CuGenDBv2

Gene ID	CSPI05G19400
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrotransposon protein
Genome location	Chr5:20639267..20640211
RNA-Seq Expression	CSPI05G19400
Synteny	CSPI05G19400
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]

1.2e-71

56.02

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Query:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------
        MD   + +I+  F ++  QL+L+L+ L ND KR+TH PYE RH+IRQL+YFRMIH SDLV  +STRMDRR F+ILCHLLRTIAGLTSTE+VD        
Subjt:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------

Query:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC
                            GET+SRHFN+VLLAV+RLH ELLKKPQPV N CTD RW  FENCLGALD TYIKVN+  +DR RY+TRKGEVATNVLGVC
Subjt:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC

Query:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE
                                              YYYL D GYPNAEGFLAPYRGQR HLQE
Subjt:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

9.3e-72

56.02

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Query:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------
        MD   + +I+  F ++  QL+L+L+ L ND KR+TH PYE RH+IRQL+YFRMIH SDLV  +STRMDRR F+ILCHLLRTIAGLTSTE+VD        
Subjt:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------

Query:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC
                            GET+SRHFN+VLLAV+RLH+ELLKKPQPV N CTD RW  FENCLGALD TYIKVN+  +DR RY+TRKGEVATNVLGVC
Subjt:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC

Query:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE
                                              YYYL D GYPNAEGFLAPYRGQR HLQE
Subjt:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE

KAA0051057.1 retrotransposon protein [Cucumis melo var. makuwa]

1.2e-71

56.02

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Query:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------
        MD   + +I+  F ++  QL+L+L+ L ND KR+TH PYE RH+IRQL+YFRMIH SDLV  +STRMDRR F+ILCHLLRTIAGLTSTE+VD        
Subjt:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------

Query:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC
                            GET+SRHFN+VLLAV+RLH ELLKKPQPV N CTD RW  FENCLGALD TYIKVN+  +DR RY+TRKGEVATNVLGVC
Subjt:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC

Query:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE
                                              YYYL D GYPNAEGFLAPYRGQR HLQE
Subjt:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE

KAA0065286.1 retrotransposon protein [Cucumis melo var. makuwa]

2.4e-72

56.02

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Query:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------
        MD   + +I+  F ++  QL+L+L+ L ND KR+TH PYE RH+IRQL+YFRMIH SDLV  +STRMDRR F+ILCHLLRTIAGLTSTE+VD        
Subjt:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------

Query:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC
                            GET+SRHFN+VLLAV+RLH ELLKKPQPV N CTD RW CFENCLGALD TYIKVN+  +DR RY+TRKGEVATNVLGVC
Subjt:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC

Query:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE
                                              YYYL D GYPNAEGFLAPYRGQ  HLQE
Subjt:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE

KAA0065893.1 retrotransposon protein [Cucumis melo var. makuwa]

1.2e-71

56.02

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Query:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------
        MD   + +I+  F ++  QL+L+L+ L ND KR+TH PYE RH+IRQL+YFRMIH SDLV  +STRMDRR F+ILCHLLRTIAGLTSTE+VD        
Subjt:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------

Query:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC
                            GET+SRHFN+VLLAV+RLH ELLKKPQPV N CTD RW  FENCLGALD TYIKVN+  +DR RY+TRKGEVATNVLGVC
Subjt:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC

Query:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE
                                              YYYL D GYPNAEGFLAPYRGQR HLQE
Subjt:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TXW1 Retrotransposon protein

4.5e-72

56.02

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Query:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------
        MD   + +I+  F ++  QL+L+L+ L ND KR+TH PYE RH+IRQL+YFRMIH SDLV  +STRMDRR F+ILCHLLRTIAGLTSTE+VD        
Subjt:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------

Query:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC
                            GET+SRHFN+VLLAV+RLH+ELLKKPQPV N CTD RW  FENCLGALD TYIKVN+  +DR RY+TRKGEVATNVLGVC
Subjt:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC

Query:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE
                                              YYYL D GYPNAEGFLAPYRGQR HLQE
Subjt:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE

A0A5A7U9H2 Retrotransposon protein

5.9e-72

56.02

Show/hide

Query:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------
        MD   + +I+  F ++  QL+L+L+ L ND KR+TH PYE RH+IRQL+YFRMIH SDLV  +STRMDRR F+ILCHLLRTIAGLTSTE+VD        
Subjt:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------

Query:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC
                            GET+SRHFN+VLLAV+RLH ELLKKPQPV N CTD RW  FENCLGALD TYIKVN+  +DR RY+TRKGEVATNVLGVC
Subjt:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC

Query:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE
                                              YYYL D GYPNAEGFLAPYRGQR HLQE
Subjt:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE

A0A5A7VCK9 Retrotransposon protein

5.9e-72

56.02

Show/hide

Query:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------
        MD   + +I+  F ++  QL+L+L+ L ND KR+TH PYE RH+IRQL+YFRMIH SDLV  +STRMDRR F+ILCHLLRTIAGLTSTE+VD        
Subjt:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------

Query:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC
                            GET+SRHFN+VLLAV+RLH ELLKKPQPV N CTD RW  FENCLGALD TYIKVN+  +DR RY+TRKGEVATNVLGVC
Subjt:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC

Query:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE
                                              YYYL D GYPNAEGFLAPYRGQR HLQE
Subjt:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE

A0A5A7VG29 Retrotransposon protein

1.2e-72

56.02

Show/hide

Query:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------
        MD   + +I+  F ++  QL+L+L+ L ND KR+TH PYE RH+IRQL+YFRMIH SDLV  +STRMDRR F+ILCHLLRTIAGLTSTE+VD        
Subjt:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------

Query:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC
                            GET+SRHFN+VLLAV+RLH ELLKKPQPV N CTD RW CFENCLGALD TYIKVN+  +DR RY+TRKGEVATNVLGVC
Subjt:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC

Query:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE
                                              YYYL D GYPNAEGFLAPYRGQ  HLQE
Subjt:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE

A0A5D3BDX0 Retrotransposon protein

5.9e-72

56.02

Show/hide

Query:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------
        MD   + +I+  F ++  QL+L+L+ L ND KR+TH PYE RH+IRQL+YFRMIH SDLV  +STRMDRR F+ILCHLLRTIAGLTSTE+VD        
Subjt:  MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD--------

Query:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC
                            GET+SRHFN+VLLAV+RLH ELLKKPQPV N CTD RW  FENCLGALD TYIKVN+  +DR RY+TRKGEVATNVLGVC
Subjt:  --------------------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC

Query:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE
                                              YYYL D GYPNAEGFLAPYRGQR HLQE
Subjt:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G43722.1 unknown protein

6.5e-07

24.5

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Query:  ETVSRHFNLVLLAVLRLHNELLKKPQ-------PVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC--------------
        ETV R F  VL A   L  + ++ P        P         W  F   +GA+D T++ V +    +  Y  R    + N++ +C              
Subjt:  ETVSRHFNLVLLAVLRLHNELLKKPQ-------PVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC--------------

Query:  -------------------------YYYLCDVGYPNAEGFLAPYRGQRDHL
                                  YYL D GYPN +G LAPYR  R+ +
Subjt:  -------------------------YYYLCDVGYPNAEGFLAPYRGQRDHL

AT5G28950.1 unknown protein

1.8e-04

38.1

Show/hide

Query:  FENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVCYY
        F++C+GA+DDT+I   +SQ     ++ RKG+++ N+L  C +
Subjt:  FENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVCYY

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

2.0e-08

27.11

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Query:  ILCHLLRTIAGLTSTEIVDGETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCT-DSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC
        I+ H LRT A +       GET+SRHFN VL AV+ +  +     QP +N+ T ++    F++C+G +D  +I V +   ++  ++   G +  NVL   
Subjt:  ILCHLLRTIAGLTSTEIVDGETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCT-DSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVC

Query:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE
                                               YY+ D  YPN  GF+APY G   + +E
Subjt:  --------------------------------------YYYLCDVGYPNAEGFLAPYRGQRDHLQE

Sequences

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CDS sequence

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ATGGATAACCAAAACATTCGCACTATACTAGTTGTCTTCACATCCACCCATAATCAGTTAGTACTGCTATTGGATTCACTAATGAATGACAATAAGCGGGTGACCCATAA
ACCGTACGAATTGAGGCATCAAATTAGACAATTGTCATACTTCCGTATGATACACTCCTCCGACCTCGTTTATTGTGAAAGTACCAGAATGGACAGACGAACTTTTTCCA
TTCTATGTCACTTATTGAGGACGATTGCTGGTCTGACGTCGACCGAAATCGTCGATGGAGAGACTGTTTCCCGTCACTTTAACCTCGTACTGTTGGCGGTGTTGCGATTG
CACAATGAGTTGTTGAAGAAACCCCAGCCAGTGACTAACACATGCACTGATTCACGATGGAGTTGCTTTGAGAACTGCCTTGGGGCATTGGATGACACGTATATCAAGGT
GAACATGTCGCAAACCGATAGGCATAGGTATAAAACACGTAAGGGAGAAGTTGCCACAAACGTCCTCGGTGTGTGTTATTACTATCTATGCGACGTCGGATATCCCAATG
CAGAGGGATTTCTAGCTCCCTATAGAGGACAAAGAGACCACTTGCAAGAGTAG

mRNA sequence

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Protein sequence

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MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVDGETVSRHFNLVLLAVLRL
HNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVCYYYLCDVGYPNAEGFLAPYRGQRDHLQE

CSPI05G19400 (gene) of Cucumber (PI 183967) v1 genome