CuGenDBv2

Gene ID	CSPI05G20180
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	Chr5:21357224..21357640
RNA-Seq Expression	CSPI05G20180
Synteny	CSPI05G20180
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0050821 - protein stabilization (biological process) GO:0009523 - photosystem II (cellular component) GO:0009536 - plastid (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0042301 - phosphate ion binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR001056 - Photosystem II reaction centre protein H IPR036001 - Photosystem antenna protein-like superfamily IPR036863 - Photosystem II reaction centre protein H superfamily IPR044900 - Photosystem II CP43 reaction centre protein superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CUR00526.1 psbC [Acacia anthochaera]

1.2e-28

62.39

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Query:  TVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP
        T+ G LLK      G +    DLEDI+GGHVWL                            EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP
Subjt:  TVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP

Query:  EASQAQAFTFLVRDQRL
        EASQAQAFTFLVRDQRL
Subjt:  EASQAQAFTFLVRDQRL

KAF8740839.1 hypothetical protein HU200_013721 [Digitaria exilis]

1.2e-28

66.98

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Query:  TVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL-----------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFL
        ++ G LLK      G +    DLEDI+GGHVW                  EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFL
Subjt:  TVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL-----------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFL

Query:  VRDQRL
        VRDQRL
Subjt:  VRDQRL

QSV37371.1 photosystem II CP43 chlorophyll apoprotein [Passiflora xishuangbannaensis]

1.2e-28

61.86

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Query:  RTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG
        R + G LLK      G +    DLEDI+GGHVWL                            EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG
Subjt:  RTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG

Query:  PEASQAQAFTFLVRDQRL
        PEASQAQAFTFLVRDQRL
Subjt:  PEASQAQAFTFLVRDQRL

YP_009272487.1 photosystem II CP43 chlorophyll apoprotein [Utricularia reniformis]

1.2e-28

62.93

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
        +VG LLK      G +    DLEDI+GGHVWL                            EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE

Query:  ASQAQAFTFLVRDQRL
        ASQAQAFTFLVRDQRL
Subjt:  ASQAQAFTFLVRDQRL

YP_009770340.1 photosystem II 44 kDa protein [Umtiza listeriana]

1.6e-28

61.86

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Query:  RTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG
        R + G LLK      G +    DLEDI+GGHVWL                            EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG
Subjt:  RTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG

Query:  PEASQAQAFTFLVRDQRL
        PEASQAQAFTFLVRDQRL
Subjt:  PEASQAQAFTFLVRDQRL

TrEMBL top hits

e value

%identity

Alignment

A0A1C7D4S6 Photosystem II CP43 reaction center protein

5.8e-29

62.93

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
        +VG LLK      G +    DLEDI+GGHVWL                            EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE

Query:  ASQAQAFTFLVRDQRL
        ASQAQAFTFLVRDQRL
Subjt:  ASQAQAFTFLVRDQRL

A0A1D0C6B6 Photosystem II CP43 reaction center protein

5.8e-29

62.39

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Query:  TVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP
        T+ G LLK      G +    DLEDI+GGHVWL                            EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP
Subjt:  TVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP

Query:  EASQAQAFTFLVRDQRL
        EASQAQAFTFLVRDQRL
Subjt:  EASQAQAFTFLVRDQRL

A0A1D0CDU7 Photosystem II CP43 reaction center protein

5.8e-29

62.39

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Query:  TVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP
        T+ G LLK      G +    DLEDI+GGHVWL                            EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP
Subjt:  TVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGP

Query:  EASQAQAFTFLVRDQRL
        EASQAQAFTFLVRDQRL
Subjt:  EASQAQAFTFLVRDQRL

A0A6H0EEV8 Photosystem II CP43 reaction center protein

7.5e-29

62.93

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
        + G LLK      G +A   DLEDI+GGHVWL                            EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE

Query:  ASQAQAFTFLVRDQRL
        ASQAQAFTFLVRDQRL
Subjt:  ASQAQAFTFLVRDQRL

A0A7T7IEH3 Photosystem II CP43 chlorophyll apoprotein

7.5e-29

62.07

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
        ++G LLK      G +    DLEDI+GGHVWL                            EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE

Query:  ASQAQAFTFLVRDQRL
        ASQAQAFTFLVRDQRL
Subjt:  ASQAQAFTFLVRDQRL

SwissProt top hits

e value

%identity

Alignment

A6MM32 Photosystem II CP43 reaction center protein

5.9e-31

62.07

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
        + G LLK      G +    DLEDI+GGHVWL                            EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE

Query:  ASQAQAFTFLVRDQRL
        ASQAQAFTFLVRDQRL
Subjt:  ASQAQAFTFLVRDQRL

B1A931 Photosystem II CP43 reaction center protein

5.9e-31

62.07

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
        + G LLK      G +    DLEDI+GGHVWL                            EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE

Query:  ASQAQAFTFLVRDQRL
        ASQAQAFTFLVRDQRL
Subjt:  ASQAQAFTFLVRDQRL

Q09MI2 Photosystem II CP43 reaction center protein

5.9e-31

61.21

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
        + G LLK      G +    DLEDI+GGHVWL                            EAYLSYSLGAL+VFGFIACCFVWFNNTAYPSEFYGPTGPE
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE

Query:  ASQAQAFTFLVRDQRL
        ASQAQAFTFLVRDQRL
Subjt:  ASQAQAFTFLVRDQRL

Q2QD93 Photosystem II CP43 reaction center protein

4.6e-31

62.93

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
        + G LLK      G +    DLEDIVGGHVWL                            EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE

Query:  ASQAQAFTFLVRDQRL
        ASQAQAFTFLVRDQRL
Subjt:  ASQAQAFTFLVRDQRL

Q7YJX6 Photosystem II CP43 reaction center protein

5.9e-31

62.07

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
        + G LLK      G +    DLEDI+GGHVWL                            EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE

Query:  ASQAQAFTFLVRDQRL
        ASQAQAFTFLVRDQRL
Subjt:  ASQAQAFTFLVRDQRL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

1.8e-30

60.34

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE
        + G LLK      G +    DLEDI+GGHVWL                            EAYLSYSL ALSV GFIACCFVWFNNTAYPSEFYGPTGPE
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWL----------------------------EAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPE

Query:  ASQAQAFTFLVRDQRL
        ASQAQAFTFLVRDQRL
Subjt:  ASQAQAFTFLVRDQRL

ATCG00710.1 photosystem II reaction center protein H

1.1e-11

72.73

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Query:  MATQTVDDSSRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVG
        MATQTV+DSSRS PR T VG LLKPLNSEYGKVAPG+    ++G
Subjt:  MATQTVDDSSRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVG

Sequences

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CDS sequence

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ATGGCTACACAAACCGTTGACGATAGTTCTAGATCTAGGCCAAGACGAACTGTTGTAGGGGATTTATTGAAACCATTGAATTCAGAATATGGTAAAGTGGCTCCTGGGTA
CGATTTGGAAGATATAGTTGGGGGACATGTATGGTTAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCA
ATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTCAATTTCTTTTAACC
TAA

mRNA sequence

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Protein sequence

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MATQTVDDSSRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLQFLLT

CSPI05G20180 (gene) of Cucumber (PI 183967) v1 genome