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CSPI05G19410 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G19410
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDynein light chain
Genome locationChr5:20643125..20645938
RNA-Seq ExpressionCSPI05G19410
SyntenyCSPI05G19410
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150121.1 dynein light chain 1, cytoplasmic [Cucumis sativus]1.2e-67100Show/hide
Query:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD

XP_022939677.1 dynein light chain LC6, flagellar outer arm [Cucurbita moschata]1.6e-6495.52Show/hide
Query:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        M+GAEMELERR+KFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRG SLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD

XP_022973572.1 dynein light chain LC6, flagellar outer arm [Cucurbita maxima]2.8e-6494.78Show/hide
Query:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        M+GAEMELERRSKFLNGLILKKKAGE QE RDRLN+RVRASDM FPLQNRAFSCARELLDSMPGKLDSKRLAL LKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRG SLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD

XP_023551552.1 dynein light chain LC6, flagellar outer arm [Cucurbita pepo subsp. pepo]7.4e-6596.27Show/hide
Query:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        M+GAEMELERRSKFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRG SLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD

XP_038906759.1 dynein light chain LC6, flagellar outer arm [Benincasa hispida]5.1e-6697.76Show/hide
Query:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        MDGAEMELERRSKFL+GLILKKKAGEQQEQRDRLNVRVRASDM FPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRG SLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD

TrEMBL top hitse value%identityAlignment
A0A0A0KPF8 Dynein light chain5.9e-68100Show/hide
Query:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD

A0A1S3CSY6 Dynein light chain5.9e-68100Show/hide
Query:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD

A0A6J1CWZ8 Dynein light chain8.8e-6494.03Show/hide
Query:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        M+GAEMELERRSKFLNGLI KKKA EQQE+RDRLN+RVRASDM FPLQNRAFSCARELLDSMPGKLDSKR ALALKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRG SLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD

A0A6J1FHG9 Dynein light chain7.9e-6595.52Show/hide
Query:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        M+GAEMELERR+KFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRG SLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD

A0A6J1I7W2 Dynein light chain1.4e-6494.78Show/hide
Query:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        M+GAEMELERRSKFLNGLILKKKAGE QE RDRLN+RVRASDM FPLQNRAFSCARELLDSMPGKLDSKRLAL LKKEFDSSYGPAWHCIVGTSFGSYVT
Subjt:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD
        HSLGGFLYFSIDKVYILLFKTAVEPLSRG SLKD
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD

SwissProt top hitse value%identityAlignment
O02414 Dynein light chain LC6, flagellar outer arm1.4e-1344.05Show/hide
Query:  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT
        ++ +DM   +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGSYVTH    F+YF + +V +LLFK+
Subjt:  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT

O96860 Dynein light chain 2, cytoplasmic8.0e-1445.24Show/hide
Query:  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT
        ++ +DM+  +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGSYVTH    F+YF + +V ILLFK+
Subjt:  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT

Q22799 Dynein light chain 1, cytoplasmic6.1e-1445.24Show/hide
Query:  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT
        ++ +DM+  +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGSYVTH    F+YF + +V ILLFK+
Subjt:  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT

Q24117 Dynein light chain 1, cytoplasmic8.0e-1445.24Show/hide
Query:  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT
        ++ +DM+  +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGSYVTH    F+YF + +V ILLFK+
Subjt:  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT

Q3MHR3 Dynein light chain 2, cytoplasmic1.4e-1344.05Show/hide
Query:  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT
        ++ +DM+  +Q  A  CA + ++    + D   +A  +KKEFD  Y P WHCIVG +FGSYVTH    F+YF + +V ILLFK+
Subjt:  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein9.0e-5377.34Show/hide
Query:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT
        M+G E+ELERRSKFLN LI KKKA EQQ+Q+D  NVRVRASDM  P QNRAFS +RE+L++ PGK D+KRLA ALKK+FDS+YGPAWHCIVGTSFGSYVT
Subjt:  MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYILLFKTAVEPLSR
        HS GGFLYF IDKVY+LLFKTAVEPL +
Subjt:  HSLGGFLYFSIDKVYILLFKTAVEPLSR

AT1G52240.2 RHO guanyl-nucleotide exchange factor 116.3e-1442.05Show/hide
Query:  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEP
        V  SDM   +Q +A + A + LD +    D K +A  +KKEFD  YG  W C+VG++FG + THS G F+YF ++ +  L+FK A  P
Subjt:  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEP

AT3G16120.1 Dynein light chain type 1 family protein4.1e-1341.86Show/hide
Query:  RVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTA
        +V  +DM   +Q +A   A + LD +    DS  +A  +KKEFD  YG  W C+VGT+FG + THS G F+YF +  +  L+FK A
Subjt:  RVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTA

AT4G27360.1 Dynein light chain type 1 family protein2.4e-1345.78Show/hide
Query:  SDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAV
        +DM   ++  A S A + LD      +  ++A  +KKEFD SYG  W CIVGT FGS+VTH  G F++FS+  + ILLFK +V
Subjt:  SDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAV

AT5G20110.1 Dynein light chain type 1 family protein1.0e-2761.46Show/hide
Query:  DRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLS
        + L VR+ A+DM   +Q  AF CAR  LDS+  K  SK +A  LKKEFD  YGPAWHCIVG+SFGS+VTHS G F+YFS+DK+Y+LLFKT V P S
Subjt:  DRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGAGCGGAAATGGAGCTTGAGCGACGGAGTAAGTTTCTGAATGGGCTTATTTTGAAGAAGAAGGCAGGGGAACAGCAAGAGCAGCGCGATCGTCTCAATGTTCG
CGTTAGAGCCTCCGATATGGCCTTTCCTCTGCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTGCTCGATTCGATGCCTGGGAAGCTCGATAGCAAACGTCTTGCTCTTG
CCCTTAAAAAGGAATTTGATTCCTCCTATGGTCCGGCTTGGCATTGCATTGTGGGAACTAGCTTTGGATCCTATGTAACACATTCCCTTGGTGGGTTCTTGTATTTTTCG
ATAGATAAAGTTTATATCCTTCTCTTCAAAACGGCAGTGGAGCCTTTATCTCGTGGAGCATCCTTGAAAGATTGA
mRNA sequenceShow/hide mRNA sequence
AAAGTTGGGGTTTGGTGGGCATCTCTATCTAAGCACAGATTACCAATGAAGAAATGGGAATTATTTCATTGGATTTCGTCTTTGACCGATGTTGTGGTTCAAAGACAGAA
TCCCACAAACACCAACCCAATAAAATTCAAAATTTTTTTATTTTCGTCTCGCAATTCCAACTCTTTCTTGGCATTGCCTTCCTCTCCTTGCGCCATTGTTTCTCTTTTTC
CTCCCCCTTCACCCTTGTCTTCTTCTTTCTTCTGCCACACATTTTGTCATATACGTTACGGGCATCGTGTTTTATTTCCTCTGATTCTGAACCTCTGAACTTCTGAAGAA
GAAGAAGAAGGTGGGGTTGTTTTTTTTGTAGATCTTTTCCCCCAATTTCATGAGATTGTAGTGTTTCTGGGTCATGGATGGAGCGGAAATGGAGCTTGAGCGACGGAGTA
AGTTTCTGAATGGGCTTATTTTGAAGAAGAAGGCAGGGGAACAGCAAGAGCAGCGCGATCGTCTCAATGTTCGCGTTAGAGCCTCCGATATGGCCTTTCCTCTGCAGAAT
CGCGCTTTTAGTTGCGCTCGTGAACTGCTCGATTCGATGCCTGGGAAGCTCGATAGCAAACGTCTTGCTCTTGCCCTTAAAAAGGAATTTGATTCCTCCTATGGTCCGGC
TTGGCATTGCATTGTGGGAACTAGCTTTGGATCCTATGTAACACATTCCCTTGGTGGGTTCTTGTATTTTTCGATAGATAAAGTTTATATCCTTCTCTTCAAAACGGCAG
TGGAGCCTTTATCTCGTGGAGCATCCTTGAAAGATTGAGTTTCTCTATTATATTCGTCGAACGGGTATCAAATTTTAAGTCATGAGCAAGAACAACCAGGTTCAGCCATA
CTATTCTTTTTTGTTGTATCATTGACTTTACCGTGTTAAAGTGATGTGAGTTGTGCTTGTGCATTGATTTTACTAGTGAATTGTGAAATTTTTGTTGTGTGCAGTCCAAC
ACCAAGGATTTGTGATGTTATCTTATATTCATGCTTTATTTTGGTTCAAGGGAGTAAATAAAAAGTTGTATGACAATATATCGATTTGTTTTTTT
Protein sequenceShow/hide protein sequence
MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFS
IDKVYILLFKTAVEPLSRGASLKD