKLELP-------------AAATIHPVFHISQLK--------KAFGECAKKEELVPYM

Query:  TEHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWENYDDFHQSFPDYHLEDKYAHEI
        TE H+WLA+PDE +GYQ+  KG WEVL+SWKGLP HEATWE YDDF QSFPDYHLEDK   E+
Subjt:  TEHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWENYDDFHQSFPDYHLEDKYAHEI

A0A5D3C9B5 Transposon Tf2-6 polyprotein2.8e-4047.69Show/hide
Query:  TPPALISYGDRET--STLDEQLKERDIALDALKEHL----------------------------------------------------------QNWPVA
        TPP L+ YGD  T  STLD+QLK+RDIAL  LKEHL                                                          +   VA
Subjt:  TPPALISYGDRET--STLDEQLKERDIALDALKEHL----------------------------------------------------------QNWPVA

Query:  YKLELPAAATIHPVFHISQLKKAFGECAKKEELVPYMTEHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWENYDDFHQSFPDYHLEDK
        YKLELP +  IH VF I QLK+AFGEC   ++L PYMTE+H+W A+P+E YGY++ +KG WE+L+SWKGLPSHEATWE YDDF QSFPDYHLEDK
Subjt:  YKLELPAAATIHPVFHISQLKKAFGECAKKEELVPYMTEHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWENYDDFHQSFPDYHLEDK

A0A5D3D7H2 Transposon Ty3-I Gag-Pol polyprotein3.6e-4061.43Show/hide
Query:  TPPALISYGDRET--STLDEQLKERDIALDALKEHL--------------------QNWPVAYKLELPAAATIHPVFHISQLKKAFGECAKKEELVPYMT
        TPP L+ YGD  T  STLD+QLK+RDIAL ALKEHL                    +   +AYKLELP +ATIHPVFHISQLK+AFG+C   +E  PYMT
Subjt:  TPPALISYGDRET--STLDEQLKERDIALDALKEHL--------------------QNWPVAYKLELPAAATIHPVFHISQLKKAFGECAKKEELVPYMT

Query:  EHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWE
        E+H+WLAIPDE YGYQ+  KG WEVL+SWKGLP+HEATWE
Subjt:  EHHKWLAIPDEVYGYQQKEKGVWEVLVSWKGLPSHEATWE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCATTAGAGGCACACCTCCAGCCTTAATATCCTATGGAGACCGGGAAACATCCACATTAGATGAACAGCTCAAAGAAAGAGATATAGCCTTGGACGCTTTGAAAGA
ACATTTACAAAATTGGCCAGTGGCATACAAGCTGGAACTACCTGCCGCAGCCACGATTCATCCCGTCTTCCATATTTCACAGTTGAAGAAAGCGTTCGGGGAGTGTGCAA
AGAAAGAAGAATTAGTTCCCTACATGACTGAACACCACAAATGGTTAGCTATACCAGATGAAGTCTACGGATACCAACAAAAGGAGAAAGGAGTTTGGGAAGTATTAGTG
AGCTGGAAGGGATTGCCAAGTCATGAGGCAACTTGGGAGAATTATGATGATTTCCACCAGTCCTTCCCTGATTACCACCTTGAGGACAAGTATGCTCATGAAATACTGGG
TCAGATGCAATATGGAGAGCAACTTGATTGTCACACCACAACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCATTAGAGGCACACCTCCAGCCTTAATATCCTATGGAGACCGGGAAACATCCACATTAGATGAACAGCTCAAAGAAAGAGATATAGCCTTGGACGCTTTGAAAGA
ACATTTACAAAATTGGCCAGTGGCATACAAGCTGGAACTACCTGCCGCAGCCACGATTCATCCCGTCTTCCATATTTCACAGTTGAAGAAAGCGTTCGGGGAGTGTGCAA
AGAAAGAAGAATTAGTTCCCTACATGACTGAACACCACAAATGGTTAGCTATACCAGATGAAGTCTACGGATACCAACAAAAGGAGAAAGGAGTTTGGGAAGTATTAGTG
AGCTGGAAGGGATTGCCAAGTCATGAGGCAACTTGGGAGAATTATGATGATTTCCACCAGTCCTTCCCTGATTACCACCTTGAGGACAAGTATGCTCATGAAATACTGGG
TCAGATGCAATATGGAGAGCAACTTGATTGTCACACCACAACTTAG
Protein sequenceShow/hide protein sequence
MFIRGTPPALISYGDRETSTLDEQLKERDIALDALKEHLQNWPVAYKLELPAAATIHPVFHISQLKKAFGECAKKEELVPYMTEHHKWLAIPDEVYGYQQKEKGVWEVLV
SWKGLPSHEATWENYDDFHQSFPDYHLEDKYAHEILGQMQYGEQLDCHTTT